Clone BO06658 Report

Search the DGRC for BO06658

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptGem2-RA
Protein status:BO06658.pep: validated full length
Sequenced Size:769

Clone Sequence Records

BO06658.3prime Sequence

767 bp (766 high quality bases) assembled on 2005-12-03

> BO06658.3prime
ATGGTCTAGAAAGCTTGCTATGTAATCCTTGAAATCATTCTGTGCGAAAA
CCTGAACGGTGAGCGTTAGTAGTAGGTTGTAGGGAGCTGCCCGTTGCACT
TCGTCCTCCTTAAGTTGATTTCTCAGATGGATGCAGGTTCGGGCGATGTA
TCGAAGGGTGCTGAACACGTGAGGTTCCAGTGGAAGGTGGAGGCAGACCA
AGGTGGCATACAGCCAGCGAGCCAGCCAGACATCGTGGAGAAGGTCTACC
GTGGTGTTGGGATCCTGCAGCCACTTGCTGAGCATTTCCAGCAAGAGCTC
CAAGTCGTTTTGGGTCAAATGGAGCAGGGTGCTCAGGAGGGGCTGCTGAT
TCCGGCAGAATTCCTTCCATTTCTCCTGGTCGGAAGTCAAAGGTGGTTCC
CCGGACTGGTCGTAGTTGTTGTTGGCCAACTCCTTACGAAGAACTAGGAC
CTGGGAGCGGGCTGCTTGGAAGGATTTAACTTGCTCATCCCGCCATTCGG
GCGTGGGCAGCAGGCACTTGAACGGAGGCAACTCGGGATTGTCCAACATC
TCTAAAGTGGTATTTCCCGTGTTATTCCTGATTTTGGATGATCTTTTGGT
CACCACAGCTGGACATCGCTTCCTCTCGTAGAACATGTGCATTAGGTACT
CTTCCCCGGACTCTGGCGGCTTCTGGGGGTCAAAACTGCTATCCGGCTCA
CAGATCTCCAGTGCCTGGAGTTGAAAAGTCTGATCTTCGGGCTCATGCTG
CATGTCGACTGATAACT

BO06658.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10419-PA 738 CG10419-RA 1..735 753..19 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 1123 CG10419-RB 26..762 755..19 3685 100 Minus
Gem2-RA 1182 CG10419-RA 85..821 755..19 3685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19099484..19100002 19..537 2595 100 Plus
3L 28110227 3L 19100054..19100271 538..755 1090 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:17:42 has no hits.

BO06658.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:55 Download gff for BO06658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 18..753 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:50 Download gff for BO06658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 18..753 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:51 Download gff for BO06658.3prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..821 19..759 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:07 Download gff for BO06658.3prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..821 19..759 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:07 Download gff for BO06658.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19099484..19100002 19..537 100 <- Plus
3L 19100054..19100275 538..759 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:51 Download gff for BO06658.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19092584..19093102 19..537 100 <- Plus
arm_3L 19093154..19093375 538..759 99   Plus

BO06658.5prime Sequence

767 bp (766 high quality bases) assembled on 2005-12-03

> BO06658.5prime
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
AGCAAGCTTTCTAGACC

BO06658.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10419-PA 738 CG10419-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 1123 CG10419-RB 26..762 15..751 3685 100 Plus
Gem2-RA 1182 CG10419-RA 85..821 15..751 3685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19099484..19100002 751..233 2595 100 Minus
3L 28110227 3L 19100054..19100271 232..15 1090 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:29:09 has no hits.

BO06658.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:55:56 Download gff for BO06658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 17..752 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:52 Download gff for BO06658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10419-PA 1..738 17..752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:49 Download gff for BO06658.5prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..821 11..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:10:53 Download gff for BO06658.5prime
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 81..821 11..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:10:53 Download gff for BO06658.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19099484..19100002 233..751 100 <- Minus
3L 19100054..19100275 11..232 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:49 Download gff for BO06658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19092584..19093102 233..751 100 <- Minus
arm_3L 19093154..19093375 11..232 99   Minus

BO06658.complete Sequence

769 bp (769 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630480

> BO06658.complete
GAAGTTATCAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAAC
TCCAGGCACTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAG
CCGCCAGAGTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAA
GCGATGTCCAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACA
CGGGAAATACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTC
AAGTGCCTGCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTT
CCAAGCAGCCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACA
ACAACTACGACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAA
TGGAAGGAATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCA
TTTGACCCAAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGC
TGCAGGATCCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCT
CGCTGGCTGTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCA
CGTGTTCAGCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAA
ATCAACTTAAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTA
CTAACGCTCACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACAT
AGCAAGCTTTCTAGACCAT

BO06658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 738 CG10419-PB 1..735 17..751 3675 100 Plus
Gem2-RA 738 CG10419-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-RB 1123 CG10419-RB 26..762 15..751 3685 100 Plus
Gem2-RA 1182 CG10419-RA 85..821 15..751 3685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19099484..19100002 751..233 2595 100 Minus
3L 28110227 3L 19100054..19100271 232..15 1090 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:34:13 has no hits.

BO06658.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:59 Download gff for BO06658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10419-RA 1..738 17..752 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:29 Download gff for BO06658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10419-RA 60..800 11..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:39 Download gff for BO06658.complete
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 87..821 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:59 Download gff for BO06658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10419-RA 60..800 11..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:59 Download gff for BO06658.complete
Subject Subject Range Query Range Percent Splice Strand
Gem2-RA 87..821 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:59 Download gff for BO06658.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19099482..19100002 233..753 99 <- Minus
3L 19100054..19100269 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:39 Download gff for BO06658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19092582..19093102 233..753 99 <- Minus
arm_3L 19093154..19093369 17..232 100   Minus

BO06658.pep Sequence

Translation from 16 to 769

> BO06658.pep
MQHEPEDQTFQLQALEICEPDSSFDPQKPPESGEEYLMHMFYERKRCPAV
VTKRSSKIRNNTGNTTLEMLDNPELPPFKCLLPTPEWRDEQVKSFQAARS
QVLVLRKELANNNYDQSGEPPLTSDQEKWKEFCRNQQPLLSTLLHLTQND
LELLLEMLSKWLQDPNTTVDLLHDVWLARWLYATLVCLHLPLEPHVFSTL
RYIARTCIHLRNQLKEDEVQRAAPYNLLLTLTVQVFAQNDFKDYIASFLD
H

BO06658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Gem2-PB 245 CG10419-PB 1..245 1..245 1311 100 Plus
Gem2-PA 245 CG10419-PA 1..245 1..245 1311 100 Plus