Clone Sequence Records
BO06631.3prime Sequence
653 bp (652 high quality bases) assembled on 2005-12-03
> BO06631.3prime
ATGGTCTAGAAAGCTTGCCGAGTACAAGTCGAAGTACATGAAGACCGTGA
CCAGAAATCCGCAGAACAGGGCGCACAAGTAGCCCAAGTGCATCGAGGCA
GTCTTCTCCTCGCGGAAACGTTTCTTGGAACGCGGCGTAAAGGGCGAGGG
GGGATTTACGCCGGGCACCGCGCTGTCCAAGTACACGATTCCGTACGCGA
AAGCTGCCACTAGAAGGCCACACAGCAGGGGACTCAGCCTGGAGCCCAGC
TGGTGCCTGGTGGCCCACACCAAGGTCTCGTTCCACCTACTCTGCACCTG
GTGGCTCAGCACCTGGATGGAATCGCCCGTGATGTATGGCATCGTTAAGA
TGACGCTTTTGTAGCCAATGATAAGAGTCCCAAAGAGAAGGGCCACCTTT
TTGATCAGCGGATCGAGGGCGGTCACCACTCCCACTCGCCCCTTTTCCGA
GGGTTTAGCAACACCTACGTAGTGCTCAAGTTTCGGATGCGAGGTCTTCG
GCGTGGAGGTGTAGATCCGTCCGTTCGGTTGCCCGTTTTTTTTACTTCTG
ACTGCCGTTGAGAAAATCCCATTGGTTTTGTTTTTCTCCTGCTGGCGATG
CGTGACGTCACAGCCGACTTCGGCTGGTTCCACCTGCATGTCGACTGATA
ACT
BO06631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-PA | 624 | CG8321-RA | 1..621 | 639..19 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 1195 | CG8321-RA | 186..810 | 643..19 | 3110 | 99.8 | Minus |
CG8321-RB | 930 | CG8321-RB | 1..545 | 563..19 | 2725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12034131..12034432 | 643..342 | 1495 | 99.7 | Minus |
2R | 25286936 | 2R | 12035488..12035710 | 341..119 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12035775..12035875 | 119..19 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:15:11 has no hits.
BO06631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:08 Download gff for
BO06631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 18..639 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:49 Download gff for
BO06631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 18..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:24 Download gff for
BO06631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..810 | 19..647 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:18 Download gff for
BO06631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..810 | 19..647 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:18 Download gff for
BO06631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12034129..12034432 | 342..647 | 99 | -> | Minus |
2R | 12035488..12035710 | 119..341 | 100 | -> | Minus |
2R | 12035776..12035875 | 19..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:24 Download gff for
BO06631.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7921634..7921937 | 342..647 | 99 | -> | Minus |
arm_2R | 7922993..7923215 | 119..341 | 100 | -> | Minus |
arm_2R | 7923281..7923380 | 19..118 | 100 | | Minus |
BO06631.5prime Sequence
653 bp (652 high quality bases) assembled on 2005-12-03
> BO06631.5prime
GAAGTTATCAGTCGACATGCAGGTGGAACCAGCCGAAGTCGGCTGTGACG
TCACGCATCGCCAGCAGGAGAAAAACAAAACCAATGGGATTTTCTCAACG
GCAGTCAGAAGTAAAAAAAACGGGCAACCGAACGGACGGATCTACACCTC
CACGCCGAAGACCTCGCATCCGAAACTTGAGCACTACGTAGGTGTTGCTA
AACCCTCGGAAAAGGGGCGAGTGGGAGTGGTGACCGCCCTCGATCCGCTG
ATCAAAAAGGTGGCCCTTCTCTTTGGGACTCTTATCATTGGCTACAAAAG
CGTCATCTTAACGATGCCATACATCACGGGCGATTCCATCCAGGTGCTGA
GCCACCAGGTGCAGAGTAGGTGGAACGAGACCTTGGTGTGGGCCACCAGG
CACCAGCTGGGCTCCAGGCTGAGTCCCCTGCTGTGTGGCCTTCTAGTGGC
AGCTTTCGCGTACGGAATCGTGTACTTGGACAGCGCGGTGCCCGGCGTAA
ATCCCCCCTCGCCCTTTACGCCGCGTTCCAAGAAACGTTTCCGCGAGGAG
AAGACTGCCTCGATGCACTTGGGCTACTTGTGCGCCCTGTTCTGCGGATT
TCTGGTCACGGTCTTCATGTACTTCGACTTGTACTCGGCAAGCTTTCTAG
ACC
BO06631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-PA | 624 | CG8321-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 1195 | CG8321-RA | 186..810 | 13..637 | 3110 | 99.8 | Plus |
CG8321-RB | 930 | CG8321-RB | 1..545 | 93..637 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12034131..12034432 | 13..314 | 1495 | 99.7 | Plus |
2R | 25286936 | 2R | 12035488..12035710 | 315..537 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 12035775..12035875 | 537..637 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:05:42 has no hits.
BO06631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:09 Download gff for
BO06631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:51 Download gff for
BO06631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:22 Download gff for
BO06631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..810 | 9..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:02 Download gff for
BO06631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..810 | 9..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:02 Download gff for
BO06631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12035776..12035875 | 538..637 | 100 | | Plus |
2R | 12034129..12034432 | 9..314 | 99 | -> | Plus |
2R | 12035488..12035710 | 315..537 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:22 Download gff for
BO06631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7922993..7923215 | 315..537 | 100 | -> | Plus |
arm_2R | 7921634..7921937 | 9..314 | 99 | -> | Plus |
arm_2R | 7923281..7923380 | 538..637 | 100 | | Plus |
BO06631.complete Sequence
655 bp (655 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630469
> BO06631.complete
GAAGTTATCAGTCGACATGCAGGTGGAACCAGCCGAAGTCGGCTGTGACG
TCACGCATCGCCAGCAGGAGAAAAACAAAACCAATGGGATTTTCTCAACG
GCAGTCAGAAGTAAAAAAAACGGGCAACCGAACGGACGGATCTACACCTC
CACGCCGAAGACCTCGCATCCGAAACTTGAGCACTACGTAGGTGTTGCTA
AACCCTCGGAAAAGGGGCGAGTGGGAGTGGTGACCGCCCTCGATCCGCTG
ATCAAAAAGGTGGCCCTTCTCTTTGGGACTCTTATCATTGGCTACAAAAG
CGTCATCTTAACGATGCCATACATCACGGGCGATTCCATCCAGGTGCTGA
GCCACCAGGTGCAGAGTAGGTGGAACGAGACCTTGGTGTGGGCCACCAGG
CACCAGCTGGGCTCCAGGCTGAGTCCCCTGCTGTGTGGCCTTCTAGTGGC
AGCTTTCGCGTACGGAATCGTGTACTTGGACAGCGCGGTGCCCGGCGTAA
ATCCCCCCTCGCCCTTTACGCCGCGTTCCAAGAAACGTTTCCGCGAGGAG
AAGACTGCCTCGATGCACTTGGGCTACTTGTGCGCCCTGTTCTGCGGATT
TCTGGTCACGGTCTTCATGTACTTCGACTTGTACTCGGCAAGCTTTCTAG
ACCAT
BO06631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 624 | CG8321-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
CG8321-RB | 327 | CG8321-PB | 1..324 | 314..637 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 1195 | CG8321-RA | 186..810 | 13..637 | 3110 | 99.8 | Plus |
CG8321-RB | 930 | CG8321-RB | 1..545 | 93..637 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12034131..12034432 | 13..314 | 1495 | 99.7 | Plus |
2R | 25286936 | 2R | 12035488..12035710 | 315..537 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 12035775..12035875 | 537..637 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:53:51 has no hits.
BO06631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:07 Download gff for
BO06631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 1..624 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:41 Download gff for
BO06631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 182..808 | 9..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:40 Download gff for
BO06631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 190..810 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:07 Download gff for
BO06631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 182..808 | 9..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:29 Download gff for
BO06631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 190..810 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:29 Download gff for
BO06631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12034135..12034432 | 17..314 | 100 | -> | Plus |
2R | 12035488..12035710 | 315..537 | 100 | -> | Plus |
2R | 12035776..12035875 | 538..639 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:40 Download gff for
BO06631.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7922993..7923215 | 315..537 | 100 | -> | Plus |
arm_2R | 7921640..7921937 | 17..314 | 100 | -> | Plus |
arm_2R | 7923281..7923380 | 538..639 | 98 | | Plus |
BO06631.pep Sequence
Translation from 16 to 655
> BO06631.pep
MQVEPAEVGCDVTHRQQEKNKTNGIFSTAVRSKKNGQPNGRIYTSTPKTS
HPKLEHYVGVAKPSEKGRVGVVTALDPLIKKVALLFGTLIIGYKSVILTM
PYITGDSIQVLSHQVQSRWNETLVWATRHQLGSRLSPLLCGLLVAAFAYG
IVYLDSAVPGVNPPSPFTPRSKKRFREEKTASMHLGYLCALFCGFLVTVF
MYFDLYSASFLDH
BO06631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-PA | 207 | CG8321-PA | 1..207 | 1..207 | 1083 | 100 | Plus |
CG8321-PB | 108 | CG8321-PB | 1..108 | 100..207 | 575 | 100 | Plus |