Clone Sequence Records
BO06613.3prime Sequence
791 bp (754 high quality bases) assembled on 2005-12-03
> BO06613.3prime
ATGGTCTAGAAAGCTTGCAGGCACAGGCTTGTCTTGTTCTTGATCCACAT
TTTGGGATTCCTTTGTAGCTTCGGTGCTATCTAATTCCACTGCATTTGTG
TCCTCTGCGCTTTTCGCTTCTGTATTTGAATTCACTGCCTCTTCATTCGA
AGTTTCTTGGGTGTTATTGTCGTCGGATTCCTTGGATGCCACCTGTTGTC
CTTCCTCAGGGCTACTTTCTGCCTTTTCTTCTGTGGGCTCTTCCTCGGAA
TCTGTGTTACTATCCTCTGAGGCTTCCTTAGCCAGTGGCTTCTTGTCCTC
TCTCGGCTTTTTCGCCCTCTGTTTTCTCTTCAACCGTTTGGCTCGTTTCT
TAGCAGTCTTTTCTTCGGCCGCGCGTCTGTTGTCGTCCAACTTCTGCTGG
TAAGCTTCATCTGCTGCTTCGCGGGCACTCTGGTTCTGGATGTTCTTCTG
GCGGGCGTACTCCTTGCGTCGCAAGTGGCGGTACACATGGAACTCGCCGG
AACCCGCTCCAGCACTGCTTCCCATCACATTCCGCACGAACGTGGGCACC
GAGGACATGAAGTCCCGTTCGCGACGCTGCTCCGGTATGACCACGGGCTT
ATCCGGATTCTTCATGAGCTTCTCCAGCTTCAGCCTCTGTAGATCTGTCG
CGGTTTTGATGAACGGCCGCAGAGGCTTGTCCTTCTCATCGGAATCGCTT
TCTCCAGATCCCGCATTCTTTTTCTTTTTCTTTGCCTTCTGTTCGGGCTC
TTTTACCAAATTCTTTATAAGCGACATGTCGACTGATAACT
BO06613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-PA | 762 | CG8441-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-RB | 938 | CG8441-RB | 133..893 | 779..19 | 3805 | 100 | Minus |
| CG8441-RA | 841 | CG8441-RA | 36..796 | 779..19 | 3805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16185167..16185752 | 19..604 | 2930 | 100 | Plus |
| 2R | 25286936 | 2R | 16185811..16185987 | 603..779 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:05:35 has no hits.
BO06613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:36 Download gff for
BO06613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-PA | 1..762 | 18..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:06 Download gff for
BO06613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-PA | 1..762 | 18..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:18 Download gff for
BO06613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 19..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:50:33 Download gff for
BO06613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 19..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:50:33 Download gff for
BO06613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16185167..16185751 | 19..603 | 100 | <- | Plus |
| 2R | 16185812..16185990 | 604..785 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:18 Download gff for
BO06613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12072672..12073256 | 19..603 | 100 | <- | Plus |
| arm_2R | 12073317..12073495 | 604..785 | 97 | | Plus |
BO06613.5prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-03
> BO06613.5prime
GAAGTTATCAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCG
AACAGAAGGCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGAT
TCCGATGAGAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGA
TCTACAGAGGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCG
TGGTCATACCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCC
ACGTTCGTGCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGA
GTTCCATGTGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGA
ACATCCAGAACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAG
AAGTTGGACGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACG
AGCCAAACGGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACA
AGAAGCCACTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAG
GAAGAGCCCACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACA
GGTGGCATCCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATG
AAGAGGCAGTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAAT
GCAGTGGAATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGA
TCAAGAACAAGACAAGCCTGTGCCTGCAAGCTTTCTAGACC
BO06613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-PA | 762 | CG8441-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-RB | 938 | CG8441-RB | 133..893 | 15..775 | 3805 | 100 | Plus |
| CG8441-RA | 841 | CG8441-RA | 36..796 | 15..775 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16185167..16185752 | 775..190 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 16185811..16185987 | 191..15 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:14:34 has no hits.
BO06613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:38 Download gff for
BO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-PA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:07 Download gff for
BO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-PA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:21 Download gff for
BO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:43:23 Download gff for
BO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 9..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:43:23 Download gff for
BO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16185167..16185751 | 191..775 | 100 | <- | Minus |
| 2R | 16185812..16185990 | 9..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:21 Download gff for
BO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12072672..12073256 | 191..775 | 100 | <- | Minus |
| arm_2R | 12073317..12073495 | 9..190 | 97 | | Minus |
BO06613.complete Sequence
793 bp (793 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630462
> BO06613.complete
GAAGTTATCAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCG
AACAGAAGGCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGAT
TCCGATGAGAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGA
TCTACAGAGGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCG
TGGTCATACCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCC
ACGTTCGTGCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGA
GTTCCATGTGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGA
ACATCCAGAACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAG
AAGTTGGACGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACG
AGCCAAACGGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACA
AGAAGCCACTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAG
GAAGAGCCCACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACA
GGTGGCATCCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATG
AAGAGGCAGTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAAT
GCAGTGGAATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGA
TCAAGAACAAGACAAGCCTGTGCCTGCAAGCTTTCTAGACCAT
BO06613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-RB | 762 | CG8441-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
| CG8441-RA | 762 | CG8441-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-RB | 938 | CG8441-RB | 133..893 | 15..775 | 3805 | 100 | Plus |
| CG8441-RA | 841 | CG8441-RA | 36..796 | 15..775 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16185167..16185752 | 775..190 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 16185811..16185987 | 191..15 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:13 has no hits.
BO06613.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:18 Download gff for
BO06613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:57 Download gff for
BO06613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 8..775 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:39 Download gff for
BO06613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 38..796 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:19 Download gff for
BO06613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 8..775 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:58 Download gff for
BO06613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 38..796 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:58 Download gff for
BO06613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16185812..16185985 | 17..190 | 100 | | Minus |
| 2R | 16185165..16185751 | 191..777 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:39 Download gff for
BO06613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12072670..12073256 | 191..777 | 99 | <- | Minus |
| arm_2R | 12073317..12073490 | 17..190 | 100 | | Minus |
BO06613.pep Sequence
Translation from 16 to 793
> BO06613.pep
MSLIKNLVKEPEQKAKKKKKNAGSGESDSDEKDKPLRPFIKTATDLQRLK
LEKLMKNPDKPVVIPEQRRERDFMSSVPTFVRNVMGSSAGAGSGEFHVYR
HLRRKEYARQKNIQNQSAREAADEAYQQKLDDNRRAAEEKTAKKRAKRLK
RKQRAKKPREDKKPLAKEASEDSNTDSEEEPTEEKAESSPEEGQQVASKE
SDDNNTQETSNEEAVNSNTEAKSAEDTNAVELDSTEATKESQNVDQEQDK
PVPASFLDH
BO06613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-PB | 253 | CG8441-PB | 1..253 | 1..253 | 1273 | 100 | Plus |
| CG8441-PA | 253 | CG8441-PA | 1..253 | 1..253 | 1273 | 100 | Plus |
