Clone BO06629 Report

Search the DGRC for BO06629

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG4036-RA
Protein status:BO06629.pep: validated full length
Sequenced Size:946

Clone Sequence Records

BO06629.3prime Sequence

891 bp (787 high quality bases) assembled on 2005-12-03

> BO06629.3prime
ATGGTCTAGAAAGCTTGCGTTTATTTGCCAGAATATCTGAGACTTTTCTC
GGACAGGATCTCCCTTTTGGATGTCTACGCCATTGATGTACATGGGCGTA
AACTCCCGGTAGGCTACACAAACGCGGCGCTCTTGGACATCCTCGCGTAG
TACAGAATGCTCAAACTGGTACCTCGCTGGCCCATACAAAACTATCAAGG
AGAGGTTTGGCATAGGTATGCGCAGCACCTTTCCCTCAAAAGTTGCAAGT
TGGTCATCTGTCAGTAGAGGCGCCAATAGTTCATCTTCGTAGCTGGCAAC
CAAGTCCAAGTTGTACTTGCCCGATTGTTGAACTTCGTAGGGCGTCAAAG
TGAGCACTGAGTCGCCGAGGCAGTTGACAGTGACCACACGCTCGCCCCAG
ATCCAGCAATCGTCCACGTGCGGATCTATGCTGGCTCCTTTGCTGGGCTC
GTACTCCAGGGAGCACTGTTCGATGGTCTGAAAGCCACGAAGCAGGGGAA
CGTCTTCGAAGCGCCGTTGCACATATTCCGTTGTCCTGGGGAATCCGGCA
AAGGATCCCAGCCGCAGTTTGCGCTTTTTAAAGTTGGTCTTGGGTCCGAA
GTTCTGTTTTCGCCTGCCGCTCTGCGAGATGTCCCATGGCAGGTCATCCA
AGTCGGCTATAAGTTGGGCGCCCTCATCAACGCTAAGGAATTCCTCCTGC
ACCAGGATGCCCGGCAGTGGGAGGCCCTCATCTTTTTTGTGATTTTCATG
ATCCTTTTGGACATGATTGGTATCCCAACCGCGCTGCAGAAGGTCGCACT
GGATACAGTAGGACCATGCTTCCAGTTGCTGGAAATGTTCCCGTAGCGAG
GTCTTCGCTATATGAAAGTCCTGTTCGCAGCTCAAGCAGGT

BO06629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PA 915 CG4036-RA 40..912 891..19 4340 99.8 Minus
CG18854-PA 282 CG18854-RA 81..272 373..182 660 93.7 Minus
CG18854-PC 363 CG18854-RC 162..353 373..182 660 93.7 Minus
CG18854-PB 282 CG18854-RB 81..272 373..182 660 93.7 Minus
CG18854-PA 282 CG18854-RA 40..68 891..863 145 100 Minus
CG18854-PC 363 CG18854-RC 121..149 891..863 145 100 Minus
CG18854-PB 282 CG18854-RB 40..68 891..863 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 61..933 891..19 4350 99.9 Minus
CG4036-RA 1002 CG4036-RA 113..985 891..19 4350 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9791009..9791694 891..206 3415 99.9 Minus
2L 23513712 2L 9791755..9791941 205..19 935 100 Minus
2L 23513712 2L 9789367..9789534 206..373 705 94.6 Plus
Blast to na_te.dros performed on 2015-02-09 19:17:20 has no hits.

BO06629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:05 Download gff for BO06629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 40..915 18..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:45 Download gff for BO06629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 40..915 18..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:22 Download gff for BO06629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 113..991 15..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:24 Download gff for BO06629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 113..991 15..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:24 Download gff for BO06629.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9791009..9791694 206..891 99 -> Minus
2L 9791755..9791947 15..205 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:22 Download gff for BO06629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9791009..9791694 206..891 99 -> Minus
arm_2L 9791755..9791947 15..205 98   Minus

BO06629.5prime Sequence

841 bp (840 high quality bases) assembled on 2005-12-03

> BO06629.5prime
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGG

BO06629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PA 915 CG4036-RA 1..825 17..841 4125 100 Plus
CG18854-PA 282 CG18854-RA 81..272 574..765 660 93.7 Plus
CG18854-PC 363 CG18854-RC 162..353 574..765 660 93.7 Plus
CG18854-PB 282 CG18854-RB 81..272 574..765 660 93.7 Plus
CG18854-PA 282 CG18854-RA 18..68 34..84 205 96 Plus
CG18854-PC 363 CG18854-RC 99..149 34..84 205 96 Plus
CG18854-PB 282 CG18854-RB 18..68 34..84 205 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 22..846 17..841 4125 100 Plus
CG4036-RA 1002 CG4036-RA 74..898 17..841 4125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9790970..9791694 17..741 3625 100 Plus
2L 23513712 2L 9789367..9789534 741..574 705 94.6 Minus
2L 23513712 2L 9791755..9791854 742..841 500 100 Plus
2L 23513712 2L 9789536..9789614 95..17 275 89.9 Minus
Blast to na_te.dros performed on 2015-02-11 23:10:28 has no hits.

BO06629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:06 Download gff for BO06629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:46 Download gff for BO06629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:52 Download gff for BO06629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 69..898 8..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:35 Download gff for BO06629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 69..898 8..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:35 Download gff for BO06629.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9790969..9791694 14..741 99 -> Plus
2L 9791755..9791854 742..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:52 Download gff for BO06629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9790969..9791694 14..741 99 -> Plus
arm_2L 9791755..9791854 742..841 100   Plus

BO06629.complete Sequence

946 bp (946 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630468

> BO06629.complete
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACG
CCCATGTACATCAATGGCGTAGACATCCAAAAGGGAGATCCTGTCCGAGA
AAAGTCTCAGATATTCTGGCAAATAAACGCAAGCTTTCTAGACCAT

BO06629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 915 CG4036-PB 1..912 17..928 4560 100 Plus
CG4036-RA 915 CG4036-PA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 22..933 17..928 4560 100 Plus
CG4036-RA 1002 CG4036-RA 74..985 17..928 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9790970..9791694 17..741 3625 100 Plus
2L 23513712 2L 9791755..9791941 742..928 935 100 Plus
2L 23513712 2L 9789367..9789534 741..574 705 94.6 Minus
2L 23513712 2L 9789536..9789614 95..17 275 89.9 Minus
Blast to na_te.dros performed on 2014-11-27 14:06:46 has no hits.

BO06629.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:05 Download gff for BO06629.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..915 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:38 Download gff for BO06629.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 14..936 8..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:56 Download gff for BO06629.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 74..985 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:06 Download gff for BO06629.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 14..936 8..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:35 Download gff for BO06629.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 74..985 17..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:35 Download gff for BO06629.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9790970..9791694 17..741 100 -> Plus
2L 9791755..9791941 742..930 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:56 Download gff for BO06629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9790970..9791694 17..741 100 -> Plus
arm_2L 9791755..9791941 742..930 98   Plus

BO06629.pep Sequence

Translation from 16 to 946

> BO06629.pep
MNTIRPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQR
GWDTNHVQKDHENHKKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLPWD
ISQSGRRKQNFGPKTNFKKRKLRLGSFAGFPRTTEYVQRRFEDVPLLRGF
QTIEQCSLEYEPSKGASIDPHVDDCWIWGERVVTVNCLGDSVLTLTPYEV
QQSGKYNLDLVASYEDELLAPLLTDDQLATFEGKVLRIPMPNLSLIVLYG
PARYQFEHSVLREDVQERRVCVAYREFTPMYINGVDIQKGDPVREKSQIF
WQINASFLDH

BO06629.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PB 304 CG4036-PB 1..304 1..304 1635 100 Plus
CG4036-PA 304 CG4036-PA 1..304 1..304 1635 100 Plus