Clone BO06655 Report

Search the DGRC for BO06655

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptRpLP0-like-RA
Protein status:BO06655.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO06655.5prime Sequence

800 bp (680 high quality bases) assembled on 2005-12-03

> BO06655.5prime
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTCGACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAAGCAAGCTTTCTAGACC

BO06655.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1381-PA 771 CG1381-RA 1..768 17..784 3790 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 948 CG1381-RA 105..872 17..784 3810 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10098594..10099087 784..291 2440 99.6 Minus
2R 25286936 2R 10099146..10099395 292..43 1250 100 Minus
Blast to na_te.dros performed 2015-02-11 03:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 887..942 675..730 109 66.1 Plus

BO06655.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:50 Download gff for BO06655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:45 Download gff for BO06655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:28 Download gff for BO06655.5prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..875 9..788 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:47:09 Download gff for BO06655.5prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..875 9..788 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:47:09 Download gff for BO06655.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10099146..10099393 45..292 100 <- Minus
2R 10098590..10099085 293..788 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:28 Download gff for BO06655.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5986095..5986590 293..788 99 <- Minus
arm_2R 5986651..5986898 45..292 100 <- Minus

BO06655.3prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-03

> BO06655.3prime
ATGGTCTAGAAAGCTTGCTTCATCATCCTCCTCTTCGTCATCATCGTCGT
CGTTGTCATCCATGGCCTCGGCCTCGGCCTCCTCTTCCATTGCGCTATCA
GCCTGTTCCTCGTCGTTCACATCATCCTCGACATGCAGCTGGAAGCCTTC
GCTTTTTGTCCACGAGCACTTCATGGTCAGCCGAAATTTGGCCATGGGCT
TGCCCACCAGCTTGAGGATTCTCGCCTGTTCGGGTGTTAGAACTTTGCCC
TCCTCACAAACCGTGTAGTCACTGTACAGCGTAACGATTCCCTTCTCCAA
TTTGGTGGGCAGGCCCAGGGAACGCAGATGCGGTTCCATAGAGTGGGCGA
AGTCCTCTAGGGGACCTGCTGGCAGGGTAACCGTTTCCGTGGCCACAAAG
CCACTGCGTGCGTATTCCACGGCCCAGTAGTTTTCTGCCCACTCCAGGAC
TTCCTCCTTGGATTTGTCCGTGAAAAGCAGTCCCACCTGGCCAGTTAATC
GCTTGGATAGCTTGTGCAATTCCGGCTCCACTTCCTCGCTCTTCGTGCGA
CCCAAGCCAATCTGCATAACACGATTCTTGCCAAAGATAAAACGAGAATT
CTTTTTCAACTCCTGTCGCAGATCCTTCAGCAAGCTATTCCTCATGTTCT
GAACTTGGAAAACGAATATATTTGGGTATTTGCCCACGCAGAACCGAATG
TCGTCCACAATGCGCTGTTTCCAAGCCAGACCCTTGCGGTCGGTTTTGGT
CAGGGAAACTTTCTTATCACGTTTGGAGCGCGGCATGTCGACTGATAACT

BO06655.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1381-PA 771 CG1381-RA 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 948 CG1381-RA 105..872 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10098594..10099087 19..512 2470 100 Plus
2R 25286936 2R 10099146..10099395 511..760 1250 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:20:32 has no hits.

BO06655.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:49 Download gff for BO06655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:44 Download gff for BO06655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:01 Download gff for BO06655.3prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..875 15..794 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:39 Download gff for BO06655.3prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..875 15..794 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:39 Download gff for BO06655.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10098590..10099085 15..510 99 <- Plus
2R 10099146..10099393 511..758 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:01 Download gff for BO06655.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5986095..5986590 15..510 99 <- Plus
arm_2R 5986651..5986898 511..758 100 <- Plus

BO06655.complete Sequence

802 bp (802 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630479

> BO06655.complete
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAAGCAAGCTTTCTAGACC
AT

BO06655.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 771 CG1381-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 948 CG1381-RA 105..872 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10098594..10099087 784..291 2470 100 Minus
2R 25286936 2R 10099146..10099395 292..43 1250 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:35:39 has no hits.

BO06655.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:57 Download gff for BO06655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1381-RA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:28 Download gff for BO06655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1381-RA 96..871 9..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:48 Download gff for BO06655.complete
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 105..872 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:58 Download gff for BO06655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1381-RA 96..871 9..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:48 Download gff for BO06655.complete
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 105..872 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:48 Download gff for BO06655.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10098592..10099085 293..786 99 <- Minus
2R 10099146..10099393 45..292 100 <- Minus
2R 10099459..10099486 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:48 Download gff for BO06655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5986097..5986590 293..786 99 <- Minus
arm_2R 5986651..5986898 45..292 100 <- Minus
arm_2R 5986964..5986991 17..44 100   Minus

BO06655.pep Sequence

Translation from 16 to 802

> BO06655.pep
MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRN
SLLKDLRQELKKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQ
VGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETVTLPAGPLEDFAHSM
EPHLRSLGLPTKLEKGIVTLYSDYTVCEEGKVLTPEQARILKLVGKPMAK
FRLTMKCSWTKSEGFQLHVEDDVNDEEQADSAMEEEAEAEAMDDNDDDDD
EEEDDEASFLDH

BO06655.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-PA 256 CG1381-PA 1..256 1..256 1331 100 Plus