Clone Sequence Records
BO06638.5prime Sequence
614 bp (613 high quality bases) assembled on 2005-12-03
> BO06638.5prime
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGGC
AAGCTTTCTAGACC
BO06638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-PA | 585 | CG11586-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 760 | CG11586-RB | 104..686 | 16..598 | 2915 | 100 | Plus |
CG11586-RA | 1115 | CG11586-RA | 104..686 | 16..598 | 2915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4261726..4262206 | 598..118 | 2405 | 100 | Minus |
3L | 28110227 | 3L | 4262264..4262367 | 119..16 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:46:45 has no hits.
BO06638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:19 Download gff for
BO06638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:03 Download gff for
BO06638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:31 Download gff for
BO06638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..686 | 16..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:30 Download gff for
BO06638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..686 | 16..598 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:30 Download gff for
BO06638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4261726..4262204 | 120..598 | 100 | <- | Minus |
3L | 4262264..4262367 | 16..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:31 Download gff for
BO06638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4261726..4262204 | 120..598 | 100 | <- | Minus |
arm_3L | 4262264..4262367 | 16..119 | 100 | | Minus |
BO06638.3prime Sequence
614 bp (613 high quality bases) assembled on 2005-12-03
> BO06638.3prime
ATGGTCTAGAAAGCTTGCCGAGTTCTTCTTTGATCCACCGAAGCCGGAGA
AGCCCATGATGGCGGCCATGTCGTCGGGCATGCCGCCGGACTCGAAGTCC
GTGTCCTCGGCCTTGCGCTTCCGCTCTTTTCGCTTCTCCTTGCGGTGTTC
CTTGTAGCGATCCTCCTCCTCCTTGGCCTCCCGCAGGCGGCGCTCGAGCT
CGTAGTCTTTCTGCTTCTCCTCCATCTTCTTCTTGTTCTGCTGGAAGCGC
TCCTTTACCTGGTCGACGGTGCTCCGCTCCACCTTCATGGACATGCCCAG
ATTGCGCTGGTGCTTCTTGCCATTGATGTGGTCCAGAAAGTTGATGGAAT
CCTTGACCACGCAGTCGCAAACGTTGCAGTAATAGCCACCGGATTGCGAG
GTGGGTGTGTTCTTGTTGATGACAACGCTCTTGCCCAGCTTGCTGTCCAG
GTCCACCTTATAGTCGCGTCGCTTGAGGTTCTCCCGCTGTACGGGTTCTT
CTTCCTTGGGTGCCACCTGGTTGAGCAGCCGCTCCGCCGCCAGCTTCTCG
TACTCGTTCTTGTCCCATTTCCTTCGGTGGTCATCAGGTCGCATCGTCAT
GTCGACTGATAACT
BO06638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-PA | 585 | CG11586-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 760 | CG11586-RB | 104..686 | 601..19 | 2915 | 100 | Minus |
CG11586-RA | 1115 | CG11586-RA | 104..686 | 601..19 | 2915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4261726..4262206 | 19..499 | 2405 | 100 | Plus |
3L | 28110227 | 3L | 4262264..4262367 | 498..601 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:36:05 has no hits.
BO06638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:18 Download gff for
BO06638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 18..600 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:02 Download gff for
BO06638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 18..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:07 Download gff for
BO06638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..686 | 19..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:33 Download gff for
BO06638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..686 | 19..601 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:33 Download gff for
BO06638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4261726..4262204 | 19..497 | 100 | <- | Plus |
3L | 4262264..4262367 | 498..601 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:07 Download gff for
BO06638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4261726..4262204 | 19..497 | 100 | <- | Plus |
arm_3L | 4262264..4262367 | 498..601 | 100 | | Plus |
BO06638.complete Sequence
616 bp (616 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630472
> BO06638.complete
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGGC
AAGCTTTCTAGACCAT
BO06638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 585 | CG11586-PB | 1..582 | 17..598 | 2910 | 100 | Plus |
CG11586-RA | 585 | CG11586-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 760 | CG11586-RB | 104..686 | 16..598 | 2915 | 100 | Plus |
CG11586-RA | 1115 | CG11586-RA | 104..686 | 16..598 | 2915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4261726..4262206 | 598..118 | 2405 | 100 | Minus |
3L | 28110227 | 3L | 4262264..4262367 | 119..16 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:12:14 has no hits.
BO06638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:37 Download gff for
BO06638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 1..585 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:24 Download gff for
BO06638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 95..677 | 16..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:09 Download gff for
BO06638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 105..686 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:37 Download gff for
BO06638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 95..677 | 16..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:26 Download gff for
BO06638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 105..686 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:26 Download gff for
BO06638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4261724..4262204 | 120..600 | 99 | <- | Minus |
3L | 4262264..4262366 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:09 Download gff for
BO06638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4261724..4262204 | 120..600 | 99 | <- | Minus |
arm_3L | 4262264..4262366 | 17..119 | 100 | | Minus |
BO06638.pep Sequence
Translation from 16 to 616
> BO06638.pep
MTMRPDDHRRKWDKNEYEKLAAERLLNQVAPKEEEPVQRENLKRRDYKVD
LDSKLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRN
LGMSMKVERSTVDQVKERFQQNKKKMEEKQKDYELERRLREAKEEEDRYK
EHRKEKRKERKRKAEDTDFESGGMPDDMAAIMGFSGFGGSKKNSASFLDH
BO06638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-PB | 194 | CG11586-PB | 1..194 | 1..194 | 1022 | 100 | Plus |
CG11586-PA | 194 | CG11586-PA | 1..194 | 1..194 | 1022 | 100 | Plus |