Clone Sequence Records
BO06621.3prime Sequence
956 bp (818 high quality bases) assembled on 2005-12-03
> BO06621.3prime
ATGGTCTAGAAAGCTTGCATGCTTCTCGGCGGCAATGCAGAGTTTGGCCA
GAAGGGCGGTGAGCTGCAGCAGCGAGTTGATACCATCGATAATCTTCATG
TGGGTGATTCCGATCTCACGGATAAAGTCCAGCTTCAAATGCTCATCGAT
GTTGATGCGCTTGCAGACACGGAATATGTTCGCAATGATGTCCTCCGGCG
AGTATCCCAGCTTCCACAGCTTGGCCAGGATTTTGTAGGCCTTGTGTATG
TCGTTAGCAGCGCAATGGTGGATCATCTCCTCTAGGAGCTTTGGGTGCGG
CTCGTCGCAGACCTTAAAGACGTTCTCAGCGGTGATGTCGCCAAATCCCT
GAGCGGTGGACTGCAGGTTGTTCAGTCCCTGTCGCATATCACCTTGGGCA
GTGAATACGATGGCCTCAAGTCCGTCCTCCGTGTAGTTAAGCTTCTCCCA
CTTGGCCACCTCGATGAGCTTGGCCAGAACTTGCGCATCGGACAGCTTGG
TGAATCGTAGCATGGCGCAGCGGGACTGGATAGGCTCTATGATCTTCTCG
CTGGTGTTGCAGGCCAGGGCAAAACGAGTGGTGCTGCTGTAGATCTCCAT
GGTCCGGCGCAGTGCCTGCTGGGCACCCTCCGTCATGCTGTCCGCCTCGT
CCAGAATCACAATCTTGTGCCTGCCCCGCGGCAGTGTCACCTTCTGCTGA
GCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCTCGTTCATTGGA
GGCATTCAGCTCGAGGACAGCCTCCTTGTAGCTGTCTCCCAGGAGAATCC
TGGCCAGACACTGGATGGTGGTTGTCTTGCCCACGCCAGGAGGACCAGCA
ATAATAATATTGGGTGCATTTCCCTGGGTGGCGAATACGGATAGTCTTGC
TACGGTATCCTCATTGCCCACTATCTCCTTGAACTCACGGGGCGGTACTT
TCTCAT
BO06621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14999-PA | 996 | RfC40-RA | 77..993 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC4-RA | 1127 | CG14999-RA | 116..1048 | 950..19 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4134939..4135766 | 19..846 | 4140 | 100 | Plus |
| 3L | 28110227 | 3L | 4135818..4135923 | 846..950 | 480 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:42:07 has no hits.
BO06621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:52 Download gff for
BO06621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC40-PA | 55..996 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:27 Download gff for
BO06621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14999-PA | 55..996 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:43:16 Download gff for
BO06621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 110..1055 | 10..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:29 Download gff for
BO06621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 110..1055 | 10..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:29 Download gff for
BO06621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4134932..4135766 | 10..846 | 99 | <- | Plus |
| 3L | 4135819..4135927 | 847..956 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:43:16 Download gff for
BO06621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4134932..4135766 | 10..846 | 99 | <- | Plus |
| arm_3L | 4135819..4135927 | 847..956 | 97 | | Plus |
BO06621.5prime Sequence
917 bp (830 high quality bases) assembled on 2005-12-03
> BO06621.5prime
GAAGTTATCAGTCGACATGCCGGAAGAACCAGAGAAAACGGCGGACGACA
AGCGCAGTCACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAG
GAGATAGTGGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCAC
CCAGGGAAATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCA
AGACAACCACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTAC
AAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT
GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGC
GGGGCAGGCACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAG
GGTGCCCAGCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCAC
TCGTTTTGCCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCC
AGTCCCGCTGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTT
CTGGCCAAGCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGA
GGACGGACTTGAGGCCATCGTATTCACTGCCCAAGGTGATATGCGACAGG
GACTGAACAACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCT
GAGAACGTCTTTAAGGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGA
GATGATCCACCATTGCGCTGCTAACGACATACACAAGGCCTACAAAATCC
TGGCCAAGCTGTGGAAGCTGGGATACTCGCCGGAGGACATCATTGCGAAC
ATATTCCGTGTCTGCNAGCGCATCAACATCGATGAGCATTTGAAGCTGGA
CTTTATCCGTGAGATCG
BO06621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14999-PA | 996 | RfC40-RA | 1..901 | 17..917 | 4486 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC4-RA | 1127 | CG14999-RA | 56..956 | 17..917 | 4494 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4135031..4135766 | 917..182 | 3669 | 99.9 | Minus |
| 3L | 28110227 | 3L | 4135818..4135983 | 182..17 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:55:57 has no hits.
BO06621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:54 Download gff for
BO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC40-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:28 Download gff for
BO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14999-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:55 Download gff for
BO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 50..956 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:19 Download gff for
BO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 50..956 | 9..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:19 Download gff for
BO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4135031..4135766 | 182..917 | 99 | <- | Minus |
| 3L | 4135819..4135989 | 9..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:55 Download gff for
BO06621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4135031..4135766 | 182..917 | 99 | <- | Minus |
| arm_3L | 4135819..4135989 | 9..181 | 97 | | Minus |
BO06621.complete Sequence
1027 bp (1027 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630464
> BO06621.complete
GAAGTTATCAGTCGACATGCCGGAAGAACCAGAGAAAACGGCGGACGACA
AGCGCAGTCACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAG
GAGATAGTGGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCAC
CCAGGGAAATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCA
AGACAACCACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTAC
AAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT
GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGC
GGGGCAGGCACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAG
GGTGCCCAGCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCAC
TCGTTTTGCCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCC
AGTCCCGCTGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTT
CTGGCCAAGCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGA
GGACGGACTTGAGGCCATCGTATTCACTGCCCAAGGTGATATGCGACAGG
GACTGAACAACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCT
GAGAACGTCTTTAAGGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGA
GATGATCCACCATTGCGCTGCTAACGACATACACAAGGCCTACAAAATCC
TGGCCAAGCTGTGGAAGCTGGGATACTCGCCGGAGGACATCATTGCGAAC
ATATTCCGTGTCTGCAAGCGCATCAACATCGATGAGCATTTGAAGCTGGA
CTTTATCCGTGAGATCGGAATCACCCACATGAAGATTATCGATGGTATCA
ACTCGCTGCTGCAGCTCACCGCCCTTCTGGCCAAACTCTGCATTGCCGCC
GAGAAGCATGCAAGCTTTCTAGACCAT
BO06621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC4-RA | 996 | CG14999-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC4-RA | 1127 | CG14999-RA | 56..1048 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4134939..4135766 | 1009..182 | 4140 | 100 | Minus |
| 3L | 28110227 | 3L | 4135818..4135983 | 182..17 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:51:07 has no hits.
BO06621.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:21 Download gff for
BO06621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC40-RA | 1..996 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:01 Download gff for
BO06621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC40-RA | 51..1056 | 9..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:46 Download gff for
BO06621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 56..1048 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:21 Download gff for
BO06621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC40-RA | 51..1056 | 9..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:11 Download gff for
BO06621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 56..1048 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:11 Download gff for
BO06621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4134937..4135766 | 182..1011 | 99 | <- | Minus |
| 3L | 4135819..4135983 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:46 Download gff for
BO06621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4134937..4135766 | 182..1011 | 99 | <- | Minus |
| arm_3L | 4135819..4135983 | 17..181 | 100 | | Minus |
BO06621.pep Sequence
Translation from 16 to 1027
> BO06621.pep
MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAP
NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKI
KMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA
CNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEA
IVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHC
AANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREI
GITHMKIIDGINSLLQLTALLAKLCIAAEKHASFLDH
BO06621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC4-PA | 331 | CG14999-PA | 1..331 | 1..331 | 1698 | 100 | Plus |
| RfC3-PA | 332 | CG5313-PA | 11..326 | 16..329 | 486 | 34.4 | Plus |
| CG8142-PA | 353 | CG8142-PA | 31..344 | 17..320 | 467 | 35.4 | Plus |
| RfC38-PB | 356 | CG6258-PB | 4..351 | 18..336 | 238 | 25.1 | Plus |
| RfC38-PA | 356 | CG6258-PA | 4..351 | 18..336 | 238 | 25.1 | Plus |
