Clone Sequence Records
BO06634.3prime Sequence
827 bp (826 high quality bases) assembled on 2005-12-03
> BO06634.3prime
ATGGTCTAGAAAGCTTGCGACTATATTGCCGCCATCGTAGGCGTAGTCGG
CTTTGTTGTGCATGACGAGTCGGTTTCCCACAAAGTAAAAGCTGTCCGAG
CGCGTCTCAAAGGGGCTCGATATCATCTCAGCAACTAGGTCGGGTGGAAG
GTTAGGAAACTCGTAGATGTGCTCAACCGTATTCTTCGAAAATGGAAAGC
AAAAGCCGAACTCAAAGTCAAACGTCTTTAGCAGGCGATCGCGGAAGAAG
TGGCGTTCGATCATACGAAAATTATTAAGCGGCTGGCTGCCCACAGTGAA
TTCCACAGTGGCTCCCACTGTTTTGAGGTTGAGAAATGCCGGTGTGAACT
GATAGCGCACATAGCGTCCGGCATTTGGATCGGCAGTGTCATCCAGTGAC
AATTTCTCGGCAGCCGCCAGCATGGTTTCATCCGAGGACAGTCCTTCCGG
ATATTGTTCACTCGGCGGTTTGGCGATCTCGAAGAGCACAGCGCCGCTCT
CCAGGTCGCGAATCTTGAACCGCGTGAAATCAATCTCGAACACATTTGCA
TTGGCGGAGCAGAGATAGTCGTCCGTGATCTTGGTCAGATGGAGCACCTC
GTCGGGAGTCACGCTGGAAGACTCCGCAGGCCGTTTGGCATCACCGGAGG
CACCAGCGCCCGCTGCTGCAGCTCCCGACGATCCTCCACTGCCGCCGTTG
GCCTCCACTCCACTGTTCGAAGAAGAGGATCCTGCGGCCGCGGAGGAAGA
CGTTGTCACTGCGCCTGCACCGGAGGATTGCACCGGATTTAGTTGCTTAC
CCACCACGCTCATGTCGACTGATAACT
BO06634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1659-PA | 798 | unc-119-RA | 1..795 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 2340 | CG1659-RC | 764..1558 | 813..19 | 3975 | 100 | Minus |
unc-119-RA | 2031 | CG1659-RA | 768..1562 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7289745..7290250 | 308..813 | 2530 | 100 | Plus |
X | 23542271 | X | 7289506..7289678 | 135..307 | 865 | 100 | Plus |
X | 23542271 | X | 7289149..7289267 | 19..137 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:17:29 has no hits.
BO06634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:11 Download gff for
BO06634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:55 Download gff for
BO06634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:06 Download gff for
BO06634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1562 | 19..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:31:27 Download gff for
BO06634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1562 | 19..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:31:27 Download gff for
BO06634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7289149..7289264 | 19..134 | 100 | <- | Plus |
X | 7289506..7289678 | 135..307 | 100 | <- | Plus |
X | 7289745..7290260 | 308..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:06 Download gff for
BO06634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7183539..7183711 | 135..307 | 100 | <- | Plus |
arm_X | 7183182..7183297 | 19..134 | 100 | <- | Plus |
arm_X | 7183778..7184293 | 308..822 | 99 | | Plus |
BO06634.5prime Sequence
827 bp (751 high quality bases) assembled on 2005-12-03
> BO06634.5prime
GAAGTTATCAGTCGACATGAGCGTGGTGGGTAAGCAACTAAATCCGGTGC
AATCCTCCGGTGCAGGCGCAGTGACAACGTCTTCCTCCGCGGCCGCAGGA
TCCTCTTCTTCGAACAGTGGAGTGGAGGCCAACGGCGGCAGTGGAGGATC
GTCGGGAGCTGCAGCAGCGGGCGCTGGTGCCTCCGGTGATGCCAAACGGC
CTGCGGAGTCTTCCAGCGTGACTCCCGACGAGGTGCTCCATCTGACCAAG
ATCACGGACGACTATCTCTGCTCCGCCAATGCAAATGTGTTCGAGATTGA
TTTCACGCGGTTCAAGATTCGCGACCTGGAGAGCGGCGCTGTGCTCTTCG
AGATCGCCAAACCGCCGAGTGAACAATATCCGGAAGGACTGTCCTCGGAT
GAAACCATGCTGGCGGCTGCCGAGAAATTGTCACTGGATGACACTGCCGA
TCCAAATGCCGGACGCTATGTGCGCTATCAGTTCACACCGGCATTTCTCA
ACCTCAAAACAGTGGGAGCCACTGTGGAATTCACTGTGGGCAGCCAGCCG
CTTAATAATTTTCGTATGATCGAACGCCACTTCTTCCGCGATCGCCTGCT
AAAGACGTTTGACTTTGAGTTCGGCTTTTGCTTTCCATTTTCGAAGAATA
CGGTTGAGCACATCTACGAGTTTCCTAACCTTCCACCCGACCTAGTTGCT
GAGATGATATCGAGCCCCTTTGAGACGCGCTCGGACAGCTTTTACTTTGT
GGGAAACCGACTCGTCATGCACAACAAAGCCGACTACGCCTACGATGGCG
GCAATATAGTCGCAAGCTTTCTAGACC
BO06634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1659-PA | 798 | unc-119-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 2340 | CG1659-RC | 764..1558 | 17..811 | 3975 | 100 | Plus |
unc-119-RA | 2031 | CG1659-RA | 768..1562 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7289745..7290250 | 522..17 | 2530 | 100 | Minus |
X | 23542271 | X | 7289506..7289678 | 695..523 | 865 | 100 | Minus |
X | 23542271 | X | 7289149..7289267 | 811..693 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:05:46 has no hits.
BO06634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:13 Download gff for
BO06634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:29:56 Download gff for
BO06634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:23 Download gff for
BO06634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1562 | 8..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:15 Download gff for
BO06634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1562 | 8..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:15 Download gff for
BO06634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7289149..7289264 | 696..811 | 100 | <- | Minus |
X | 7289506..7289678 | 523..695 | 100 | <- | Minus |
X | 7289745..7290260 | 8..522 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:23 Download gff for
BO06634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7183182..7183297 | 696..811 | 100 | <- | Minus |
arm_X | 7183539..7183711 | 523..695 | 100 | <- | Minus |
arm_X | 7183778..7184293 | 8..522 | 99 | | Minus |
BO06634.complete Sequence
829 bp (829 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630471
> BO06634.complete
GAAGTTATCAGTCGACATGAGCGTGGTGGGTAAGCAACTAAATCCGGTGC
AATCCTCCGGTGCAGGCGCAGTGACAACGTCTTCCTCCGCGGCCGCAGGA
TCCTCTTCTTCGAACAGTGGAGTGGAGGCCAACGGCGGCAGTGGAGGATC
GTCGGGAGCTGCAGCAGCGGGCGCTGGTGCCTCCGGTGATGCCAAACGGC
CTGCGGAGTCTTCCAGCGTGACTCCCGACGAGGTGCTCCATCTGACCAAG
ATCACGGACGACTATCTCTGCTCCGCCAATGCAAATGTGTTCGAGATTGA
TTTCACGCGGTTCAAGATTCGCGACCTGGAGAGCGGCGCTGTGCTCTTCG
AGATCGCCAAACCGCCGAGTGAACAATATCCGGAAGGACTGTCCTCGGAT
GAAACCATGCTGGCGGCTGCCGAGAAATTGTCACTGGATGACACTGCCGA
TCCAAATGCCGGACGCTATGTGCGCTATCAGTTCACACCGGCATTTCTCA
ACCTCAAAACAGTGGGAGCCACTGTGGAATTCACTGTGGGCAGCCAGCCG
CTTAATAATTTTCGTATGATCGAACGCCACTTCTTCCGCGATCGCCTGCT
AAAGACGTTTGACTTTGAGTTCGGCTTTTGCTTTCCATTTTCGAAGAATA
CGGTTGAGCACATCTACGAGTTTCCTAACCTTCCACCCGACCTAGTTGCT
GAGATGATATCGAGCCCCTTTGAGACGCGCTCGGACAGCTTTTACTTTGT
GGGAAACCGACTCGTCATGCACAACAAAGCCGACTACGCCTACGATGGCG
GCAATATAGTCGCAAGCTTTCTAGACCAT
BO06634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 798 | CG1659-PC | 1..795 | 17..811 | 3975 | 100 | Plus |
unc-119-RA | 798 | CG1659-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 2340 | CG1659-RC | 764..1558 | 17..811 | 3975 | 100 | Plus |
unc-119-RA | 2031 | CG1659-RA | 768..1562 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7289745..7290250 | 522..17 | 2530 | 100 | Minus |
X | 23542271 | X | 7289506..7289678 | 695..523 | 865 | 100 | Minus |
X | 23542271 | X | 7289149..7289267 | 811..693 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:34:11 has no hits.
BO06634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:09 Download gff for
BO06634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:44 Download gff for
BO06634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 764..1568 | 8..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:43 Download gff for
BO06634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 768..1562 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:09 Download gff for
BO06634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 764..1568 | 8..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:25 Download gff for
BO06634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 768..1562 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:25 Download gff for
BO06634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7289147..7289264 | 696..813 | 98 | <- | Minus |
X | 7289506..7289678 | 523..695 | 100 | <- | Minus |
X | 7289745..7290250 | 17..522 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:43 Download gff for
BO06634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7183180..7183297 | 696..813 | 98 | <- | Minus |
arm_X | 7183539..7183711 | 523..695 | 100 | <- | Minus |
arm_X | 7183778..7184283 | 17..522 | 100 | | Minus |
BO06634.pep Sequence
Translation from 16 to 829
> BO06634.pep
MSVVGKQLNPVQSSGAGAVTTSSSAAAGSSSSNSGVEANGGSGGSSGAAA
AGAGASGDAKRPAESSSVTPDEVLHLTKITDDYLCSANANVFEIDFTRFK
IRDLESGAVLFEIAKPPSEQYPEGLSSDETMLAAAEKLSLDDTADPNAGR
YVRYQFTPAFLNLKTVGATVEFTVGSQPLNNFRMIERHFFRDRLLKTFDF
EFGFCFPFSKNTVEHIYEFPNLPPDLVAEMISSPFETRSDSFYFVGNRLV
MHNKADYAYDGGNIVASFLDH
BO06634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-PC | 265 | CG1659-PC | 1..265 | 1..265 | 1359 | 100 | Plus |
unc-119-PA | 265 | CG1659-PA | 1..265 | 1..265 | 1359 | 100 | Plus |