Clone BO06642 Report

Search the DGRC for BO06642

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptPrx5-RA
Protein status:BO06642.pep: validated full length
Sequenced Size:604

Clone Sequence Records

BO06642.3prime Sequence

602 bp (601 high quality bases) assembled on 2005-12-03

> BO06642.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCAATGTTGTTGGCCAGCGAGCAGC
TGAGTCCGGTGCCATCGGGCTCGACATTCAGCTCGGTCACCTTGCCGTTC
TCCACCACCAGCGAGTAGCGCTTTGAGCGCACGCCGCCAAGTGGTGGCAG
ATCGATGGTCACATCCAGGGCCTTGGTGAAACCGCCGGCGGGATCAGCTA
GGAGGCGCACCTTGCCCGCGGCTCCGTGCTCCTTGCCCCAGGCGGACATC
ACAAAGGGATCGTTGACCGAAACGCAGACAATCTCGTCCACGCCCTGCTT
GGACTTCAGCTCATCGGCGGAGCTCACATAGCCGGGCAAGTGGGTCTTTG
AGCAGCCTGGAGTGAAGGCGCCGGGAACGCCGAAGATGATCACCTTCTTG
CCATTGACGAGATCGCCGGTGTTGATTTTGTTGGCTGGCGAGTCCTCGAA
CAGATCCACCGATGGCAGGGAGTCTCCTACTTTCACCATAGCTGCACTGG
TTTTGGACAGGGATCGCAGTGAAATGATTTGTTGGGGCAGCGCGGAGTTA
ACAACTCGGCCAAGAAATTTGCACGACAGCACACGCATGTCGACTGATAA
CT

BO06642.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7217-PA 573 CG7217-RA 1..570 588..19 2850 100 Minus
CG7217-PB 573 CG7217-RB 1..570 588..19 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7215-RA 1449 CG7215-RA 753..1322 588..19 2850 100 Minus
Prx5-RB 733 CG7217-RB 37..606 588..19 2850 100 Minus
Prx5-RA 1449 CG7217-RA 753..1322 588..19 2850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18165569..18165897 19..347 1645 100 Plus
3R 32079331 3R 18166026..18166160 346..480 675 100 Plus
3R 32079331 3R 18166352..18166462 478..588 555 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:36:21 has no hits.

BO06642.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:25 Download gff for BO06642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 15..588 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:12 Download gff for BO06642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 15..588 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:02 Download gff for BO06642.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 746..1325 15..595 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:45 Download gff for BO06642.3prime
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 746..1325 15..595 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:45 Download gff for BO06642.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18165565..18165895 15..345 99 <- Plus
3R 18166026..18166160 346..480 100 <- Plus
3R 18166355..18166469 481..595 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:02 Download gff for BO06642.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13991287..13991617 15..345 99 <- Plus
arm_3R 13991748..13991882 346..480 100 <- Plus
arm_3R 13992077..13992191 481..595 97   Plus

BO06642.5prime Sequence

602 bp (601 high quality bases) assembled on 2005-12-03

> BO06642.5prime
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGGCAAGCTTTCTAGA
CC

BO06642.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7217-PA 573 CG7217-RA 1..570 17..586 2850 100 Plus
CG7217-PB 573 CG7217-RB 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7215-RA 1449 CG7215-RA 753..1322 17..586 2850 100 Plus
Prx5-RB 733 CG7217-RB 37..606 17..586 2850 100 Plus
Prx5-RA 1449 CG7217-RA 753..1322 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18165569..18165897 586..258 1645 100 Minus
3R 32079331 3R 18166026..18166160 259..125 675 100 Minus
3R 32079331 3R 18166352..18166462 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:46:55 has no hits.

BO06642.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:26 Download gff for BO06642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 17..590 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:13 Download gff for BO06642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:35 Download gff for BO06642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 746..1325 10..590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:39 Download gff for BO06642.5prime
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 746..1325 10..590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:39 Download gff for BO06642.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18165565..18165895 260..590 99 <- Minus
3R 18166026..18166160 125..259 100 <- Minus
3R 18166355..18166469 10..124 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:35 Download gff for BO06642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13991287..13991617 260..590 99 <- Minus
arm_3R 13991748..13991882 125..259 100 <- Minus
arm_3R 13992077..13992191 10..124 97   Minus

BO06642.complete Sequence

604 bp (604 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630474

> BO06642.complete
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGGCAAGCTTTCTAGA
CCAT

BO06642.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Prx5-RB 573 CG7217-PB 1..570 17..586 2850 100 Plus
Prx5-RA 573 CG7217-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7215-RA 1449 CG7215-RA 753..1322 17..586 2850 100 Plus
Prx5-RB 733 CG7217-RB 37..606 17..586 2850 100 Plus
Prx5-RA 1449 CG7217-RA 753..1322 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18165569..18165897 586..258 1645 100 Minus
3R 32079331 3R 18166026..18166160 259..125 675 100 Minus
3R 32079331 3R 18166352..18166462 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:38:30 has no hits.

BO06642.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:11 Download gff for BO06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG7217-RB 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:48 Download gff for BO06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 718..1297 10..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:39 Download gff for BO06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 753..1322 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:11 Download gff for BO06642.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 718..1297 10..590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:28 Download gff for BO06642.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 753..1322 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:28 Download gff for BO06642.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18165567..18165895 260..588 99 <- Minus
3R 18166026..18166160 125..259 100 <- Minus
3R 18166355..18166462 17..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:39 Download gff for BO06642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13991289..13991617 260..588 99 <- Minus
arm_3R 13991748..13991882 125..259 100 <- Minus
arm_3R 13992077..13992184 17..124 100   Minus

BO06642.pep Sequence

Translation from 16 to 604

> BO06642.pep
MRVLSCKFLGRVVNSALPQQIISLRSLSKTSAAMVKVGDSLPSVDLFEDS
PANKINTGDLVNGKKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGV
DEIVCVSVNDPFVMSAWGKEHGAAGKVRLLADPAGGFTKALDVTIDLPPL
GGVRSKRYSLVVENGKVTELNVEPDGTGLSCSLANNIGKKASFLDH

BO06642.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Prx5-PB 190 CG7217-PB 1..190 1..190 969 100 Plus
Prx5-PA 190 CG7217-PA 1..190 1..190 969 100 Plus