Clone Sequence Records
BO06614.3prime Sequence
899 bp (841 high quality bases) assembled on 2005-12-03
> BO06614.3prime
ATGGTATAGAAAGCTTGCACTAAAGCTGGCCATAATCTTTGAGCAAATTC
CTTCCAGCGCCTCAGTGGTGACATTCTTAAACTCAGTTAAATCCTCGCCA
GAATCGCAGGCTTTGGATATCTGTTGATCCAGAGGCAGGGAGCCCAACAG
CGGGATTCCCATTTCGGCGCACATGGCAGCGGCTCCTCCGGTTTTGGCTG
GAAAGATTTCGGAGCTATTTCCACAATGGCCGCAACGGAAACTGCTCATA
TTCTCGATCACGCCCACAATGGGGATATTTTGCTTTTTACAAAAGTTGAT
CTCCTTGCGCACGTCCAGCAGAGACACCTCCTGTGGAGTGGTCACCATCA
CGGCGCGCAGGGACTCCGGGTTGGCGTCGTCTTTCAGGTACGAAACCACA
GACAGGTGCTCATCGGAAGTTCCAGGTGGTGTGTCCAGTAGCAGGAGATC
CAGATTTCCCCAGTCCACCTCGCTCAGAAACTGCCTGATCATGCCATTCT
TCTTGGGTCCTCGCCAAATAATGGCATCGTCCACAGAGCCCAGAAGAAAT
CCGATGGACATCAGACACACGTTGTCTTCGATTCCCACAGGTGACCAGCC
GTACCCAGACTGGTGGACACTCTCCCCCAGGGCGCCCATCAAACGCGGTT
GCGATGGACCGCAAATGTCGATATCAAGCACGCCGAAGTTACTGTCCGGA
TTACTTCTGGCCAGATAGCGGGTTAGCAAGCTGGTTACCGTGCTCTTGCC
AACGCCGCCTTTCCCGGACAGGATCAGCAGCTTGTGTTTGACATCTTTCA
TGGATTCGACCACCAAAGCCTTGCCGGGATCTTCGAGTTTCTTGGTGGGA
TCGCTGCAGAGTCCTTGGGTGGGGCAGCCCGAACAGGCACTTCCCTTGC
BO06614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-PA | 936 | CG17904-RA | 53..933 | 899..19 | 4355 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 1075 | CG17904-RA | 135..1015 | 899..19 | 4375 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16732684..16733564 | 899..19 | 4375 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:34:06 has no hits.
BO06614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:39 Download gff for
BO06614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 53..936 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:09 Download gff for
BO06614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 53..936 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:53 Download gff for
BO06614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 135..1019 | 14..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:25 Download gff for
BO06614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 135..1019 | 14..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:25 Download gff for
BO06614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16732684..16733568 | 14..899 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:53 Download gff for
BO06614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16732684..16733568 | 14..899 | 99 | | Minus |
BO06614.5prime Sequence
839 bp (838 high quality bases) assembled on 2005-12-03
> BO06614.5prime
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGG
BO06614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-PA | 936 | CG17904-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 1075 | CG17904-RA | 82..905 | 16..839 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16732631..16733454 | 16..839 | 4120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:01:21 has no hits.
BO06614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:40 Download gff for
BO06614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:10 Download gff for
BO06614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:10 Download gff for
BO06614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 77..905 | 10..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:45:47 Download gff for
BO06614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 77..905 | 10..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:45:47 Download gff for
BO06614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16732626..16733454 | 10..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:10 Download gff for
BO06614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16732626..16733454 | 10..839 | 99 | | Plus |
BO06614.complete Sequence
967 bp assembled on 2008-08-15
> BO06614.complete
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGGATCAACAGATA
TCCAAAGCCTGCGATTCTGGCGAGGATTTAACTGAGTTTAAGAATGTCAC
CACTGAGGCGCTGGAAGGAATTTGCTCAAAGATTATGGCCAGCTTTAGTG
CAAGCTTTCTATACCAT
BO06614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 936 | CG17904-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 1075 | CG17904-RA | 82..1015 | 16..949 | 4670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16732631..16733564 | 16..949 | 4670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:14:46 has no hits.
BO06614.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:04 Download gff for
BO06614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 66..1008 | 10..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:42 Download gff for
BO06614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 83..1015 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:19 Download gff for
BO06614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 72..1004 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:31 Download gff for
BO06614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 83..1015 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:31 Download gff for
BO06614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16732632..16733564 | 17..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:42 Download gff for
BO06614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16732632..16733564 | 17..951 | 99 | | Plus |
BO06614.pep Sequence
Translation from 16 to 967
> BO06614.pep
MQAPPPEHCPGVESEEAGKGSACSGCPNQGLCSDPNKKLEDPGKALVVES
MKDVKHKLLILSGKGGVGKSTVTSLLTRYLARSNPDSNFGVLDIDICGPS
QPRLMGALGESVHQSGYGWSPVGIEDNVCLMSIGFLLGSVDDAIIWRGPK
KNGMIRQFLSEVDWGNLDLLLLDTPPGTSDEHLSVVSYLKDDANPESLRA
VMVTTPQEVSLLDVRKEINFCKKQNIPIVGVIENMSSFRCGHCGNSSEIF
PAKTGGAAAMCAEMGIPLLGSLPLDQQISKACDSGEDLTEFKNVTTEALE
GICSKIMASFSASFLYH
BO06614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-PA | 311 | CG17904-PA | 1..311 | 1..311 | 1635 | 100 | Plus |
CG4858-PA | 260 | CG4858-PA | 5..254 | 54..306 | 556 | 47.9 | Plus |
CG3262-PE | 293 | CG3262-PE | 38..252 | 54..285 | 305 | 36.6 | Plus |
CG3262-PD | 293 | CG3262-PD | 38..252 | 54..285 | 305 | 36.6 | Plus |
CG3262-PF | 207 | CG3262-PF | 22..166 | 127..285 | 229 | 35.8 | Plus |