Clone BO06614 Report

Search the DGRC for BO06614

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG17904-RA
Protein status:BO06614.pep: Imported from assembly
Sequenced Size:967

Clone Sequence Records

BO06614.3prime Sequence

899 bp (841 high quality bases) assembled on 2005-12-03

> BO06614.3prime
ATGGTATAGAAAGCTTGCACTAAAGCTGGCCATAATCTTTGAGCAAATTC
CTTCCAGCGCCTCAGTGGTGACATTCTTAAACTCAGTTAAATCCTCGCCA
GAATCGCAGGCTTTGGATATCTGTTGATCCAGAGGCAGGGAGCCCAACAG
CGGGATTCCCATTTCGGCGCACATGGCAGCGGCTCCTCCGGTTTTGGCTG
GAAAGATTTCGGAGCTATTTCCACAATGGCCGCAACGGAAACTGCTCATA
TTCTCGATCACGCCCACAATGGGGATATTTTGCTTTTTACAAAAGTTGAT
CTCCTTGCGCACGTCCAGCAGAGACACCTCCTGTGGAGTGGTCACCATCA
CGGCGCGCAGGGACTCCGGGTTGGCGTCGTCTTTCAGGTACGAAACCACA
GACAGGTGCTCATCGGAAGTTCCAGGTGGTGTGTCCAGTAGCAGGAGATC
CAGATTTCCCCAGTCCACCTCGCTCAGAAACTGCCTGATCATGCCATTCT
TCTTGGGTCCTCGCCAAATAATGGCATCGTCCACAGAGCCCAGAAGAAAT
CCGATGGACATCAGACACACGTTGTCTTCGATTCCCACAGGTGACCAGCC
GTACCCAGACTGGTGGACACTCTCCCCCAGGGCGCCCATCAAACGCGGTT
GCGATGGACCGCAAATGTCGATATCAAGCACGCCGAAGTTACTGTCCGGA
TTACTTCTGGCCAGATAGCGGGTTAGCAAGCTGGTTACCGTGCTCTTGCC
AACGCCGCCTTTCCCGGACAGGATCAGCAGCTTGTGTTTGACATCTTTCA
TGGATTCGACCACCAAAGCCTTGCCGGGATCTTCGAGTTTCTTGGTGGGA
TCGCTGCAGAGTCCTTGGGTGGGGCAGCCCGAACAGGCACTTCCCTTGC

BO06614.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-PA 936 CG17904-RA 53..933 899..19 4355 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 1075 CG17904-RA 135..1015 899..19 4375 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16732684..16733564 899..19 4375 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 16:34:06 has no hits.

BO06614.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:39 Download gff for BO06614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 53..936 15..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:09 Download gff for BO06614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 53..936 15..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:53 Download gff for BO06614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 135..1019 14..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:25 Download gff for BO06614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 135..1019 14..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:25 Download gff for BO06614.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16732684..16733568 14..899 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:53 Download gff for BO06614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16732684..16733568 14..899 99   Minus

BO06614.5prime Sequence

839 bp (838 high quality bases) assembled on 2005-12-03

> BO06614.5prime
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGG

BO06614.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-PA 936 CG17904-RA 1..823 17..839 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 1075 CG17904-RA 82..905 16..839 4120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16732631..16733454 16..839 4120 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:01:21 has no hits.

BO06614.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:40 Download gff for BO06614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:10 Download gff for BO06614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:10 Download gff for BO06614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 77..905 10..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:45:47 Download gff for BO06614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 77..905 10..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:45:47 Download gff for BO06614.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16732626..16733454 10..839 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:10 Download gff for BO06614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16732626..16733454 10..839 99   Plus

BO06614.complete Sequence

967 bp assembled on 2008-08-15

> BO06614.complete
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGGATCAACAGATA
TCCAAAGCCTGCGATTCTGGCGAGGATTTAACTGAGTTTAAGAATGTCAC
CACTGAGGCGCTGGAAGGAATTTGCTCAAAGATTATGGCCAGCTTTAGTG
CAAGCTTTCTATACCAT

BO06614.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 936 CG17904-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 1075 CG17904-RA 82..1015 16..949 4670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16732631..16733564 16..949 4670 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:14:46 has no hits.

BO06614.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:04 Download gff for BO06614.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 66..1008 10..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:42 Download gff for BO06614.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 83..1015 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:19 Download gff for BO06614.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 72..1004 17..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:31 Download gff for BO06614.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 83..1015 17..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:31 Download gff for BO06614.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16732632..16733564 17..951 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:42 Download gff for BO06614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16732632..16733564 17..951 99   Plus

BO06614.pep Sequence

Translation from 16 to 967

> BO06614.pep
MQAPPPEHCPGVESEEAGKGSACSGCPNQGLCSDPNKKLEDPGKALVVES
MKDVKHKLLILSGKGGVGKSTVTSLLTRYLARSNPDSNFGVLDIDICGPS
QPRLMGALGESVHQSGYGWSPVGIEDNVCLMSIGFLLGSVDDAIIWRGPK
KNGMIRQFLSEVDWGNLDLLLLDTPPGTSDEHLSVVSYLKDDANPESLRA
VMVTTPQEVSLLDVRKEINFCKKQNIPIVGVIENMSSFRCGHCGNSSEIF
PAKTGGAAAMCAEMGIPLLGSLPLDQQISKACDSGEDLTEFKNVTTEALE
GICSKIMASFSASFLYH

BO06614.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-PA 311 CG17904-PA 1..311 1..311 1635 100 Plus
CG4858-PA 260 CG4858-PA 5..254 54..306 556 47.9 Plus
CG3262-PE 293 CG3262-PE 38..252 54..285 305 36.6 Plus
CG3262-PD 293 CG3262-PD 38..252 54..285 305 36.6 Plus
CG3262-PF 207 CG3262-PF 22..166 127..285 229 35.8 Plus