Clone Sequence Records
BO06654.5prime Sequence
434 bp (433 high quality bases) assembled on 2005-12-03
> BO06654.5prime
GAAGTTATCAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCG
CCTTGATGAGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATC
GCCATCATCAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTA
TGCCTATGAGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGA
AGAAGGCCACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCG
GTGTCGTACACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGC
CGATGATGAGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGC
CACCAATCCCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTG
CCACCGGCAAAGCGTCGTGCAAGCTTTCTAGACC
BO06654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8505-PA | 405 | CG8505-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
CG32405-PA | 336 | CG32405-RA | 289..327 | 305..343 | 170 | 97.4 | Plus |
CG30045-PA | 993 | CG30045-RA | 751..812 | 317..378 | 160 | 90.3 | Plus |
CG12330-PA | 720 | CG12330-RA | 547..590 | 311..354 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 1186 | CG8505-RA | 107..508 | 17..418 | 2010 | 100 | Plus |
Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 308..378 | 235 | 88.7 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 305..343 | 180 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12404166..12404430 | 154..418 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 12403381..12403508 | 26..153 | 640 | 100 | Plus |
2R | 25286936 | 2R | 12377158..12377228 | 308..378 | 235 | 88.7 | Plus |
3L | 28110227 | 3L | 6139425..6139463 | 343..305 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:20:12 has no hits.
BO06654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:49 Download gff for
BO06654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:42 Download gff for
BO06654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:00 Download gff for
BO06654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:30 Download gff for
BO06654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 17..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:30 Download gff for
BO06654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12403381..12403508 | 22..153 | 96 | -> | Plus |
2R | 12404166..12404430 | 154..418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:00 Download gff for
BO06654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8290886..8291013 | 22..153 | 96 | -> | Plus |
arm_2R | 8291671..8291935 | 154..418 | 100 | | Plus |
BO06654.3prime Sequence
434 bp (433 high quality bases) assembled on 2005-12-03
> BO06654.3prime
ATGGTCTAGAAAGCTTGCACGACGCTTTGCCGGTGGCAGGCTGAGCAGGT
AGTCAAGGGCCTTCTGGATCGCTGGCGGGATTGGTGGCGGAGTGGGCAGA
TGATCGCCCTGCGGCTGGAAACCGTTCTCATCATCGGCGGAGTAGTTCAG
TGTGATCAGGTTACCCTCGGGCGAGGTGTACGACACCGATCCCCTGGCGA
TGATCACGTCACTGGAGTCTGGCGAAGTGGCCTTCTTCAGGGTTCCGGTC
TCCTCAGCTTTGATTCCATTGGCCGTCTCATAGGCATAGTTGTAGGATCC
ATCTGGCTCAATGTTGGACTCCTGGCTGATGATGGCGATGGGCTCCTCCG
CCTTTTGGGGGGCAGCCTGGCAGCAGCTCATCAAGGCGGTGGCCAGCAGA
CAGAGAGCAAAGTTCTTCATGTCGACTGATAACT
BO06654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8505-PA | 405 | CG8505-RA | 1..402 | 420..19 | 2010 | 100 | Minus |
CG32405-PA | 336 | CG32405-RA | 289..327 | 132..94 | 170 | 97.4 | Minus |
CG30045-PA | 993 | CG30045-RA | 751..812 | 120..59 | 160 | 90.3 | Minus |
CG12330-PA | 720 | CG12330-RA | 547..590 | 126..83 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 1186 | CG8505-RA | 107..508 | 420..19 | 2010 | 100 | Minus |
Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 129..59 | 235 | 88.7 | Minus |
Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 132..94 | 180 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12404166..12404430 | 283..19 | 1325 | 100 | Minus |
2R | 25286936 | 2R | 12403381..12403508 | 411..284 | 640 | 100 | Minus |
2R | 25286936 | 2R | 12377158..12377228 | 129..59 | 235 | 88.7 | Minus |
3L | 28110227 | 3L | 6139425..6139463 | 94..132 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:05:36 has no hits.
BO06654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:48 Download gff for
BO06654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 18..420 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:41 Download gff for
BO06654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 18..420 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:40 Download gff for
BO06654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 19..420 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:23:50 Download gff for
BO06654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 19..420 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:23:50 Download gff for
BO06654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12404166..12404430 | 19..283 | 100 | | Minus |
2R | 12403381..12403508 | 284..415 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:40 Download gff for
BO06654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8290886..8291013 | 284..415 | 96 | -> | Minus |
arm_2R | 8291671..8291935 | 19..283 | 100 | | Minus |
BO06654.complete Sequence
436 bp (436 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630478
> BO06654.complete
GAAGTTATCAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCG
CCTTGATGAGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATC
GCCATCATCAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTA
TGCCTATGAGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGA
AGAAGGCCACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCG
GTGTCGTACACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGC
CGATGATGAGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGC
CACCAATCCCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTG
CCACCGGCAAAGCGTCGTGCAAGCTTTCTAGACCAT
BO06654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 405 | CG8505-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
Cpr49Aa-RB | 435 | CG30045-PB | 292..362 | 308..378 | 235 | 88.7 | Plus |
Cpr65Av-RA | 336 | CG32405-PA | 289..327 | 305..343 | 180 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 1186 | CG8505-RA | 107..508 | 17..418 | 2010 | 100 | Plus |
Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 308..378 | 235 | 88.7 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 305..343 | 180 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12404166..12404430 | 154..418 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 12403381..12403508 | 26..153 | 640 | 100 | Plus |
2R | 25286936 | 2R | 12377158..12377228 | 308..378 | 235 | 88.7 | Plus |
3L | 28110227 | 3L | 6139425..6139463 | 343..305 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:30 has no hits.
BO06654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:56 Download gff for
BO06654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 1..405 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:09 Download gff for
BO06654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 108..509 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:43 Download gff for
BO06654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:56 Download gff for
BO06654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 108..509 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:50 Download gff for
BO06654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:50 Download gff for
BO06654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12403381..12403508 | 26..153 | 100 | -> | Plus |
2R | 12404166..12404430 | 154..420 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:43 Download gff for
BO06654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8290886..8291013 | 26..153 | 100 | -> | Plus |
arm_2R | 8291671..8291935 | 154..420 | 99 | | Plus |
BO06654.pep Sequence
Translation from 16 to 436
> BO06654.pep
MKNFALCLLATALMSCCQAAPQKAEEPIAIISQESNIEPDGSYNYAYETA
NGIKAEETGTLKKATSPDSSDVIIARGSVSYTSPEGNLITLNYSADDENG
FQPQGDHLPTPPPIPPAIQKALDYLLSLPPAKRRASFLDH
BO06654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-PA | 134 | CG8505-PA | 1..134 | 1..134 | 696 | 100 | Plus |
Cpr49Aa-PB | 144 | CG30045-PB | 3..130 | 4..130 | 347 | 58 | Plus |
Cpr65Az-PA | 239 | CG12330-PA | 112..209 | 26..125 | 296 | 64 | Plus |
Cpr67Fa1-PA | 134 | CG7941-PA | 2..117 | 4..129 | 251 | 44.1 | Plus |
Cpr78Cc-PA | 119 | CG7658-PA | 1..117 | 1..130 | 250 | 44.7 | Plus |