Clone Sequence Records
BO06655.5prime Sequence
800 bp (680 high quality bases) assembled on 2005-12-03
> BO06655.5prime
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTCGACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAAGCAAGCTTTCTAGACC
BO06655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1381-PA | 771 | CG1381-RA | 1..768 | 17..784 | 3790 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 948 | CG1381-RA | 105..872 | 17..784 | 3810 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10098594..10099087 | 784..291 | 2440 | 99.6 | Minus |
2R | 25286936 | 2R | 10099146..10099395 | 292..43 | 1250 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 887..942 | 675..730 | 109 | 66.1 | Plus |
BO06655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:50 Download gff for
BO06655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:45 Download gff for
BO06655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:28 Download gff for
BO06655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..875 | 9..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:47:09 Download gff for
BO06655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..875 | 9..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:47:09 Download gff for
BO06655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10099146..10099393 | 45..292 | 100 | <- | Minus |
2R | 10098590..10099085 | 293..788 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:28 Download gff for
BO06655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5986095..5986590 | 293..788 | 99 | <- | Minus |
arm_2R | 5986651..5986898 | 45..292 | 100 | <- | Minus |
BO06655.3prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-03
> BO06655.3prime
ATGGTCTAGAAAGCTTGCTTCATCATCCTCCTCTTCGTCATCATCGTCGT
CGTTGTCATCCATGGCCTCGGCCTCGGCCTCCTCTTCCATTGCGCTATCA
GCCTGTTCCTCGTCGTTCACATCATCCTCGACATGCAGCTGGAAGCCTTC
GCTTTTTGTCCACGAGCACTTCATGGTCAGCCGAAATTTGGCCATGGGCT
TGCCCACCAGCTTGAGGATTCTCGCCTGTTCGGGTGTTAGAACTTTGCCC
TCCTCACAAACCGTGTAGTCACTGTACAGCGTAACGATTCCCTTCTCCAA
TTTGGTGGGCAGGCCCAGGGAACGCAGATGCGGTTCCATAGAGTGGGCGA
AGTCCTCTAGGGGACCTGCTGGCAGGGTAACCGTTTCCGTGGCCACAAAG
CCACTGCGTGCGTATTCCACGGCCCAGTAGTTTTCTGCCCACTCCAGGAC
TTCCTCCTTGGATTTGTCCGTGAAAAGCAGTCCCACCTGGCCAGTTAATC
GCTTGGATAGCTTGTGCAATTCCGGCTCCACTTCCTCGCTCTTCGTGCGA
CCCAAGCCAATCTGCATAACACGATTCTTGCCAAAGATAAAACGAGAATT
CTTTTTCAACTCCTGTCGCAGATCCTTCAGCAAGCTATTCCTCATGTTCT
GAACTTGGAAAACGAATATATTTGGGTATTTGCCCACGCAGAACCGAATG
TCGTCCACAATGCGCTGTTTCCAAGCCAGACCCTTGCGGTCGGTTTTGGT
CAGGGAAACTTTCTTATCACGTTTGGAGCGCGGCATGTCGACTGATAACT
BO06655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1381-PA | 771 | CG1381-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 948 | CG1381-RA | 105..872 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10098594..10099087 | 19..512 | 2470 | 100 | Plus |
2R | 25286936 | 2R | 10099146..10099395 | 511..760 | 1250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:20:32 has no hits.
BO06655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:49 Download gff for
BO06655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:44 Download gff for
BO06655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:01 Download gff for
BO06655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..875 | 15..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:39 Download gff for
BO06655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..875 | 15..794 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:39 Download gff for
BO06655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10098590..10099085 | 15..510 | 99 | <- | Plus |
2R | 10099146..10099393 | 511..758 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:01 Download gff for
BO06655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5986095..5986590 | 15..510 | 99 | <- | Plus |
arm_2R | 5986651..5986898 | 511..758 | 100 | <- | Plus |
BO06655.complete Sequence
802 bp (802 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630479
> BO06655.complete
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAAGCAAGCTTTCTAGACC
AT
BO06655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 771 | CG1381-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 948 | CG1381-RA | 105..872 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10098594..10099087 | 784..291 | 2470 | 100 | Minus |
2R | 25286936 | 2R | 10099146..10099395 | 292..43 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:35:39 has no hits.
BO06655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:57 Download gff for
BO06655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-RA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:28 Download gff for
BO06655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-RA | 96..871 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:48 Download gff for
BO06655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 105..872 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:58 Download gff for
BO06655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-RA | 96..871 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:48 Download gff for
BO06655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 105..872 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:48 Download gff for
BO06655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10098592..10099085 | 293..786 | 99 | <- | Minus |
2R | 10099146..10099393 | 45..292 | 100 | <- | Minus |
2R | 10099459..10099486 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:48 Download gff for
BO06655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5986097..5986590 | 293..786 | 99 | <- | Minus |
arm_2R | 5986651..5986898 | 45..292 | 100 | <- | Minus |
arm_2R | 5986964..5986991 | 17..44 | 100 | | Minus |
BO06655.pep Sequence
Translation from 16 to 802
> BO06655.pep
MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRN
SLLKDLRQELKKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQ
VGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETVTLPAGPLEDFAHSM
EPHLRSLGLPTKLEKGIVTLYSDYTVCEEGKVLTPEQARILKLVGKPMAK
FRLTMKCSWTKSEGFQLHVEDDVNDEEQADSAMEEEAEAEAMDDNDDDDD
EEEDDEASFLDH
BO06655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-PA | 256 | CG1381-PA | 1..256 | 1..256 | 1331 | 100 | Plus |