Clone BO06650 Report

Search the DGRC for BO06650

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptSras-RA
Protein status:BO06650.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO06650.3prime Sequence

938 bp (839 high quality bases) assembled on 2005-12-03

> BO06650.3prime
ATGGTCTAGAAAGCTTGCTGCATTCCAGTAAAGGGTGTTATCATAGATCG
ACGGATCGGTAGCCAGTGGTACCAGGAACATCCATCCAACAAATCCAGCT
AAGTAGAGAATAATGGCCACTACTCGTCGCCAGAGATCCTGCTGCCACAG
ATCCTGCAGATCCGGCAGACCCATGTGATTGCAAAACGCGTGCACCAAGA
TGGGAGCCATCACATGACCTGTACGGGCAAATAGAAAGGCCGAATAGAAG
CCAAATAGCGTGGTGTAGATGAACTGGAACAGTCCAATCAATAGGGCAGT
GCTCAACTCCACGCCTAAGCTCAGGCGTTCGGCTATGTGATGCAAGTGGG
CTACTCCGAAGAAAAGCGGCGTTATGAAAACGGCGACCAGGGGCGAAAAG
CTCTGCAGGATCAGGGGCATCATGCAGGCTCGGAACACGAACTCCTCGCT
CAGCGGTGCTATCACATGGTTGCGCACCCAGATGATGCTGCCAAATGATC
CCCTCCAGTAGTCCAGATCGAAGTAGGAGCGCACGGACTCGTTCTGCATG
TTGACAAAGATGGGTCCCAGGAAGAGCAGCACCGTCAGGCTGTATGGTAT
AACAACAGCCTGCCACAATCCCTCCAAGCGCAAACCGAGCAGCTTGGGAA
ATGGTACCCGGCTGAGCAGCTCCGGCGATGAGAAGAAGTAAACGAAGAAC
GGGGCTGCCAGCATCACCATGGACACACTGGCGAATCTTCTCTTGACCGT
GGTTGGATGATCCCGGTTGTGTTTGGTGCTCCAGATGTAGAGGCTACCCA
CGTACAGAACAGCCAGAACGAAGCAACAGCTCACCGAAGTGGCCACCGGG
ATCTGGGGCAATGATTCGTGGACTACATTTTCTTGCATGGTGACTTCGGC
TTCCGTCTCACTCAGGTTTTTCATGTCGACTGATAACT

BO06650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4852-PA 909 Sras-RA 1..906 924..19 4505 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Sras-RA 1271 CG4852-RA 88..993 924..19 4515 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5564325..5564825 519..19 2490 99.8 Minus
3L 28110227 3L 5563861..5564266 924..519 2030 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:05:14 has no hits.

BO06650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:40 Download gff for BO06650.3prime
Subject Subject Range Query Range Percent Splice Strand
Sras-PA 1..909 15..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:30 Download gff for BO06650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4852-PA 1..909 15..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:35 Download gff for BO06650.3prime
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 86..998 11..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:22:12 Download gff for BO06650.3prime
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 86..998 11..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:22:12 Download gff for BO06650.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5563859..5564266 519..927 99 -> Minus
3L 5564326..5564830 11..518 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:35 Download gff for BO06650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5556959..5557366 519..927 99 -> Minus
arm_3L 5557426..5557930 11..518 99   Minus

BO06650.5prime Sequence

845 bp (820 high quality bases) assembled on 2005-12-03

> BO06650.5prime
GAAGTTATCAGTCGACATGAAAAACCTGAGTGAGACGGAAGCCGAAGTCA
CCATGCAAGAAAATGTAGTCCACGAATCATTGCCCCAGATCCCGGTGGCC
ACTTCGGTGAGCTGTTGCTTCGTTCTGGCTGTTCTGTACGTGGGTAGCCT
CTACATCTGGAGCACCAAACACAACCGGGATCATCCAACCACGGTCAAGA
GAAGATTCGCCAGTGTGTCCATGGTGATGCTGGCAGCCCCGTTCTTCGTT
TACTTCTTCTCATCGCCGGAGCTGCTCAGCCGGGTACCATTTCCCAAGCT
GCTCGGTTTGCGCTTGGAGGGATTGTGGCAGGCTGTTGTTATACCATACA
GCCTGACGGTGCTGCTCTTCCTGGGACCCATCTTTGTCAACATGCAGAAC
GAGTCCGTGCGCTCCTACTTCGATCTGGACTACTGGAGGGGATCATTTGG
CAGCATCATCTGGGTGCGCAACCATGTGATAGCACCGCTGAGCGAGGAGT
TCGTGTTCCGAGCCTGCATGATGCCCCTGATCCTGCAGAGCTTTTCGCCC
CTGGTCGCCGTTTTCATAACGCCGCTTTTCTTCGGAGTAGCCCACTTGCA
TCACATAGCCGAACGCCTGAGCTTAGGCGTGGAGTTGAGCACTGCCCTAT
TGATTGGACTGTTCCAGTTCATCTACACCACGCTATTTGGCTTCTATTCG
GCCTTTCTATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCA
CGCGTTTTGCAATCACATGGGTCTGCCGGATCTGCAGGATCTGTGGCAGC
AGGATCTCTGGCGACGAGTAGTGGCCATTATTCTCTACTTAGCTG

BO06650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4852-PA 909 Sras-RA 1..829 17..845 4120 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sras-RA 1271 CG4852-RA 88..916 17..845 4130 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5564325..5564748 422..845 2105 99.8 Plus
3L 28110227 3L 5563861..5564266 17..422 2030 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:06:55 has no hits.

BO06650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:41 Download gff for BO06650.5prime
Subject Subject Range Query Range Percent Splice Strand
Sras-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:31 Download gff for BO06650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4852-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:30 Download gff for BO06650.5prime
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 86..916 14..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:09 Download gff for BO06650.5prime
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 86..916 14..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:09 Download gff for BO06650.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5563859..5564266 14..422 99 -> Plus
3L 5564326..5564748 423..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:30 Download gff for BO06650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5556959..5557366 14..422 99 -> Plus
arm_3L 5557426..5557848 423..845 99   Plus

BO06650.complete Sequence

940 bp (940 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630476

> BO06650.complete
GAAGTTATCAGTCGACATGAAAAACCTGAGTGAGACGGAAGCCGAAGTCA
CCATGCAAGAAAATGTAGTCCACGAATCATTGCCCCAGATCCCGGTGGCC
ACTTCGGTGAGCTGTTGCTTCGTTCTGGCTGTTCTGTACGTGGGTAGCCT
CTACATCTGGAGCACCAAACACAACCGGGATCATCCAACCACGGTCAAGA
GAAGATTCGCCAGTGTGTCCATGGTGATGCTGGCAGCCCCGTTCTTCGTT
TACTTCTTCTCATCGCCGGAGCTGCTCAGCCGGGTACCATTTCCCAAGCT
GCTCGGTTTGCGCTTGGAGGGATTGTGGCAGGCTGTTGTTATACCATACA
GCCTGACGGTGCTGCTCTTCCTGGGACCCATCTTTGTCAACATGCAGAAC
GAGTCCGTGCGCTCCTACTTCGATCTGGACTACTGGAGGGGATCATTTGG
CAGCATCATCTGGGTGCGCAACCATGTGATAGCACCGCTGAGCGAGGAGT
TCGTGTTCCGAGCCTGCATGATGCCCCTGATCCTGCAGAGCTTTTCGCCC
CTGGTCGCCGTTTTCATAACGCCGCTTTTCTTCGGAGTAGCCCACTTGCA
TCACATAGCCGAACGCCTGAGCTTAGGCGTGGAGTTGAGCACTGCCCTAT
TGATTGGACTGTTCCAGTTCATCTACACCACGCTATTTGGCTTCTATTCG
GCCTTTCTATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCA
CGCGTTTTGCAATCACATGGGTCTGCCGGATCTGCAGGATCTGTGGCAGC
AGGATCTCTGGCGACGAGTAGTGGCCATTATTCTCTACTTAGCTGGATTT
GTTGGATGGATGTTCCTGGTACCACTGGCTACCGATCCGTCGATCTATGA
TAACACCCTTTACTGGAATGCAGCAAGCTTTCTAGACCAT

BO06650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Sras-RA 909 CG4852-PA 1..906 17..922 4515 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sras-RA 1271 CG4852-RA 88..993 17..922 4515 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5564325..5564825 422..922 2490 99.8 Plus
3L 28110227 3L 5563861..5564266 17..422 2030 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:31:37 has no hits.

BO06650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:12 Download gff for BO06650.complete
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:49 Download gff for BO06650.complete
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 180..1092 14..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:35 Download gff for BO06650.complete
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 88..993 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:13 Download gff for BO06650.complete
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 180..1092 14..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:39 Download gff for BO06650.complete
Subject Subject Range Query Range Percent Splice Strand
Sras-RA 88..993 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:39 Download gff for BO06650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5563861..5564266 17..422 100 -> Plus
3L 5564326..5564825 423..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:35 Download gff for BO06650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5556961..5557366 17..422 100 -> Plus
arm_3L 5557426..5557925 423..924 99   Plus

BO06650.pep Sequence

Translation from 16 to 940

> BO06650.pep
MKNLSETEAEVTMQENVVHESLPQIPVATSVSCCFVLAVLYVGSLYIWST
KHNRDHPTTVKRRFASVSMVMLAAPFFVYFFSSPELLSRVPFPKLLGLRL
EGLWQAVVIPYSLTVLLFLGPIFVNMQNESVRSYFDLDYWRGSFGSIIWV
RNHVIAPLSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAER
LSLGVELSTALLIGLFQFIYTTLFGFYSAFLFARTGHVMAPILVHAFCNH
MGLPDLQDLWQQDLWRRVVAIILYLAGFVGWMFLVPLATDPSIYDNTLYW
NAASFLDH

BO06650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Sras-PA 302 CG4852-PA 1..302 1..302 1584 100 Plus