Clone Sequence Records
BO06623.3prime Sequence
725 bp (724 high quality bases) assembled on 2005-12-03
> BO06623.3prime
ATGGTCTAGAAAGCTTGCGTTATCATTACGGCGACGTCGTTGGATTTTTC
GTTCCAGGTCCCTGGACTTTTGCTTCTTGGCGGGAACGAATACGTCGGGC
TCGTCGGGTTCATTTTGGTTAGAAGACTTGGGCTGAACCATGTTGGTATC
GAAGTTGAACTCATCGTTGGAGTTGGCCAGTTGTCTGCGAAACACTGCGG
CGCTGTTGGTGATCCGTGCTTTGGGATGCGAAGGAGGTAGCCACGAAACA
GTCTGTGTGGTCGAGTTATAGAAGTAAAACGCCTTGCAGCCCTTATCGTA
GACATCCTTCCAGCCCGCCTCCAGTGGATACTTCCGCAGCAATCTCTTGT
AGCGCTTGAGATACCTATGGCTGGGCTGCGAAAGCGGCGAGCTGTTGAAC
TTGTTTACGCAGTACAGCGAGCACTTGTGGTATATGTTGTATTTGTTGGG
ACACAGCTTGTAGCCATGGTAGGACTCGTTCACGCCGATCCGCTCCTTGA
TGCGGTGCGACCAGAACTTCTCCTCGACGCTCCTGCGCTTGGGCTCCGGC
GATGTGTCCTCCTTGTACGGGTAAGGGCCGCTCTTGTCATCGTCATCGTA
GTTCTCGGCTATAATCTCTTCTATAGCTTCTGAAATCGGTGCTGCTCCCG
ACTGTTTGGTCACAAGTCCGCGCTTCTTCAGGCGCTGCAATAGTGCAGCT
GGCAGGCTCATGTCGACTGATAACT
BO06623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11820-PA | 696 | CG11820-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 868 | CG11820-RA | 88..780 | 711..19 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25066001..25066630 | 648..19 | 3150 | 100 | Minus |
3R | 32079331 | 3R | 25065878..25065942 | 711..647 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:04:33 has no hits.
BO06623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:57 Download gff for
BO06623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:33 Download gff for
BO06623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:26 Download gff for
BO06623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..784 | 13..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:05 Download gff for
BO06623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..784 | 13..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:05 Download gff for
BO06623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25065870..25065941 | 648..721 | 94 | -> | Minus |
3R | 25066002..25066632 | 19..647 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:26 Download gff for
BO06623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20891592..20891663 | 648..721 | 94 | -> | Minus |
arm_3R | 20891724..20892354 | 19..647 | 99 | -> | Minus |
BO06623.5prime Sequence
725 bp (724 high quality bases) assembled on 2005-12-03
> BO06623.5prime
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACGCAAGCTTTCTAGACC
BO06623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11820-PA | 696 | CG11820-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 868 | CG11820-RA | 88..780 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25066001..25066630 | 80..709 | 3150 | 100 | Plus |
3R | 32079331 | 3R | 25065878..25065942 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:01:38 has no hits.
BO06623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:58 Download gff for
BO06623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:34 Download gff for
BO06623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:14 Download gff for
BO06623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..784 | 7..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:46:50 Download gff for
BO06623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..784 | 7..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:46:50 Download gff for
BO06623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25065870..25065941 | 7..80 | 94 | -> | Plus |
3R | 25066002..25066632 | 81..709 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:14 Download gff for
BO06623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20891592..20891663 | 7..80 | 94 | -> | Plus |
arm_3R | 20891724..20892354 | 81..709 | 99 | -> | Plus |
BO06623.complete Sequence
727 bp (727 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630465
> BO06623.complete
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACGCAAGCTTTCTAGACCAT
BO06623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 696 | CG11820-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 868 | CG11820-RA | 88..780 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25066001..25066630 | 80..709 | 3150 | 100 | Plus |
3R | 32079331 | 3R | 25065878..25065942 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:59 has no hits.
BO06623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:23 Download gff for
BO06623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-RA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:04 Download gff for
BO06623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-RA | 67..771 | 7..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:55 Download gff for
BO06623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 88..780 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:23 Download gff for
BO06623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-RA | 67..771 | 7..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:29 Download gff for
BO06623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 88..780 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:29 Download gff for
BO06623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25065878..25065941 | 17..80 | 100 | -> | Plus |
3R | 25066002..25066630 | 81..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:55 Download gff for
BO06623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20891600..20891663 | 17..80 | 100 | -> | Plus |
arm_3R | 20891724..20892352 | 81..711 | 99 | | Plus |
BO06623.pep Sequence
Translation from 16 to 727
> BO06623.pep
MSLPAALLQRLKKRGLVTKQSGAAPISEAIEEIIAENYDDDDKSGPYPYK
EDTSPEPKRRSVEEKFWSHRIKERIGVNESYHGYKLCPNKYNIYHKCSLY
CVNKFNSSPLSQPSHRYLKRYKRLLRKYPLEAGWKDVYDKGCKAFYFYNS
TTQTVSWLPPSHPKARITNSAAVFRRQLANSNDEFNFDTNMVQPKSSNQN
EPDEPDVFVPAKKQKSRDLERKIQRRRRNDNASFLDH
BO06623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-PA | 231 | CG11820-PA | 1..231 | 1..231 | 1242 | 100 | Plus |