Clone BO06638 Report

Search the DGRC for BO06638

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG11586-RA
Protein status:BO06638.pep: validated full length
Sequenced Size:616

Clone Sequence Records

BO06638.5prime Sequence

614 bp (613 high quality bases) assembled on 2005-12-03

> BO06638.5prime
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGGC
AAGCTTTCTAGACC

BO06638.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PA 585 CG11586-RA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 760 CG11586-RB 104..686 16..598 2915 100 Plus
CG11586-RA 1115 CG11586-RA 104..686 16..598 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261726..4262206 598..118 2405 100 Minus
3L 28110227 3L 4262264..4262367 119..16 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:46:45 has no hits.

BO06638.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:19 Download gff for BO06638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 17..599 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:03 Download gff for BO06638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:31 Download gff for BO06638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..686 16..598 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:30 Download gff for BO06638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..686 16..598 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:30 Download gff for BO06638.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4261726..4262204 120..598 100 <- Minus
3L 4262264..4262367 16..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:31 Download gff for BO06638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261726..4262204 120..598 100 <- Minus
arm_3L 4262264..4262367 16..119 100   Minus

BO06638.3prime Sequence

614 bp (613 high quality bases) assembled on 2005-12-03

> BO06638.3prime
ATGGTCTAGAAAGCTTGCCGAGTTCTTCTTTGATCCACCGAAGCCGGAGA
AGCCCATGATGGCGGCCATGTCGTCGGGCATGCCGCCGGACTCGAAGTCC
GTGTCCTCGGCCTTGCGCTTCCGCTCTTTTCGCTTCTCCTTGCGGTGTTC
CTTGTAGCGATCCTCCTCCTCCTTGGCCTCCCGCAGGCGGCGCTCGAGCT
CGTAGTCTTTCTGCTTCTCCTCCATCTTCTTCTTGTTCTGCTGGAAGCGC
TCCTTTACCTGGTCGACGGTGCTCCGCTCCACCTTCATGGACATGCCCAG
ATTGCGCTGGTGCTTCTTGCCATTGATGTGGTCCAGAAAGTTGATGGAAT
CCTTGACCACGCAGTCGCAAACGTTGCAGTAATAGCCACCGGATTGCGAG
GTGGGTGTGTTCTTGTTGATGACAACGCTCTTGCCCAGCTTGCTGTCCAG
GTCCACCTTATAGTCGCGTCGCTTGAGGTTCTCCCGCTGTACGGGTTCTT
CTTCCTTGGGTGCCACCTGGTTGAGCAGCCGCTCCGCCGCCAGCTTCTCG
TACTCGTTCTTGTCCCATTTCCTTCGGTGGTCATCAGGTCGCATCGTCAT
GTCGACTGATAACT

BO06638.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PA 585 CG11586-RA 1..582 600..19 2910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 760 CG11586-RB 104..686 601..19 2915 100 Minus
CG11586-RA 1115 CG11586-RA 104..686 601..19 2915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261726..4262206 19..499 2405 100 Plus
3L 28110227 3L 4262264..4262367 498..601 520 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:36:05 has no hits.

BO06638.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:18 Download gff for BO06638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 18..600 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:02 Download gff for BO06638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 18..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:07 Download gff for BO06638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..686 19..601 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:33 Download gff for BO06638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..686 19..601 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:33 Download gff for BO06638.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4261726..4262204 19..497 100 <- Plus
3L 4262264..4262367 498..601 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:07 Download gff for BO06638.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261726..4262204 19..497 100 <- Plus
arm_3L 4262264..4262367 498..601 100   Plus

BO06638.complete Sequence

616 bp (616 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630472

> BO06638.complete
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGGC
AAGCTTTCTAGACCAT

BO06638.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 585 CG11586-PB 1..582 17..598 2910 100 Plus
CG11586-RA 585 CG11586-PA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 760 CG11586-RB 104..686 16..598 2915 100 Plus
CG11586-RA 1115 CG11586-RA 104..686 16..598 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261726..4262206 598..118 2405 100 Minus
3L 28110227 3L 4262264..4262367 119..16 520 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:12:14 has no hits.

BO06638.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:37 Download gff for BO06638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 1..585 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:24 Download gff for BO06638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 95..677 16..598 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:09 Download gff for BO06638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 105..686 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:37 Download gff for BO06638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 95..677 16..598 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:26 Download gff for BO06638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 105..686 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:26 Download gff for BO06638.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261724..4262204 120..600 99 <- Minus
3L 4262264..4262366 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:09 Download gff for BO06638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261724..4262204 120..600 99 <- Minus
arm_3L 4262264..4262366 17..119 100   Minus

BO06638.pep Sequence

Translation from 16 to 616

> BO06638.pep
MTMRPDDHRRKWDKNEYEKLAAERLLNQVAPKEEEPVQRENLKRRDYKVD
LDSKLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRN
LGMSMKVERSTVDQVKERFQQNKKKMEEKQKDYELERRLREAKEEEDRYK
EHRKEKRKERKRKAEDTDFESGGMPDDMAAIMGFSGFGGSKKNSASFLDH

BO06638.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PB 194 CG11586-PB 1..194 1..194 1022 100 Plus
CG11586-PA 194 CG11586-PA 1..194 1..194 1022 100 Plus