Clone Sequence Records
BO06639.5prime Sequence
698 bp (697 high quality bases) assembled on 2005-12-03
> BO06639.5prime
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGGCAAGCTTTCTAGACC
BO06639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4875-PA | 669 | CG4875-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
CG4875-PB | 717 | CG4875-RB | 49..714 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 1138 | CG4875-RC | 69..734 | 17..682 | 3330 | 100 | Plus |
Rcp-RB | 1080 | CG4875-RB | 69..734 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885075..16885513 | 244..682 | 2195 | 100 | Plus |
X | 23542271 | X | 16884862..16885016 | 90..244 | 775 | 100 | Plus |
X | 23542271 | X | 16884726..16884801 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:36:19 has no hits.
BO06639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:21 Download gff for
BO06639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 46..717 | 11..683 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:06 Download gff for
BO06639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 46..717 | 11..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:10 Download gff for
BO06639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 66..738 | 11..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:59 Download gff for
BO06639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 66..738 | 11..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:59 Download gff for
BO06639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16884723..16884800 | 11..91 | 96 | -> | Plus |
X | 16884864..16885016 | 92..244 | 100 | -> | Plus |
X | 16885076..16885517 | 245..688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:10 Download gff for
BO06639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16778756..16778833 | 11..91 | 96 | -> | Plus |
arm_X | 16778897..16779049 | 92..244 | 100 | -> | Plus |
arm_X | 16779109..16779550 | 245..688 | 99 | | Plus |
BO06639.3prime Sequence
435 bp (423 high quality bases) assembled on 2005-12-03
> BO06639.3prime
ATGGTCTAGAAAGCTTGCCCCGAGGTTTTCTCCATCTGGTGTCGGATTGG
ACTTGGTTTCCATTGAAGTGGGTGCATCCGTTGCAGGCGCTGTAGTGGCT
TCATTTGCTGGAGTAGCATTATTTTCTGAAGACGATGTTTCCACTGGGCT
TGCTTCTTCTGCTGGAGTAGTAGTAGTGGCTTCACTTGAAGGAGTAGCGA
CATTCGCAGGAGTAACTCCATCACCTGGCGTGGTTTTGTCCGCTGGAGCT
ATTTGTTCCGCTGGATTGGATTTTGCCTGGGCATTACGCTTTACGCCAGA
TTGCTTGCCGGCCTTCGCAGTGGACTCCGCAGGCTTTTCCGCCGGTGTTT
CCTTAGCAGCGCCTTTGGTTTCTCCACCATGGAAGTGTTTGTAGCTCAGC
TGAATGATTTTCTCGTTCTCCTCATCGGGTAGTGG
BO06639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4875-PA | 669 | CG4875-RA | 250..666 | 435..19 | 2060 | 99.7 | Minus |
CG4875-PB | 717 | CG4875-RB | 298..714 | 435..19 | 2060 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 1138 | CG4875-RC | 318..734 | 435..19 | 2070 | 99.8 | Minus |
Rcp-RB | 1080 | CG4875-RB | 318..734 | 435..19 | 2070 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885097..16885513 | 435..19 | 2070 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:12:00 has no hits.
BO06639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:20 Download gff for
BO06639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 298..717 | 18..435 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:04 Download gff for
BO06639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-PB | 298..717 | 18..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:57 Download gff for
BO06639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 318..738 | 13..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:51 Download gff for
BO06639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 318..738 | 13..435 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:51 Download gff for
BO06639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16885097..16885517 | 13..435 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:57 Download gff for
BO06639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16779130..16779550 | 13..435 | 99 | | Minus |
BO06639.complete Sequence
700 bp (700 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630473
> BO06639.complete
GAAGTTATCAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGGCAAGCTTTCTAGACCAT
BO06639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 717 | CG4875-PC | 49..714 | 17..682 | 3330 | 100 | Plus |
Rcp-RB | 717 | CG4875-PB | 49..714 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-RC | 1138 | CG4875-RC | 69..734 | 17..682 | 3330 | 100 | Plus |
Rcp-RB | 1080 | CG4875-RB | 69..734 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885075..16885513 | 244..682 | 2195 | 100 | Plus |
X | 23542271 | X | 16884862..16885016 | 90..244 | 775 | 100 | Plus |
X | 23542271 | X | 16884726..16884801 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:29:54 has no hits.
BO06639.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:10 Download gff for
BO06639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-RB | 46..717 | 11..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:46 Download gff for
BO06639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-RB | 64..736 | 11..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:50 Download gff for
BO06639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 69..734 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:10 Download gff for
BO06639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4875-RB | 64..736 | 11..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:49 Download gff for
BO06639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcp-RB | 69..734 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:49 Download gff for
BO06639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16884726..16884800 | 17..91 | 100 | -> | Plus |
X | 16884864..16885016 | 92..244 | 100 | -> | Plus |
X | 16885076..16885513 | 245..684 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:50 Download gff for
BO06639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16778759..16778833 | 17..91 | 100 | -> | Plus |
arm_X | 16778897..16779049 | 92..244 | 100 | -> | Plus |
arm_X | 16779109..16779546 | 245..684 | 99 | | Plus |
BO06639.pep Sequence
Translation from 16 to 700
> BO06639.pep
MQILQKIKSTKKKFGMRNLATVTYEALQYLEESPCKTQTRENIMNYVKDL
SSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKH
FHGGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADK
TTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSENNATPANEATTAP
ATDAPTSMETKSNPTPDGENLGASFLDH
BO06639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcp-PC | 238 | CG4875-PC | 17..238 | 1..222 | 1132 | 100 | Plus |
Rcp-PB | 238 | CG4875-PB | 17..238 | 1..222 | 1132 | 100 | Plus |