Clone Sequence Records
BO06610.3prime Sequence
698 bp (697 high quality bases) assembled on 2005-12-03
> BO06610.3prime
ATGGTCTAGAAAGCTTGCGGTGTGGCTCATCGGCGATGTGAGATCAATCT
CGATTATAGACTTGCAATTGTCTGCTTCCTTGGGCGGAGTAGTGGGAGCA
CGTGACTCCATAGCCATGTCCATGGCCAGCGAGATAAGCTGCTGCCACTG
CGCCACGTCCACATTTAGACTCTCGAGATGCTGACACAGTGAGTCCAGTC
CTTCCACATCGGTCGCCTTCAGATCAAAGGGTATCAACTGGTCGCGTTTA
TCGCCACGGAGTACAGTGACACCCTTCACACGTGCCGGCAGCGCTTCTTG
ATTTATATAGGTTCTTGTTGTCTTCGACAGCGTGTGAATGCTTTCCATGA
TTTCGTTTTTGCGCTGTTTGGCCAGCATTTTCTGCTGTTTAAACCAATCT
TTCATGGCCAAATTGTGAAGTTTGGTGGCCTCCAGTTCTCGATCAAGTTC
CTCTATGAAGGAAACTCGCTTGTCCAACTCCTCCCGCCGCTCCATGAGCA
CTTTTTGCAACTTTCCCACTTTCCGCTGATGGCGCGAAGCTGCTTCCTTG
ACATCCAACAAATTGCTGTTGAATTTAAAGACCTTTTTGATGAATTTCGC
CTCGAGGGCTTCCATGTGAATTTGTTTTTCGTACAAAGCCTTTACGCGCC
TTTCGTAACTCGATTCAGTCATAATAATTGCCATGTCGACTGATAACT
BO06610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7242-PA | 669 | CG7242-RA | 1..666 | 684..19 | 3330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 968 | CG7242-RA | 92..757 | 684..19 | 3330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12962715..12963038 | 342..19 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 12962026..12962242 | 557..341 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 12961836..12961962 | 684..558 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:33:18 has no hits.
BO06610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:30 Download gff for
BO06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 16..684 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:56 Download gff for
BO06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 16..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:48 Download gff for
BO06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 11..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:05 Download gff for
BO06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 11..684 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:05 Download gff for
BO06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12961830..12961962 | 558..690 | 96 | -> | Minus |
3R | 12962026..12962242 | 341..557 | 100 | -> | Minus |
3R | 12962717..12963044 | 11..340 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:48 Download gff for
BO06610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8787552..8787684 | 558..690 | 96 | -> | Minus |
arm_3R | 8787748..8787964 | 341..557 | 100 | -> | Minus |
arm_3R | 8788439..8788766 | 11..340 | 98 | | Minus |
BO06610.5prime Sequence
698 bp (697 high quality bases) assembled on 2005-12-03
> BO06610.5prime
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCGCAAGCTTTCTAGACC
BO06610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7242-PA | 669 | CG7242-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 968 | CG7242-RA | 92..757 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12962715..12963038 | 359..682 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 12962026..12962242 | 144..360 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 12961836..12961962 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:05:31 has no hits.
BO06610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:31 Download gff for
BO06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:59 Download gff for
BO06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7242-PA | 1..669 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:15 Download gff for
BO06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:50:23 Download gff for
BO06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..763 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:50:23 Download gff for
BO06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12961830..12961962 | 11..143 | 96 | -> | Plus |
3R | 12962026..12962242 | 144..360 | 100 | -> | Plus |
3R | 12962717..12963044 | 361..690 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:15 Download gff for
BO06610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8787552..8787684 | 11..143 | 96 | -> | Plus |
arm_3R | 8787748..8787964 | 144..360 | 100 | -> | Plus |
arm_3R | 8788439..8788766 | 361..690 | 98 | | Plus |
BO06610.complete Sequence
700 bp (700 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630460
> BO06610.complete
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCGCAAGCTTTCTAGACCAT
BO06610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 669 | CG7242-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-RA | 968 | CG7242-RA | 92..757 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12962715..12963038 | 359..682 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 12962026..12962242 | 144..360 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 12961836..12961962 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:40:12 has no hits.
BO06610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:39 Download gff for
BO06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 1..669 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:50 Download gff for
BO06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 85..756 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:04 Download gff for
BO06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..757 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:39 Download gff for
BO06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 85..756 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:24 Download gff for
BO06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spc25-RA | 92..757 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:24 Download gff for
BO06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12962717..12963038 | 361..684 | 99 | | Plus |
3R | 12961836..12961962 | 17..143 | 100 | -> | Plus |
3R | 12962026..12962242 | 144..360 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:04 Download gff for
BO06610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8787558..8787684 | 17..143 | 100 | -> | Plus |
arm_3R | 8787748..8787964 | 144..360 | 100 | -> | Plus |
arm_3R | 8788439..8788760 | 361..684 | 99 | | Plus |
BO06610.pep Sequence
Translation from 16 to 700
> BO06610.pep
MAIIMTESSYERRVKALYEKQIHMEALEAKFIKKVFKFNSNLLDVKEAAS
RHQRKVGKLQKVLMERREELDKRVSFIEELDRELEATKLHNLAMKDWFKQ
QKMLAKQRKNEIMESIHTLSKTTRTYINQEALPARVKGVTVLRGDKRDQL
IPFDLKATDVEGLDSLCQHLESLNVDVAQWQQLISLAMDMAMESRAPTTP
PKEADNCKSIIEIDLTSPMSHTASFLDH
BO06610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spc25-PA | 222 | CG7242-PA | 1..222 | 1..222 | 1116 | 100 | Plus |