Clone Sequence Records
BO06658.3prime Sequence
767 bp (766 high quality bases) assembled on 2005-12-03
> BO06658.3prime
ATGGTCTAGAAAGCTTGCTATGTAATCCTTGAAATCATTCTGTGCGAAAA
CCTGAACGGTGAGCGTTAGTAGTAGGTTGTAGGGAGCTGCCCGTTGCACT
TCGTCCTCCTTAAGTTGATTTCTCAGATGGATGCAGGTTCGGGCGATGTA
TCGAAGGGTGCTGAACACGTGAGGTTCCAGTGGAAGGTGGAGGCAGACCA
AGGTGGCATACAGCCAGCGAGCCAGCCAGACATCGTGGAGAAGGTCTACC
GTGGTGTTGGGATCCTGCAGCCACTTGCTGAGCATTTCCAGCAAGAGCTC
CAAGTCGTTTTGGGTCAAATGGAGCAGGGTGCTCAGGAGGGGCTGCTGAT
TCCGGCAGAATTCCTTCCATTTCTCCTGGTCGGAAGTCAAAGGTGGTTCC
CCGGACTGGTCGTAGTTGTTGTTGGCCAACTCCTTACGAAGAACTAGGAC
CTGGGAGCGGGCTGCTTGGAAGGATTTAACTTGCTCATCCCGCCATTCGG
GCGTGGGCAGCAGGCACTTGAACGGAGGCAACTCGGGATTGTCCAACATC
TCTAAAGTGGTATTTCCCGTGTTATTCCTGATTTTGGATGATCTTTTGGT
CACCACAGCTGGACATCGCTTCCTCTCGTAGAACATGTGCATTAGGTACT
CTTCCCCGGACTCTGGCGGCTTCTGGGGGTCAAAACTGCTATCCGGCTCA
CAGATCTCCAGTGCCTGGAGTTGAAAAGTCTGATCTTCGGGCTCATGCTG
CATGTCGACTGATAACT
BO06658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10419-PA | 738 | CG10419-RA | 1..735 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 1123 | CG10419-RB | 26..762 | 755..19 | 3685 | 100 | Minus |
Gem2-RA | 1182 | CG10419-RA | 85..821 | 755..19 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19099484..19100002 | 19..537 | 2595 | 100 | Plus |
3L | 28110227 | 3L | 19100054..19100271 | 538..755 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:17:42 has no hits.
BO06658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:55 Download gff for
BO06658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 18..753 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:50 Download gff for
BO06658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 18..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:51 Download gff for
BO06658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..821 | 19..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:07 Download gff for
BO06658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..821 | 19..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:07 Download gff for
BO06658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19099484..19100002 | 19..537 | 100 | <- | Plus |
3L | 19100054..19100275 | 538..759 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:51 Download gff for
BO06658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19092584..19093102 | 19..537 | 100 | <- | Plus |
arm_3L | 19093154..19093375 | 538..759 | 99 | | Plus |
BO06658.5prime Sequence
767 bp (766 high quality bases) assembled on 2005-12-03
> BO06658.5prime
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
AGCAAGCTTTCTAGACC
BO06658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10419-PA | 738 | CG10419-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 1123 | CG10419-RB | 26..762 | 15..751 | 3685 | 100 | Plus |
Gem2-RA | 1182 | CG10419-RA | 85..821 | 15..751 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19099484..19100002 | 751..233 | 2595 | 100 | Minus |
3L | 28110227 | 3L | 19100054..19100271 | 232..15 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:29:09 has no hits.
BO06658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:56 Download gff for
BO06658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:52 Download gff for
BO06658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-PA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:49 Download gff for
BO06658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..821 | 11..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:10:53 Download gff for
BO06658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 81..821 | 11..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:10:53 Download gff for
BO06658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19099484..19100002 | 233..751 | 100 | <- | Minus |
3L | 19100054..19100275 | 11..232 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:49 Download gff for
BO06658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19092584..19093102 | 233..751 | 100 | <- | Minus |
arm_3L | 19093154..19093375 | 11..232 | 99 | | Minus |
BO06658.complete Sequence
769 bp (769 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630480
> BO06658.complete
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
AGCAAGCTTTCTAGACCAT
BO06658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 738 | CG10419-PB | 1..735 | 17..751 | 3675 | 100 | Plus |
Gem2-RA | 738 | CG10419-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-RB | 1123 | CG10419-RB | 26..762 | 15..751 | 3685 | 100 | Plus |
Gem2-RA | 1182 | CG10419-RA | 85..821 | 15..751 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19099484..19100002 | 751..233 | 2595 | 100 | Minus |
3L | 28110227 | 3L | 19100054..19100271 | 232..15 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:34:13 has no hits.
BO06658.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:59 Download gff for
BO06658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-RA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:29 Download gff for
BO06658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-RA | 60..800 | 11..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:39 Download gff for
BO06658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 87..821 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:59 Download gff for
BO06658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10419-RA | 60..800 | 11..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:59 Download gff for
BO06658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gem2-RA | 87..821 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:59 Download gff for
BO06658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19099482..19100002 | 233..753 | 99 | <- | Minus |
3L | 19100054..19100269 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:39 Download gff for
BO06658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19092582..19093102 | 233..753 | 99 | <- | Minus |
arm_3L | 19093154..19093369 | 17..232 | 100 | | Minus |
BO06658.pep Sequence
Translation from 16 to 769
> BO06658.pep
MQHEPEDQTFQLQALEICEPDSSFDPQKPPESGEEYLMHMFYERKRCPAV
VTKRSSKIRNNTGNTTLEMLDNPELPPFKCLLPTPEWRDEQVKSFQAARS
QVLVLRKELANNNYDQSGEPPLTSDQEKWKEFCRNQQPLLSTLLHLTQND
LELLLEMLSKWLQDPNTTVDLLHDVWLARWLYATLVCLHLPLEPHVFSTL
RYIARTCIHLRNQLKEDEVQRAAPYNLLLTLTVQVFAQNDFKDYIASFLD
H
BO06658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gem2-PB | 245 | CG10419-PB | 1..245 | 1..245 | 1311 | 100 | Plus |
Gem2-PA | 245 | CG10419-PA | 1..245 | 1..245 | 1311 | 100 | Plus |