Clone Sequence Records
BO06642.3prime Sequence
602 bp (601 high quality bases) assembled on 2005-12-03
> BO06642.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCAATGTTGTTGGCCAGCGAGCAGC
TGAGTCCGGTGCCATCGGGCTCGACATTCAGCTCGGTCACCTTGCCGTTC
TCCACCACCAGCGAGTAGCGCTTTGAGCGCACGCCGCCAAGTGGTGGCAG
ATCGATGGTCACATCCAGGGCCTTGGTGAAACCGCCGGCGGGATCAGCTA
GGAGGCGCACCTTGCCCGCGGCTCCGTGCTCCTTGCCCCAGGCGGACATC
ACAAAGGGATCGTTGACCGAAACGCAGACAATCTCGTCCACGCCCTGCTT
GGACTTCAGCTCATCGGCGGAGCTCACATAGCCGGGCAAGTGGGTCTTTG
AGCAGCCTGGAGTGAAGGCGCCGGGAACGCCGAAGATGATCACCTTCTTG
CCATTGACGAGATCGCCGGTGTTGATTTTGTTGGCTGGCGAGTCCTCGAA
CAGATCCACCGATGGCAGGGAGTCTCCTACTTTCACCATAGCTGCACTGG
TTTTGGACAGGGATCGCAGTGAAATGATTTGTTGGGGCAGCGCGGAGTTA
ACAACTCGGCCAAGAAATTTGCACGACAGCACACGCATGTCGACTGATAA
CT
BO06642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7217-PA | 573 | CG7217-RA | 1..570 | 588..19 | 2850 | 100 | Minus |
CG7217-PB | 573 | CG7217-RB | 1..570 | 588..19 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7215-RA | 1449 | CG7215-RA | 753..1322 | 588..19 | 2850 | 100 | Minus |
Prx5-RB | 733 | CG7217-RB | 37..606 | 588..19 | 2850 | 100 | Minus |
Prx5-RA | 1449 | CG7217-RA | 753..1322 | 588..19 | 2850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18165569..18165897 | 19..347 | 1645 | 100 | Plus |
3R | 32079331 | 3R | 18166026..18166160 | 346..480 | 675 | 100 | Plus |
3R | 32079331 | 3R | 18166352..18166462 | 478..588 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:36:21 has no hits.
BO06642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:25 Download gff for
BO06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:12 Download gff for
BO06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:02 Download gff for
BO06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 746..1325 | 15..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:45 Download gff for
BO06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5-RA | 746..1325 | 15..595 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:45 Download gff for
BO06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18165565..18165895 | 15..345 | 99 | <- | Plus |
3R | 18166026..18166160 | 346..480 | 100 | <- | Plus |
3R | 18166355..18166469 | 481..595 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:02 Download gff for
BO06642.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13991287..13991617 | 15..345 | 99 | <- | Plus |
arm_3R | 13991748..13991882 | 346..480 | 100 | <- | Plus |
arm_3R | 13992077..13992191 | 481..595 | 97 | | Plus |
BO06642.5prime Sequence
602 bp (601 high quality bases) assembled on 2005-12-03
> BO06642.5prime
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGGCAAGCTTTCTAGA
CC
BO06642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7217-PA | 573 | CG7217-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
CG7217-PB | 573 | CG7217-RB | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7215-RA | 1449 | CG7215-RA | 753..1322 | 17..586 | 2850 | 100 | Plus |
Prx5-RB | 733 | CG7217-RB | 37..606 | 17..586 | 2850 | 100 | Plus |
Prx5-RA | 1449 | CG7217-RA | 753..1322 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18165569..18165897 | 586..258 | 1645 | 100 | Minus |
3R | 32079331 | 3R | 18166026..18166160 | 259..125 | 675 | 100 | Minus |
3R | 32079331 | 3R | 18166352..18166462 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:46:55 has no hits.
BO06642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:26 Download gff for
BO06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:13 Download gff for
BO06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:35 Download gff for
BO06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 746..1325 | 10..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:39 Download gff for
BO06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5-RA | 746..1325 | 10..590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:39 Download gff for
BO06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18165565..18165895 | 260..590 | 99 | <- | Minus |
3R | 18166026..18166160 | 125..259 | 100 | <- | Minus |
3R | 18166355..18166469 | 10..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:35 Download gff for
BO06642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13991287..13991617 | 260..590 | 99 | <- | Minus |
arm_3R | 13991748..13991882 | 125..259 | 100 | <- | Minus |
arm_3R | 13992077..13992191 | 10..124 | 97 | | Minus |
BO06642.complete Sequence
604 bp (604 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630474
> BO06642.complete
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGGCAAGCTTTCTAGA
CCAT
BO06642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx5-RB | 573 | CG7217-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
Prx5-RA | 573 | CG7217-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7215-RA | 1449 | CG7215-RA | 753..1322 | 17..586 | 2850 | 100 | Plus |
Prx5-RB | 733 | CG7217-RB | 37..606 | 17..586 | 2850 | 100 | Plus |
Prx5-RA | 1449 | CG7217-RA | 753..1322 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18165569..18165897 | 586..258 | 1645 | 100 | Minus |
3R | 32079331 | 3R | 18166026..18166160 | 259..125 | 675 | 100 | Minus |
3R | 32079331 | 3R | 18166352..18166462 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:38:30 has no hits.
BO06642.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:11 Download gff for
BO06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-RB | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:48 Download gff for
BO06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 718..1297 | 10..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:39 Download gff for
BO06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 753..1322 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:11 Download gff for
BO06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 718..1297 | 10..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:28 Download gff for
BO06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5-RA | 753..1322 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:28 Download gff for
BO06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18165567..18165895 | 260..588 | 99 | <- | Minus |
3R | 18166026..18166160 | 125..259 | 100 | <- | Minus |
3R | 18166355..18166462 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:39 Download gff for
BO06642.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13991289..13991617 | 260..588 | 99 | <- | Minus |
arm_3R | 13991748..13991882 | 125..259 | 100 | <- | Minus |
arm_3R | 13992077..13992184 | 17..124 | 100 | | Minus |
BO06642.pep Sequence
Translation from 16 to 604
> BO06642.pep
MRVLSCKFLGRVVNSALPQQIISLRSLSKTSAAMVKVGDSLPSVDLFEDS
PANKINTGDLVNGKKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGV
DEIVCVSVNDPFVMSAWGKEHGAAGKVRLLADPAGGFTKALDVTIDLPPL
GGVRSKRYSLVVENGKVTELNVEPDGTGLSCSLANNIGKKASFLDH
BO06642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx5-PB | 190 | CG7217-PB | 1..190 | 1..190 | 969 | 100 | Plus |
Prx5-PA | 190 | CG7217-PA | 1..190 | 1..190 | 969 | 100 | Plus |