Clone BO06639 Report

Search the DGRC for BO06639

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptRcp-RA
Protein status:BO06639.pep: validated not full length
Sequenced Size:700

Clone Sequence Records

BO06639.5prime Sequence

698 bp (697 high quality bases) assembled on 2005-12-03

> BO06639.5prime
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGGCAAGCTTTCTAGACC

BO06639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4875-PA 669 CG4875-RA 1..666 17..682 3330 100 Plus
CG4875-PB 717 CG4875-RB 49..714 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 1138 CG4875-RC 69..734 17..682 3330 100 Plus
Rcp-RB 1080 CG4875-RB 69..734 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885075..16885513 244..682 2195 100 Plus
X 23542271 X 16884862..16885016 90..244 775 100 Plus
X 23542271 X 16884726..16884801 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:36:19 has no hits.

BO06639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:21 Download gff for BO06639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 46..717 11..683 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:06 Download gff for BO06639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 46..717 11..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:10 Download gff for BO06639.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 66..738 11..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:59 Download gff for BO06639.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 66..738 11..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:59 Download gff for BO06639.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16884723..16884800 11..91 96 -> Plus
X 16884864..16885016 92..244 100 -> Plus
X 16885076..16885517 245..688 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:10 Download gff for BO06639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778756..16778833 11..91 96 -> Plus
arm_X 16778897..16779049 92..244 100 -> Plus
arm_X 16779109..16779550 245..688 99   Plus

BO06639.3prime Sequence

435 bp (423 high quality bases) assembled on 2005-12-03

> BO06639.3prime
ATGGTCTAGAAAGCTTGCCCCGAGGTTTTCTCCATCTGGTGTCGGATTGG
ACTTGGTTTCCATTGAAGTGGGTGCATCCGTTGCAGGCGCTGTAGTGGCT
TCATTTGCTGGAGTAGCATTATTTTCTGAAGACGATGTTTCCACTGGGCT
TGCTTCTTCTGCTGGAGTAGTAGTAGTGGCTTCACTTGAAGGAGTAGCGA
CATTCGCAGGAGTAACTCCATCACCTGGCGTGGTTTTGTCCGCTGGAGCT
ATTTGTTCCGCTGGATTGGATTTTGCCTGGGCATTACGCTTTACGCCAGA
TTGCTTGCCGGCCTTCGCAGTGGACTCCGCAGGCTTTTCCGCCGGTGTTT
CCTTAGCAGCGCCTTTGGTTTCTCCACCATGGAAGTGTTTGTAGCTCAGC
TGAATGATTTTCTCGTTCTCCTCATCGGGTAGTGG

BO06639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4875-PA 669 CG4875-RA 250..666 435..19 2060 99.7 Minus
CG4875-PB 717 CG4875-RB 298..714 435..19 2060 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 1138 CG4875-RC 318..734 435..19 2070 99.8 Minus
Rcp-RB 1080 CG4875-RB 318..734 435..19 2070 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885097..16885513 435..19 2070 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 23:12:00 has no hits.

BO06639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:20 Download gff for BO06639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 298..717 18..435 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:04 Download gff for BO06639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4875-PB 298..717 18..435 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:57 Download gff for BO06639.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 318..738 13..435 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:51 Download gff for BO06639.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 318..738 13..435 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:51 Download gff for BO06639.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16885097..16885517 13..435 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:57 Download gff for BO06639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16779130..16779550 13..435 99   Minus

BO06639.complete Sequence

700 bp (700 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630473

> BO06639.complete
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGGCAAGCTTTCTAGACCAT

BO06639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 717 CG4875-PC 49..714 17..682 3330 100 Plus
Rcp-RB 717 CG4875-PB 49..714 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RC 1138 CG4875-RC 69..734 17..682 3330 100 Plus
Rcp-RB 1080 CG4875-RB 69..734 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885075..16885513 244..682 2195 100 Plus
X 23542271 X 16884862..16885016 90..244 775 100 Plus
X 23542271 X 16884726..16884801 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:29:54 has no hits.

BO06639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:10 Download gff for BO06639.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 46..717 11..683 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:46 Download gff for BO06639.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 64..736 11..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:50 Download gff for BO06639.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 69..734 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:10 Download gff for BO06639.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 64..736 11..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:49 Download gff for BO06639.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 69..734 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:49 Download gff for BO06639.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884726..16884800 17..91 100 -> Plus
X 16884864..16885016 92..244 100 -> Plus
X 16885076..16885513 245..684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:50 Download gff for BO06639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778759..16778833 17..91 100 -> Plus
arm_X 16778897..16779049 92..244 100 -> Plus
arm_X 16779109..16779546 245..684 99   Plus

BO06639.pep Sequence

Translation from 16 to 700

> BO06639.pep
MQILQKIKSTKKKFGMRNLATVTYEALQYLEESPCKTQTRENIMNYVKDL
SSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH
FHGGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADK
TTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSENNATPANEATTAP
ATDAPTSMETKSNPTPDGENLGASFLDH

BO06639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-PC 238 CG4875-PC 17..238 1..222 1132 100 Plus
Rcp-PB 238 CG4875-PB 17..238 1..222 1132 100 Plus