Clone BO06623 Report

Search the DGRC for BO06623

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG11820-RA
Protein status:BO06623.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO06623.3prime Sequence

725 bp (724 high quality bases) assembled on 2005-12-03

> BO06623.3prime
ATGGTCTAGAAAGCTTGCGTTATCATTACGGCGACGTCGTTGGATTTTTC
GTTCCAGGTCCCTGGACTTTTGCTTCTTGGCGGGAACGAATACGTCGGGC
TCGTCGGGTTCATTTTGGTTAGAAGACTTGGGCTGAACCATGTTGGTATC
GAAGTTGAACTCATCGTTGGAGTTGGCCAGTTGTCTGCGAAACACTGCGG
CGCTGTTGGTGATCCGTGCTTTGGGATGCGAAGGAGGTAGCCACGAAACA
GTCTGTGTGGTCGAGTTATAGAAGTAAAACGCCTTGCAGCCCTTATCGTA
GACATCCTTCCAGCCCGCCTCCAGTGGATACTTCCGCAGCAATCTCTTGT
AGCGCTTGAGATACCTATGGCTGGGCTGCGAAAGCGGCGAGCTGTTGAAC
TTGTTTACGCAGTACAGCGAGCACTTGTGGTATATGTTGTATTTGTTGGG
ACACAGCTTGTAGCCATGGTAGGACTCGTTCACGCCGATCCGCTCCTTGA
TGCGGTGCGACCAGAACTTCTCCTCGACGCTCCTGCGCTTGGGCTCCGGC
GATGTGTCCTCCTTGTACGGGTAAGGGCCGCTCTTGTCATCGTCATCGTA
GTTCTCGGCTATAATCTCTTCTATAGCTTCTGAAATCGGTGCTGCTCCCG
ACTGTTTGGTCACAAGTCCGCGCTTCTTCAGGCGCTGCAATAGTGCAGCT
GGCAGGCTCATGTCGACTGATAACT

BO06623.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11820-PA 696 CG11820-RA 1..693 711..19 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 868 CG11820-RA 88..780 711..19 3465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25066001..25066630 648..19 3150 100 Minus
3R 32079331 3R 25065878..25065942 711..647 325 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:04:33 has no hits.

BO06623.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:57 Download gff for BO06623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 18..711 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:33 Download gff for BO06623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 18..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:26 Download gff for BO06623.3prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..784 13..721 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:05 Download gff for BO06623.3prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..784 13..721 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:05 Download gff for BO06623.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25065870..25065941 648..721 94 -> Minus
3R 25066002..25066632 19..647 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:26 Download gff for BO06623.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20891592..20891663 648..721 94 -> Minus
arm_3R 20891724..20892354 19..647 99 -> Minus

BO06623.5prime Sequence

725 bp (724 high quality bases) assembled on 2005-12-03

> BO06623.5prime
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACGCAAGCTTTCTAGACC

BO06623.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11820-PA 696 CG11820-RA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 868 CG11820-RA 88..780 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25066001..25066630 80..709 3150 100 Plus
3R 32079331 3R 25065878..25065942 17..81 325 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:01:38 has no hits.

BO06623.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:58 Download gff for BO06623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 17..710 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:34 Download gff for BO06623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:14 Download gff for BO06623.5prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..784 7..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:46:50 Download gff for BO06623.5prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..784 7..715 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:46:50 Download gff for BO06623.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25065870..25065941 7..80 94 -> Plus
3R 25066002..25066632 81..709 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:14 Download gff for BO06623.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20891592..20891663 7..80 94 -> Plus
arm_3R 20891724..20892354 81..709 99 -> Plus

BO06623.complete Sequence

727 bp (727 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630465

> BO06623.complete
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACGCAAGCTTTCTAGACCAT

BO06623.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 696 CG11820-PA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 868 CG11820-RA 88..780 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25066001..25066630 80..709 3150 100 Plus
3R 32079331 3R 25065878..25065942 17..81 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:38:59 has no hits.

BO06623.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:23 Download gff for BO06623.complete
Subject Subject Range Query Range Percent Splice Strand
CG11820-RA 1..696 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:04 Download gff for BO06623.complete
Subject Subject Range Query Range Percent Splice Strand
CG11820-RA 67..771 7..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:55 Download gff for BO06623.complete
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 88..780 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:23 Download gff for BO06623.complete
Subject Subject Range Query Range Percent Splice Strand
CG11820-RA 67..771 7..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:29 Download gff for BO06623.complete
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 88..780 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:29 Download gff for BO06623.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25065878..25065941 17..80 100 -> Plus
3R 25066002..25066630 81..711 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:55 Download gff for BO06623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20891600..20891663 17..80 100 -> Plus
arm_3R 20891724..20892352 81..711 99   Plus

BO06623.pep Sequence

Translation from 16 to 727

> BO06623.pep
MSLPAALLQRLKKRGLVTKQSGAAPISEAIEEIIAENYDDDDKSGPYPYK
EDTSPEPKRRSVEEKFWSHRIKERIGVNESYHGYKLCPNKYNIYHKCSLY
CVNKFNSSPLSQPSHRYLKRYKRLLRKYPLEAGWKDVYDKGCKAFYFYNS
TTQTVSWLPPSHPKARITNSAAVFRRQLANSNDEFNFDTNMVQPKSSNQN
EPDEPDVFVPAKKQKSRDLERKIQRRRRNDNASFLDH

BO06623.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-PA 231 CG11820-PA 1..231 1..231 1242 100 Plus