Clone Sequence Records
BO06650.3prime Sequence
938 bp (839 high quality bases) assembled on 2005-12-03
> BO06650.3prime
ATGGTCTAGAAAGCTTGCTGCATTCCAGTAAAGGGTGTTATCATAGATCG
ACGGATCGGTAGCCAGTGGTACCAGGAACATCCATCCAACAAATCCAGCT
AAGTAGAGAATAATGGCCACTACTCGTCGCCAGAGATCCTGCTGCCACAG
ATCCTGCAGATCCGGCAGACCCATGTGATTGCAAAACGCGTGCACCAAGA
TGGGAGCCATCACATGACCTGTACGGGCAAATAGAAAGGCCGAATAGAAG
CCAAATAGCGTGGTGTAGATGAACTGGAACAGTCCAATCAATAGGGCAGT
GCTCAACTCCACGCCTAAGCTCAGGCGTTCGGCTATGTGATGCAAGTGGG
CTACTCCGAAGAAAAGCGGCGTTATGAAAACGGCGACCAGGGGCGAAAAG
CTCTGCAGGATCAGGGGCATCATGCAGGCTCGGAACACGAACTCCTCGCT
CAGCGGTGCTATCACATGGTTGCGCACCCAGATGATGCTGCCAAATGATC
CCCTCCAGTAGTCCAGATCGAAGTAGGAGCGCACGGACTCGTTCTGCATG
TTGACAAAGATGGGTCCCAGGAAGAGCAGCACCGTCAGGCTGTATGGTAT
AACAACAGCCTGCCACAATCCCTCCAAGCGCAAACCGAGCAGCTTGGGAA
ATGGTACCCGGCTGAGCAGCTCCGGCGATGAGAAGAAGTAAACGAAGAAC
GGGGCTGCCAGCATCACCATGGACACACTGGCGAATCTTCTCTTGACCGT
GGTTGGATGATCCCGGTTGTGTTTGGTGCTCCAGATGTAGAGGCTACCCA
CGTACAGAACAGCCAGAACGAAGCAACAGCTCACCGAAGTGGCCACCGGG
ATCTGGGGCAATGATTCGTGGACTACATTTTCTTGCATGGTGACTTCGGC
TTCCGTCTCACTCAGGTTTTTCATGTCGACTGATAACT
BO06650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4852-PA | 909 | Sras-RA | 1..906 | 924..19 | 4505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sras-RA | 1271 | CG4852-RA | 88..993 | 924..19 | 4515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5564325..5564825 | 519..19 | 2490 | 99.8 | Minus |
3L | 28110227 | 3L | 5563861..5564266 | 924..519 | 2030 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:05:14 has no hits.
BO06650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:40 Download gff for
BO06650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-PA | 1..909 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:30 Download gff for
BO06650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4852-PA | 1..909 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:35 Download gff for
BO06650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 86..998 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:22:12 Download gff for
BO06650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 86..998 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:22:12 Download gff for
BO06650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5563859..5564266 | 519..927 | 99 | -> | Minus |
3L | 5564326..5564830 | 11..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:35 Download gff for
BO06650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5556959..5557366 | 519..927 | 99 | -> | Minus |
arm_3L | 5557426..5557930 | 11..518 | 99 | | Minus |
BO06650.5prime Sequence
845 bp (820 high quality bases) assembled on 2005-12-03
> BO06650.5prime
GAAGTTATCAGTCGACATGAAAAACCTGAGTGAGACGGAAGCCGAAGTCA
CCATGCAAGAAAATGTAGTCCACGAATCATTGCCCCAGATCCCGGTGGCC
ACTTCGGTGAGCTGTTGCTTCGTTCTGGCTGTTCTGTACGTGGGTAGCCT
CTACATCTGGAGCACCAAACACAACCGGGATCATCCAACCACGGTCAAGA
GAAGATTCGCCAGTGTGTCCATGGTGATGCTGGCAGCCCCGTTCTTCGTT
TACTTCTTCTCATCGCCGGAGCTGCTCAGCCGGGTACCATTTCCCAAGCT
GCTCGGTTTGCGCTTGGAGGGATTGTGGCAGGCTGTTGTTATACCATACA
GCCTGACGGTGCTGCTCTTCCTGGGACCCATCTTTGTCAACATGCAGAAC
GAGTCCGTGCGCTCCTACTTCGATCTGGACTACTGGAGGGGATCATTTGG
CAGCATCATCTGGGTGCGCAACCATGTGATAGCACCGCTGAGCGAGGAGT
TCGTGTTCCGAGCCTGCATGATGCCCCTGATCCTGCAGAGCTTTTCGCCC
CTGGTCGCCGTTTTCATAACGCCGCTTTTCTTCGGAGTAGCCCACTTGCA
TCACATAGCCGAACGCCTGAGCTTAGGCGTGGAGTTGAGCACTGCCCTAT
TGATTGGACTGTTCCAGTTCATCTACACCACGCTATTTGGCTTCTATTCG
GCCTTTCTATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCA
CGCGTTTTGCAATCACATGGGTCTGCCGGATCTGCAGGATCTGTGGCAGC
AGGATCTCTGGCGACGAGTAGTGGCCATTATTCTCTACTTAGCTG
BO06650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4852-PA | 909 | Sras-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sras-RA | 1271 | CG4852-RA | 88..916 | 17..845 | 4130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5564325..5564748 | 422..845 | 2105 | 99.8 | Plus |
3L | 28110227 | 3L | 5563861..5564266 | 17..422 | 2030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:06:55 has no hits.
BO06650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:41 Download gff for
BO06650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:31 Download gff for
BO06650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4852-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:30 Download gff for
BO06650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 86..916 | 14..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:09 Download gff for
BO06650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 86..916 | 14..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:09 Download gff for
BO06650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5563859..5564266 | 14..422 | 99 | -> | Plus |
3L | 5564326..5564748 | 423..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:30 Download gff for
BO06650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5556959..5557366 | 14..422 | 99 | -> | Plus |
arm_3L | 5557426..5557848 | 423..845 | 99 | | Plus |
BO06650.complete Sequence
940 bp (940 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630476
> BO06650.complete
GAAGTTATCAGTCGACATGAAAAACCTGAGTGAGACGGAAGCCGAAGTCA
CCATGCAAGAAAATGTAGTCCACGAATCATTGCCCCAGATCCCGGTGGCC
ACTTCGGTGAGCTGTTGCTTCGTTCTGGCTGTTCTGTACGTGGGTAGCCT
CTACATCTGGAGCACCAAACACAACCGGGATCATCCAACCACGGTCAAGA
GAAGATTCGCCAGTGTGTCCATGGTGATGCTGGCAGCCCCGTTCTTCGTT
TACTTCTTCTCATCGCCGGAGCTGCTCAGCCGGGTACCATTTCCCAAGCT
GCTCGGTTTGCGCTTGGAGGGATTGTGGCAGGCTGTTGTTATACCATACA
GCCTGACGGTGCTGCTCTTCCTGGGACCCATCTTTGTCAACATGCAGAAC
GAGTCCGTGCGCTCCTACTTCGATCTGGACTACTGGAGGGGATCATTTGG
CAGCATCATCTGGGTGCGCAACCATGTGATAGCACCGCTGAGCGAGGAGT
TCGTGTTCCGAGCCTGCATGATGCCCCTGATCCTGCAGAGCTTTTCGCCC
CTGGTCGCCGTTTTCATAACGCCGCTTTTCTTCGGAGTAGCCCACTTGCA
TCACATAGCCGAACGCCTGAGCTTAGGCGTGGAGTTGAGCACTGCCCTAT
TGATTGGACTGTTCCAGTTCATCTACACCACGCTATTTGGCTTCTATTCG
GCCTTTCTATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCA
CGCGTTTTGCAATCACATGGGTCTGCCGGATCTGCAGGATCTGTGGCAGC
AGGATCTCTGGCGACGAGTAGTGGCCATTATTCTCTACTTAGCTGGATTT
GTTGGATGGATGTTCCTGGTACCACTGGCTACCGATCCGTCGATCTATGA
TAACACCCTTTACTGGAATGCAGCAAGCTTTCTAGACCAT
BO06650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sras-RA | 909 | CG4852-PA | 1..906 | 17..922 | 4515 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sras-RA | 1271 | CG4852-RA | 88..993 | 17..922 | 4515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5564325..5564825 | 422..922 | 2490 | 99.8 | Plus |
3L | 28110227 | 3L | 5563861..5564266 | 17..422 | 2030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:37 has no hits.
BO06650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:12 Download gff for
BO06650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:49 Download gff for
BO06650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 180..1092 | 14..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:35 Download gff for
BO06650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 88..993 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:13 Download gff for
BO06650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 180..1092 | 14..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:39 Download gff for
BO06650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sras-RA | 88..993 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:39 Download gff for
BO06650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5563861..5564266 | 17..422 | 100 | -> | Plus |
3L | 5564326..5564825 | 423..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:35 Download gff for
BO06650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5556961..5557366 | 17..422 | 100 | -> | Plus |
arm_3L | 5557426..5557925 | 423..924 | 99 | | Plus |
BO06650.pep Sequence
Translation from 16 to 940
> BO06650.pep
MKNLSETEAEVTMQENVVHESLPQIPVATSVSCCFVLAVLYVGSLYIWST
KHNRDHPTTVKRRFASVSMVMLAAPFFVYFFSSPELLSRVPFPKLLGLRL
EGLWQAVVIPYSLTVLLFLGPIFVNMQNESVRSYFDLDYWRGSFGSIIWV
RNHVIAPLSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAER
LSLGVELSTALLIGLFQFIYTTLFGFYSAFLFARTGHVMAPILVHAFCNH
MGLPDLQDLWQQDLWRRVVAIILYLAGFVGWMFLVPLATDPSIYDNTLYW
NAASFLDH
BO06650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sras-PA | 302 | CG4852-PA | 1..302 | 1..302 | 1584 | 100 | Plus |