Clone Sequence Records
BO06629.3prime Sequence
891 bp (787 high quality bases) assembled on 2005-12-03
> BO06629.3prime
ATGGTCTAGAAAGCTTGCGTTTATTTGCCAGAATATCTGAGACTTTTCTC
GGACAGGATCTCCCTTTTGGATGTCTACGCCATTGATGTACATGGGCGTA
AACTCCCGGTAGGCTACACAAACGCGGCGCTCTTGGACATCCTCGCGTAG
TACAGAATGCTCAAACTGGTACCTCGCTGGCCCATACAAAACTATCAAGG
AGAGGTTTGGCATAGGTATGCGCAGCACCTTTCCCTCAAAAGTTGCAAGT
TGGTCATCTGTCAGTAGAGGCGCCAATAGTTCATCTTCGTAGCTGGCAAC
CAAGTCCAAGTTGTACTTGCCCGATTGTTGAACTTCGTAGGGCGTCAAAG
TGAGCACTGAGTCGCCGAGGCAGTTGACAGTGACCACACGCTCGCCCCAG
ATCCAGCAATCGTCCACGTGCGGATCTATGCTGGCTCCTTTGCTGGGCTC
GTACTCCAGGGAGCACTGTTCGATGGTCTGAAAGCCACGAAGCAGGGGAA
CGTCTTCGAAGCGCCGTTGCACATATTCCGTTGTCCTGGGGAATCCGGCA
AAGGATCCCAGCCGCAGTTTGCGCTTTTTAAAGTTGGTCTTGGGTCCGAA
GTTCTGTTTTCGCCTGCCGCTCTGCGAGATGTCCCATGGCAGGTCATCCA
AGTCGGCTATAAGTTGGGCGCCCTCATCAACGCTAAGGAATTCCTCCTGC
ACCAGGATGCCCGGCAGTGGGAGGCCCTCATCTTTTTTGTGATTTTCATG
ATCCTTTTGGACATGATTGGTATCCCAACCGCGCTGCAGAAGGTCGCACT
GGATACAGTAGGACCATGCTTCCAGTTGCTGGAAATGTTCCCGTAGCGAG
GTCTTCGCTATATGAAAGTCCTGTTCGCAGCTCAAGCAGGT
BO06629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PA | 915 | CG4036-RA | 40..912 | 891..19 | 4340 | 99.8 | Minus |
CG18854-PA | 282 | CG18854-RA | 81..272 | 373..182 | 660 | 93.7 | Minus |
CG18854-PC | 363 | CG18854-RC | 162..353 | 373..182 | 660 | 93.7 | Minus |
CG18854-PB | 282 | CG18854-RB | 81..272 | 373..182 | 660 | 93.7 | Minus |
CG18854-PA | 282 | CG18854-RA | 40..68 | 891..863 | 145 | 100 | Minus |
CG18854-PC | 363 | CG18854-RC | 121..149 | 891..863 | 145 | 100 | Minus |
CG18854-PB | 282 | CG18854-RB | 40..68 | 891..863 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 61..933 | 891..19 | 4350 | 99.9 | Minus |
CG4036-RA | 1002 | CG4036-RA | 113..985 | 891..19 | 4350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9791009..9791694 | 891..206 | 3415 | 99.9 | Minus |
2L | 23513712 | 2L | 9791755..9791941 | 205..19 | 935 | 100 | Minus |
2L | 23513712 | 2L | 9789367..9789534 | 206..373 | 705 | 94.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:17:20 has no hits.
BO06629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:05 Download gff for
BO06629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 40..915 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:45 Download gff for
BO06629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 40..915 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:22 Download gff for
BO06629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 113..991 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:24 Download gff for
BO06629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 113..991 | 15..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:24 Download gff for
BO06629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9791009..9791694 | 206..891 | 99 | -> | Minus |
2L | 9791755..9791947 | 15..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:22 Download gff for
BO06629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9791009..9791694 | 206..891 | 99 | -> | Minus |
arm_2L | 9791755..9791947 | 15..205 | 98 | | Minus |
BO06629.5prime Sequence
841 bp (840 high quality bases) assembled on 2005-12-03
> BO06629.5prime
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGG
BO06629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PA | 915 | CG4036-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
CG18854-PA | 282 | CG18854-RA | 81..272 | 574..765 | 660 | 93.7 | Plus |
CG18854-PC | 363 | CG18854-RC | 162..353 | 574..765 | 660 | 93.7 | Plus |
CG18854-PB | 282 | CG18854-RB | 81..272 | 574..765 | 660 | 93.7 | Plus |
CG18854-PA | 282 | CG18854-RA | 18..68 | 34..84 | 205 | 96 | Plus |
CG18854-PC | 363 | CG18854-RC | 99..149 | 34..84 | 205 | 96 | Plus |
CG18854-PB | 282 | CG18854-RB | 18..68 | 34..84 | 205 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 22..846 | 17..841 | 4125 | 100 | Plus |
CG4036-RA | 1002 | CG4036-RA | 74..898 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9790970..9791694 | 17..741 | 3625 | 100 | Plus |
2L | 23513712 | 2L | 9789367..9789534 | 741..574 | 705 | 94.6 | Minus |
2L | 23513712 | 2L | 9791755..9791854 | 742..841 | 500 | 100 | Plus |
2L | 23513712 | 2L | 9789536..9789614 | 95..17 | 275 | 89.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:10:28 has no hits.
BO06629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:06 Download gff for
BO06629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:46 Download gff for
BO06629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:52 Download gff for
BO06629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 69..898 | 8..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:35 Download gff for
BO06629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 69..898 | 8..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:35 Download gff for
BO06629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9790969..9791694 | 14..741 | 99 | -> | Plus |
2L | 9791755..9791854 | 742..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:52 Download gff for
BO06629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9790969..9791694 | 14..741 | 99 | -> | Plus |
arm_2L | 9791755..9791854 | 742..841 | 100 | | Plus |
BO06629.complete Sequence
946 bp (946 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630468
> BO06629.complete
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACG
CCCATGTACATCAATGGCGTAGACATCCAAAAGGGAGATCCTGTCCGAGA
AAAGTCTCAGATATTCTGGCAAATAAACGCAAGCTTTCTAGACCAT
BO06629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 915 | CG4036-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
CG4036-RA | 915 | CG4036-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 22..933 | 17..928 | 4560 | 100 | Plus |
CG4036-RA | 1002 | CG4036-RA | 74..985 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9790970..9791694 | 17..741 | 3625 | 100 | Plus |
2L | 23513712 | 2L | 9791755..9791941 | 742..928 | 935 | 100 | Plus |
2L | 23513712 | 2L | 9789367..9789534 | 741..574 | 705 | 94.6 | Minus |
2L | 23513712 | 2L | 9789536..9789614 | 95..17 | 275 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:46 has no hits.
BO06629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:05 Download gff for
BO06629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:38 Download gff for
BO06629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 14..936 | 8..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:56 Download gff for
BO06629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 74..985 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:06 Download gff for
BO06629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 14..936 | 8..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:35 Download gff for
BO06629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 74..985 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:35 Download gff for
BO06629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9790970..9791694 | 17..741 | 100 | -> | Plus |
2L | 9791755..9791941 | 742..930 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:56 Download gff for
BO06629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9790970..9791694 | 17..741 | 100 | -> | Plus |
arm_2L | 9791755..9791941 | 742..930 | 98 | | Plus |
BO06629.pep Sequence
Translation from 16 to 946
> BO06629.pep
MNTIRPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQR
GWDTNHVQKDHENHKKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLPWD
ISQSGRRKQNFGPKTNFKKRKLRLGSFAGFPRTTEYVQRRFEDVPLLRGF
QTIEQCSLEYEPSKGASIDPHVDDCWIWGERVVTVNCLGDSVLTLTPYEV
QQSGKYNLDLVASYEDELLAPLLTDDQLATFEGKVLRIPMPNLSLIVLYG
PARYQFEHSVLREDVQERRVCVAYREFTPMYINGVDIQKGDPVREKSQIF
WQINASFLDH
BO06629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PB | 304 | CG4036-PB | 1..304 | 1..304 | 1635 | 100 | Plus |
CG4036-PA | 304 | CG4036-PA | 1..304 | 1..304 | 1635 | 100 | Plus |