Clone BO06610 Report

Search the DGRC for BO06610

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptSpc25-RA
Protein status:BO06610.pep: validated full length
Sequenced Size:700

Clone Sequence Records

BO06610.3prime Sequence

698 bp (697 high quality bases) assembled on 2005-12-03

> BO06610.3prime
ATGGTCTAGAAAGCTTGCGGTGTGGCTCATCGGCGATGTGAGATCAATCT
CGATTATAGACTTGCAATTGTCTGCTTCCTTGGGCGGAGTAGTGGGAGCA
CGTGACTCCATAGCCATGTCCATGGCCAGCGAGATAAGCTGCTGCCACTG
CGCCACGTCCACATTTAGACTCTCGAGATGCTGACACAGTGAGTCCAGTC
CTTCCACATCGGTCGCCTTCAGATCAAAGGGTATCAACTGGTCGCGTTTA
TCGCCACGGAGTACAGTGACACCCTTCACACGTGCCGGCAGCGCTTCTTG
ATTTATATAGGTTCTTGTTGTCTTCGACAGCGTGTGAATGCTTTCCATGA
TTTCGTTTTTGCGCTGTTTGGCCAGCATTTTCTGCTGTTTAAACCAATCT
TTCATGGCCAAATTGTGAAGTTTGGTGGCCTCCAGTTCTCGATCAAGTTC
CTCTATGAAGGAAACTCGCTTGTCCAACTCCTCCCGCCGCTCCATGAGCA
CTTTTTGCAACTTTCCCACTTTCCGCTGATGGCGCGAAGCTGCTTCCTTG
ACATCCAACAAATTGCTGTTGAATTTAAAGACCTTTTTGATGAATTTCGC
CTCGAGGGCTTCCATGTGAATTTGTTTTTCGTACAAAGCCTTTACGCGCC
TTTCGTAACTCGATTCAGTCATAATAATTGCCATGTCGACTGATAACT

BO06610.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7242-PA 669 CG7242-RA 1..666 684..19 3330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 968 CG7242-RA 92..757 684..19 3330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12962715..12963038 342..19 1620 100 Minus
3R 32079331 3R 12962026..12962242 557..341 1085 100 Minus
3R 32079331 3R 12961836..12961962 684..558 635 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:33:18 has no hits.

BO06610.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:30 Download gff for BO06610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 16..684 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:56 Download gff for BO06610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 16..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:48 Download gff for BO06610.3prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 11..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:05 Download gff for BO06610.3prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 11..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:05 Download gff for BO06610.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12961830..12961962 558..690 96 -> Minus
3R 12962026..12962242 341..557 100 -> Minus
3R 12962717..12963044 11..340 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:48 Download gff for BO06610.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8787552..8787684 558..690 96 -> Minus
arm_3R 8787748..8787964 341..557 100 -> Minus
arm_3R 8788439..8788766 11..340 98   Minus

BO06610.5prime Sequence

698 bp (697 high quality bases) assembled on 2005-12-03

> BO06610.5prime
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCGCAAGCTTTCTAGACC

BO06610.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7242-PA 669 CG7242-RA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 968 CG7242-RA 92..757 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12962715..12963038 359..682 1620 100 Plus
3R 32079331 3R 12962026..12962242 144..360 1085 100 Plus
3R 32079331 3R 12961836..12961962 17..143 635 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:05:31 has no hits.

BO06610.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:31 Download gff for BO06610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 17..685 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:59 Download gff for BO06610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7242-PA 1..669 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:15 Download gff for BO06610.5prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 17..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:50:23 Download gff for BO06610.5prime
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..763 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:50:23 Download gff for BO06610.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12961830..12961962 11..143 96 -> Plus
3R 12962026..12962242 144..360 100 -> Plus
3R 12962717..12963044 361..690 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:15 Download gff for BO06610.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8787552..8787684 11..143 96 -> Plus
arm_3R 8787748..8787964 144..360 100 -> Plus
arm_3R 8788439..8788766 361..690 98   Plus

BO06610.complete Sequence

700 bp (700 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630460

> BO06610.complete
GAAGTTATCAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAA
GGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAG
GCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGT
CAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAG
TGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAG
GAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAA
AGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAA
TCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAAT
CAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGA
TAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAG
GACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCG
CAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACG
TGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCG
AGATTGATCTCACATCGCCGATGAGCCACACCGCAAGCTTTCTAGACCAT

BO06610.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 669 CG7242-PA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 968 CG7242-RA 92..757 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12962715..12963038 359..682 1620 100 Plus
3R 32079331 3R 12962026..12962242 144..360 1085 100 Plus
3R 32079331 3R 12961836..12961962 17..143 635 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:40:12 has no hits.

BO06610.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:39 Download gff for BO06610.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 1..669 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:50 Download gff for BO06610.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 85..756 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:04 Download gff for BO06610.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..757 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:39 Download gff for BO06610.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 85..756 17..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:24 Download gff for BO06610.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 92..757 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:24 Download gff for BO06610.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12962717..12963038 361..684 99   Plus
3R 12961836..12961962 17..143 100 -> Plus
3R 12962026..12962242 144..360 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:04 Download gff for BO06610.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8787558..8787684 17..143 100 -> Plus
arm_3R 8787748..8787964 144..360 100 -> Plus
arm_3R 8788439..8788760 361..684 99   Plus

BO06610.pep Sequence

Translation from 16 to 700

> BO06610.pep
MAIIMTESSYERRVKALYEKQIHMEALEAKFIKKVFKFNSNLLDVKEAAS
RHQRKVGKLQKVLMERREELDKRVSFIEELDRELEATKLHNLAMKDWFKQ
QKMLAKQRKNEIMESIHTLSKTTRTYINQEALPARVKGVTVLRGDKRDQL
IPFDLKATDVEGLDSLCQHLESLNVDVAQWQQLISLAMDMAMESRAPTTP
PKEADNCKSIIEIDLTSPMSHTASFLDH

BO06610.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-PA 222 CG7242-PA 1..222 1..222 1116 100 Plus