Clone Sequence Records
BO06612.3prime Sequence
725 bp (724 high quality bases) assembled on 2005-12-03
> BO06612.3prime
ATGGTCTAGAAAGCTTGCAGATTGCTTCCCGACTAGTTTTTGTTCTCGCT
CTTCTTGATCGCGTCTGTATCGTTCCTTCGCTTTCTGCTTGGGAGTGTCG
TAGGAGCTTTCGGCGAGGAACATCAGGTATACGGCCACTCCGGCAAAGAT
AAAGGCCAGCAGGACCATGTCAGTCTGGCCTGATATTCTGTTGGTCTCCC
TTTGCACTTTTATTCGATCGTATTTGGCCTGGGCGGCTTGTCTCCGGTCA
AATGATTTACCATAGTGATTTCGCGACCACTCGTCGAAGTCATAGATGGG
CGTACGGCCCGCAGAATCAGATACACGCGATTTCTGAAATCGCGACTTGT
AAAACTTAGTCTCCGCATCGTCCTCGACTACGGGTTCCGCTACATCGTGG
ACATCTTGGGCATATTGGGCGCCTGCCGTATGTACGATTCCCTTGTCGTA
AAGTCGACGCAGCCGGTAATTTCCCAGAATCTCATAAGCCTGATTGATCT
CCCGAAATTTCTTGGCTGCGTTCTCACTTCCTTGGTTCCTGTCCGGATGA
TAAAGCATCGAGAGCTTATAGTAAGCTGCCTTGATCTCGTTCTGCGTGCA
CTGACGCCTGATTCCCAGTGCGTCGTAGTGGCTCATCTGGTGGCGTTGAC
TGAGGTAGAGGCCACGCAGCAGAAGCAGAGGTCGCCACAACATTGGGCTG
TGCTGGTACATGTCGACTGATAACT
BO06612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11035-PA | 696 | CG11035-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11035-RA | 871 | CG11035-RA | 103..795 | 711..19 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8032215..8032907 | 19..711 | 3465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:33:45 has no hits.
BO06612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:34 Download gff for
BO06612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:03 Download gff for
BO06612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:51 Download gff for
BO06612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 95..795 | 19..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:27 Download gff for
BO06612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 95..795 | 19..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:27 Download gff for
BO06612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8032215..8032915 | 19..719 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:51 Download gff for
BO06612.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3857937..3858637 | 19..719 | 99 | | Plus |
BO06612.5prime Sequence
725 bp (724 high quality bases) assembled on 2005-12-03
> BO06612.5prime
GAAGTTATCAGTCGACATGTACCAGCACAGCCCAATGTTGTGGCGACCTC
TGCTTCTGCTGCGTGGCCTCTACCTCAGTCAACGCCACCAGATGAGCCAC
TACGACGCACTGGGAATCAGGCGTCAGTGCACGCAGAACGAGATCAAGGC
AGCTTACTATAAGCTCTCGATGCTTTATCATCCGGACAGGAACCAAGGAA
GTGAGAACGCAGCCAAGAAATTTCGGGAGATCAATCAGGCTTATGAGATT
CTGGGAAATTACCGGCTGCGTCGACTTTACGACAAGGGAATCGTACATAC
GGCAGGCGCCCAATATGCCCAAGATGTCCACGATGTAGCGGAACCCGTAG
TCGAGGACGATGCGGAGACTAAGTTTTACAAGTCGCGATTTCAGAAATCG
CGTGTATCTGATTCTGCGGGCCGTACGCCCATCTATGACTTCGACGAGTG
GTCGCGAAATCACTATGGTAAATCATTTGACCGGAGACAAGCCGCCCAGG
CCAAATACGATCGAATAAAAGTGCAAAGGGAGACCAACAGAATATCAGGC
CAGACTGACATGGTCCTGCTGGCCTTTATCTTTGCCGGAGTGGCCGTATA
CCTGATGTTCCTCGCCGAAAGCTCCTACGACACTCCCAAGCAGAAAGCGA
AGGAACGATACAGACGCGATCAAGAAGAGCGAGAACAAAAACTAGTCGGG
AAGCAATCTGCAAGCTTTCTAGACC
BO06612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11035-PA | 696 | CG11035-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11035-RA | 871 | CG11035-RA | 103..795 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8032215..8032907 | 709..17 | 3465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:06:42 has no hits.
BO06612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:35 Download gff for
BO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:05 Download gff for
BO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:45 Download gff for
BO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 95..795 | 9..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:10 Download gff for
BO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 95..795 | 9..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:10 Download gff for
BO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8032215..8032915 | 9..709 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:45 Download gff for
BO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3857937..3858637 | 9..709 | 99 | | Minus |
BO06612.complete Sequence
727 bp (727 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630461
> BO06612.complete
GAAGTTATCAGTCGACATGTACCAGCACAGCCCAATGTTGTGGCGACCTC
TGCTTCTGCTGCGTGGCCTCTACCTCAGTCAACGCCACCAGATGAGCCAC
TACGACGCACTGGGAATCAGGCGTCAGTGCACGCAGAACGAGATCAAGGC
AGCTTACTATAAGCTCTCGATGCTTTATCATCCGGACAGGAACCAAGGAA
GTGAGAACGCAGCCAAGAAATTTCGGGAGATCAATCAGGCTTATGAGATT
CTGGGAAATTACCGGCTGCGTCGACTTTACGACAAGGGAATCGTACATAC
GGCAGGCGCCCAATATGCCCAAGATGTCCACGATGTAGCGGAACCCGTAG
TCGAGGACGATGCGGAGACTAAGTTTTACAAGTCGCGATTTCAGAAATCG
CGTGTATCTGATTCTGCGGGCCGTACGCCCATCTATGACTTCGACGAGTG
GTCGCGAAATCACTATGGTAAATCATTTGACCGGAGACAAGCCGCCCAGG
CCAAATACGATCGAATAAAAGTGCAAAGGGAGACCAACAGAATATCAGGC
CAGACTGACATGGTCCTGCTGGCCTTTATCTTTGCCGGAGTGGCCGTATA
CCTGATGTTCCTCGCCGAAAGCTCCTACGACACTCCCAAGCAGAAAGCGA
AGGAACGATACAGACGCGATCAAGAAGAGCGAGAACAAAAACTAGTCGGG
AAGCAATCTGCAAGCTTTCTAGACCAT
BO06612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11035-RA | 696 | CG11035-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11035-RA | 871 | CG11035-RA | 103..795 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8032215..8032907 | 709..17 | 3465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:07:10 has no hits.
BO06612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:17 Download gff for
BO06612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:56 Download gff for
BO06612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 33..733 | 9..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:15 Download gff for
BO06612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 103..795 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:17 Download gff for
BO06612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 33..733 | 9..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:21 Download gff for
BO06612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11035-RA | 103..795 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:21 Download gff for
BO06612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8032213..8032907 | 17..711 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:15 Download gff for
BO06612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3857935..3858629 | 17..711 | 99 | | Minus |
BO06612.pep Sequence
Translation from 16 to 727
> BO06612.pep
MYQHSPMLWRPLLLLRGLYLSQRHQMSHYDALGIRRQCTQNEIKAAYYKL
SMLYHPDRNQGSENAAKKFREINQAYEILGNYRLRRLYDKGIVHTAGAQY
AQDVHDVAEPVVEDDAETKFYKSRFQKSRVSDSAGRTPIYDFDEWSRNHY
GKSFDRRQAAQAKYDRIKVQRETNRISGQTDMVLLAFIFAGVAVYLMFLA
ESSYDTPKQKAKERYRRDQEEREQKLVGKQSASFLDH
BO06612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11035-PA | 231 | CG11035-PA | 1..231 | 1..231 | 1206 | 100 | Plus |
| mrj-PG | 346 | CG8448-PG | 2..122 | 26..157 | 166 | 30.8 | Plus |
| mrj-PH | 346 | CG8448-PH | 2..122 | 26..157 | 166 | 30.8 | Plus |
| mrj-PE | 346 | CG8448-PE | 2..122 | 26..157 | 166 | 30.8 | Plus |
| Droj2-PE | 403 | CG8863-PE | 4..67 | 25..91 | 157 | 43.3 | Plus |
