Clone BO06620 Report

Search the DGRC for BO06620

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG6523-RA
Protein status:BO06620.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO06620.3prime Sequence

680 bp (679 high quality bases) assembled on 2005-12-03

> BO06620.3prime
ATGGTCTAGAAAGCTTGCGCCCTTTAGCGTGGACTCGAGCTCATTGTTCG
CCAGCAGTTCCTTAATAATATCGAGTCCGCCGATAAGTTCACCCTTGACG
TAAACCTGGGGATATGTGGGCCAGTCGGAGTAGGTTTTCAGGCCTTGACG
CACTTCTTCGTCGCCGAGGATGTCAAATGTCTCGTACGGCAAGTTGGTTT
CGTTCACAATGCCGATGAGCTGCTTGGAGAATCCGCAACGCGGTCCATTT
CGGTCGCCCTTCATGAATATCATCAGCGGAGCTGTATTGATTAGGGCCTT
TAGGCGTTCCTCCAACGTTTGTCCTGTTGCCGCCGCGCTGCTTGCGTTTT
CGGCCAACTTTTTGGATTTGGCGCTTATGGCGGCGATGTCTACACCATCG
ACACGGTCAACGGCGGAGCCCTTGGCGAAGAATATGACTGTGGGCACGGC
CTCGATCTGATGTTTCATGGAAATCTCGGGAAATTGTTCAGCGTTTAGGC
TGATGAACTGCAGTTTTTCGCCAGTAATCTTGGCCAGCTCCTCCAGCGCG
TCTTTCACCTGACCGCATTGCTCTGCCCATTCGGCGGCGAATAGAGCTAC
GGTCGTCTTATCCGCATTAATGTACTTCTGGTACTCCTCGGCAGCCGACA
CGTTCACCACGGGCATGTCGACTGATAACT

BO06620.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-PA 651 CG6523-RA 1..648 666..19 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 837 CG6523-RA 84..732 667..19 3245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13366802..13367067 459..194 1330 100 Minus
2L 23513712 2L 13366530..13366740 667..457 1055 100 Minus
2L 23513712 2L 13367131..13367305 193..19 875 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:34:44 has no hits.

BO06620.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:50 Download gff for BO06620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:25 Download gff for BO06620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:02 Download gff for BO06620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..737 11..667 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:54 Download gff for BO06620.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..737 11..667 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:54 Download gff for BO06620.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13366530..13366740 457..667 100 -> Minus
2L 13366805..13367067 194..456 100 -> Minus
2L 13367131..13367310 11..193 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:02 Download gff for BO06620.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13366530..13366740 457..667 100 -> Minus
arm_2L 13366805..13367067 194..456 100 -> Minus
arm_2L 13367131..13367310 11..193 97   Minus

BO06620.5prime Sequence

680 bp (679 high quality bases) assembled on 2005-12-03

> BO06620.5prime
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCGCAAGCTTTCTAGACC

BO06620.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-PA 651 CG6523-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 837 CG6523-RA 84..732 16..664 3245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13366802..13367067 224..489 1330 100 Plus
2L 23513712 2L 13366530..13366740 16..226 1055 100 Plus
2L 23513712 2L 13367131..13367305 490..664 875 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:05:02 has no hits.

BO06620.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:51 Download gff for BO06620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:26 Download gff for BO06620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:01:28 Download gff for BO06620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..737 16..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:12 Download gff for BO06620.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 84..737 16..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:12 Download gff for BO06620.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13366530..13366740 16..226 100 -> Plus
2L 13366805..13367067 227..489 100 -> Plus
2L 13367131..13367310 490..672 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:01:28 Download gff for BO06620.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13366530..13366740 16..226 100 -> Plus
arm_2L 13366805..13367067 227..489 100 -> Plus
arm_2L 13367131..13367310 490..672 97   Plus

BO06620.complete Sequence

682 bp (682 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630463

> BO06620.complete
GAAGTTATCAGTCGACATGCCCGTGGTGAACGTGTCGGCTGCCGAGGAGT
ACCAGAAGTACATTAATGCGGATAAGACGACCGTAGCTCTATTCGCCGCC
GAATGGGCAGAGCAATGCGGTCAGGTGAAAGACGCGCTGGAGGAGCTGGC
CAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAAT
TTCCCGAGATTTCCATGAAACATCAGATCGAGGCCGTGCCCACAGTCATA
TTCTTCGCCAAGGGCTCCGCCGTTGACCGTGTCGATGGTGTAGACATCGC
CGCCATAAGCGCCAAATCCAAAAAGTTGGCCGAAAACGCAAGCAGCGCGG
CGGCAACAGGACAAACGTTGGAGGAACGCCTAAAGGCCCTAATCAATACA
GCTCCGCTGATGATATTCATGAAGGGCGACCGAAATGGACCGCGTTGCGG
ATTCTCCAAGCAGCTCATCGGCATTGTGAACGAAACCAACTTGCCGTACG
AGACATTTGACATCCTCGGCGACGAAGAAGTGCGTCAAGGCCTGAAAACC
TACTCCGACTGGCCCACATATCCCCAGGTTTACGTCAAGGGTGAACTTAT
CGGCGGACTCGATATTATTAAGGAACTGCTGGCGAACAATGAGCTCGAGT
CCACGCTAAAGGGCGCAAGCTTTCTAGACCAT

BO06620.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 651 CG6523-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-RA 837 CG6523-RA 84..732 16..664 3245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13366802..13367067 224..489 1330 100 Plus
2L 23513712 2L 13366530..13366740 16..226 1055 100 Plus
2L 23513712 2L 13367131..13367305 490..664 875 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:03:42 has no hits.

BO06620.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:20 Download gff for BO06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:59 Download gff for BO06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 65..718 16..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:52 Download gff for BO06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 85..732 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:20 Download gff for BO06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 65..718 16..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:33 Download gff for BO06620.complete
Subject Subject Range Query Range Percent Splice Strand
CG6523-RA 85..732 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:33 Download gff for BO06620.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13367131..13367305 490..666 98   Plus
2L 13366531..13366740 17..226 100 -> Plus
2L 13366805..13367067 227..489 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:52 Download gff for BO06620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13367131..13367305 490..666 98   Plus
arm_2L 13366531..13366740 17..226 100 -> Plus
arm_2L 13366805..13367067 227..489 100 -> Plus

BO06620.pep Sequence

Translation from 16 to 682

> BO06620.pep
MPVVNVSAAEEYQKYINADKTTVALFAAEWAEQCGQVKDALEELAKITGE
KLQFISLNAEQFPEISMKHQIEAVPTVIFFAKGSAVDRVDGVDIAAISAK
SKKLAENASSAAATGQTLEERLKALINTAPLMIFMKGDRNGPRCGFSKQL
IGIVNETNLPYETFDILGDEEVRQGLKTYSDWPTYPQVYVKGELIGGLDI
IKELLANNELESTLKGASFLDH

BO06620.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6523-PA 216 CG6523-PA 1..216 1..216 1089 100 Plus
CG14407-PA 159 CG14407-PA 15..142 94..220 247 36.7 Plus