Clone Sequence Records
BO06620.3prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-03
> BO06620.3prime
ATGGTCTAGAAAGCTTGCGCCCTTTAGCGTGGACTCGAGCTCATTGTTCG
CCAGCAGTTCCTTAATAATATCGAGTCCGCCGATAAGTTCACCCTTGACG
TAAACCTGGGGATATGTGGGCCAGTCGGAGTAGGTTTTCAGGCCTTGACG
CACTTCTTCGTCGCCGAGGATGTCAAATGTCTCGTACGGCAAGTTGGTTT
CGTTCACAATGCCGATGAGCTGCTTGGAGAATCCGCAACGCGGTCCATTT
CGGTCGCCCTTCATGAATATCATCAGCGGAGCTGTATTGATTAGGGCCTT
TAGGCGTTCCTCCAACGTTTGTCCTGTTGCCGCCGCGCTGCTTGCGTTTT
CGGCCAACTTTTTGGATTTGGCGCTTATGGCGGCGATGTCTACACCATCG
ACACGGTCAACGGCGGAGCCCTTGGCGAAGAATATGACTGTGGGCACGGC
CTCGATCTGATGTTTCATGGAAATCTCGGGAAATTGTTCAGCGTTTAGGC
TGATGAACTGCAGTTTTTCGCCAGTAATCTTGGCCAGCTCCTCCAGCGCG
TCTTTCACCTGACCGCATTGCTCTGCCCATTCGGCGGCGAATAGAGCTAC
GGTCGTCTTATCCGCATTAATGTACTTCTGGTACTCCTCGGCAGCCGACA
CGTTCACCACGGGCATGTCGACTGATAACT
BO06620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-PA | 651 | CG6523-RA | 1..648 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 837 | CG6523-RA | 84..732 | 667..19 | 3245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13366802..13367067 | 459..194 | 1330 | 100 | Minus |
2L | 23513712 | 2L | 13366530..13366740 | 667..457 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 13367131..13367305 | 193..19 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:34:44 has no hits.
BO06620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:50 Download gff for
BO06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:25 Download gff for
BO06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:02 Download gff for
BO06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..737 | 11..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:54 Download gff for
BO06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..737 | 11..667 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:54 Download gff for
BO06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13366530..13366740 | 457..667 | 100 | -> | Minus |
2L | 13366805..13367067 | 194..456 | 100 | -> | Minus |
2L | 13367131..13367310 | 11..193 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:02 Download gff for
BO06620.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13366530..13366740 | 457..667 | 100 | -> | Minus |
arm_2L | 13366805..13367067 | 194..456 | 100 | -> | Minus |
arm_2L | 13367131..13367310 | 11..193 | 97 | | Minus |
BO06620.5prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-03
> BO06620.5prime
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCGCAAGCTTTCTAGACC
BO06620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-PA | 651 | CG6523-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 837 | CG6523-RA | 84..732 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13366802..13367067 | 224..489 | 1330 | 100 | Plus |
2L | 23513712 | 2L | 13366530..13366740 | 16..226 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 13367131..13367305 | 490..664 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:05:02 has no hits.
BO06620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:51 Download gff for
BO06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:26 Download gff for
BO06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:01:28 Download gff for
BO06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..737 | 16..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:12 Download gff for
BO06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 84..737 | 16..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:12 Download gff for
BO06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13366530..13366740 | 16..226 | 100 | -> | Plus |
2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
2L | 13367131..13367310 | 490..672 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:01:28 Download gff for
BO06620.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13366530..13366740 | 16..226 | 100 | -> | Plus |
arm_2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
arm_2L | 13367131..13367310 | 490..672 | 97 | | Plus |
BO06620.complete Sequence
682 bp (682 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630463
> BO06620.complete
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCGCAAGCTTTCTAGACCAT
BO06620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 651 | CG6523-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-RA | 837 | CG6523-RA | 84..732 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13366802..13367067 | 224..489 | 1330 | 100 | Plus |
2L | 23513712 | 2L | 13366530..13366740 | 16..226 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 13367131..13367305 | 490..664 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:03:42 has no hits.
BO06620.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:20 Download gff for
BO06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:59 Download gff for
BO06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 65..718 | 16..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:52 Download gff for
BO06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 85..732 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:20 Download gff for
BO06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 65..718 | 16..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:33 Download gff for
BO06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6523-RA | 85..732 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:33 Download gff for
BO06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13367131..13367305 | 490..666 | 98 | | Plus |
2L | 13366531..13366740 | 17..226 | 100 | -> | Plus |
2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:52 Download gff for
BO06620.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13367131..13367305 | 490..666 | 98 | | Plus |
arm_2L | 13366531..13366740 | 17..226 | 100 | -> | Plus |
arm_2L | 13366805..13367067 | 227..489 | 100 | -> | Plus |
BO06620.pep Sequence
Translation from 16 to 682
> BO06620.pep
MPVVNVSAAEEYQKYINADKTTVALFAAEWAEQCGQVKDALEELAKITGE
KLQFISLNAEQFPEISMKHQIEAVPTVIFFAKGSAVDRVDGVDIAAISAK
SKKLAENASSAAATGQTLEERLKALINTAPLMIFMKGDRNGPRCGFSKQL
IGIVNETNLPYETFDILGDEEVRQGLKTYSDWPTYPQVYVKGELIGGLDI
IKELLANNELESTLKGASFLDH
BO06620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6523-PA | 216 | CG6523-PA | 1..216 | 1..216 | 1089 | 100 | Plus |
CG14407-PA | 159 | CG14407-PA | 15..142 | 94..220 | 247 | 36.7 | Plus |