Clone Sequence Records
BO06660.3prime Sequence
689 bp (688 high quality bases) assembled on 2005-12-03
> BO06660.3prime
ATGGTCTAGAAAGCTTGCTATCTGCCGCTCATCCTTAGCCGTCAGCTTGT
CGATGAGCTCCTGCAGCGGGGCCAGTTCGCGCCGCTCAATCAGATTGAAC
TCCTGCACGAAGAAGATGAAGTGCTTGAAGGACGTGTTGAGATGGGCCTC
CTCGCCAAGCGTCACCACCTCTGTGAAGTGCTGGTGGTAGATGTGCGCAT
ACACGCGGAACAGACGCTTCAGTATGGTCTTGGCGGAGGAGTGAAAGTTC
TTTGGAAACGGCACGCCGATCTTGGAGGGAAACAGGGTCTCGTCGTCCAG
CTGATCCTGCACCCAAGTCATCAGATAGTCAATATACTTGGGCGCGCTGC
ACTTGATGGGCTTCTTTACGGTCAAACCGTCGGCCCAGTGGTACTCGTAT
TTCGGACCAGCCGACATGATGCCACAGGTCTCCTCGGTGCAGAACTCGGT
GATGGTGCCGTACAGCATGTTGATCTGGTTGAAAAAGTCCACGGTGTTAA
CGGCCACCCACTCGTTGAGATCCTCGCCATCTGGAAGGGCCACTGCATTG
CGCAGGTTTCCCGATCCCAGCGTGGCTGCCGCATGCTTCATGAGATCATA
TTGGTGTGTGCCTTCCGGGATGTTCTTCTTGGGCTTGAAGGTCTTGCTGG
AACGGGAACCGAACAAGAAGTCCATGTCGACTGATAACT
BO06660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13852-PA | 660 | mats-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 1096 | CG13852-RC | 264..921 | 676..19 | 3290 | 100 | Minus |
mats-RB | 1716 | CG13852-RB | 428..1085 | 676..19 | 3290 | 100 | Minus |
mats-RA | 1260 | CG13852-RA | 428..1085 | 676..19 | 3290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22422196..22422671 | 494..19 | 2380 | 100 | Minus |
3R | 32079331 | 3R | 22421968..22422134 | 661..495 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:05:54 has no hits.
BO06660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:00 Download gff for
BO06660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:56 Download gff for
BO06660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13852-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:27 Download gff for
BO06660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1085 | 19..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:39 Download gff for
BO06660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1085 | 19..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:39 Download gff for
BO06660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22421968..22422134 | 495..661 | 100 | -> | Minus |
3R | 22422196..22422671 | 19..494 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:27 Download gff for
BO06660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18247690..18247856 | 495..661 | 100 | -> | Minus |
arm_3R | 18247918..18248393 | 19..494 | 100 | | Minus |
BO06660.5prime Sequence
689 bp (688 high quality bases) assembled on 2005-12-03
> BO06660.5prime
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATAGCAAGCTTTCTAGACC
BO06660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13852-PA | 660 | mats-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 1096 | CG13852-RC | 264..921 | 16..673 | 3290 | 100 | Plus |
mats-RB | 1716 | CG13852-RB | 428..1085 | 16..673 | 3290 | 100 | Plus |
mats-RA | 1260 | CG13852-RA | 428..1085 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22422196..22422671 | 198..673 | 2380 | 100 | Plus |
3R | 32079331 | 3R | 22421968..22422134 | 31..197 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:47:05 has no hits.
BO06660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:01 Download gff for
BO06660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:57 Download gff for
BO06660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13852-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:39 Download gff for
BO06660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1085 | 5..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:48 Download gff for
BO06660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 420..1085 | 5..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:48 Download gff for
BO06660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22421968..22422134 | 31..197 | 100 | -> | Plus |
3R | 22422196..22422671 | 198..673 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:39 Download gff for
BO06660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18247690..18247856 | 31..197 | 100 | -> | Plus |
arm_3R | 18247918..18248393 | 198..673 | 100 | | Plus |
BO06660.complete Sequence
691 bp (691 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630481
> BO06660.complete
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATAGCAAGCTTTCTAGACCAT
BO06660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 660 | CG13852-PC | 1..657 | 17..673 | 3285 | 100 | Plus |
mats-RB | 660 | CG13852-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
mats-RA | 660 | CG13852-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-RC | 1096 | CG13852-RC | 264..921 | 16..673 | 3290 | 100 | Plus |
mats-RB | 1716 | CG13852-RB | 428..1085 | 16..673 | 3290 | 100 | Plus |
mats-RA | 1260 | CG13852-RA | 428..1085 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22422196..22422671 | 198..673 | 2380 | 100 | Plus |
3R | 32079331 | 3R | 22421968..22422134 | 31..197 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:24:08 has no hits.
BO06660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:10 Download gff for
BO06660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:21 Download gff for
BO06660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 426..1091 | 5..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:51 Download gff for
BO06660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 429..1085 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:10 Download gff for
BO06660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 426..1091 | 5..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:11 Download gff for
BO06660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mats-RA | 429..1085 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:11 Download gff for
BO06660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22421968..22422134 | 31..197 | 100 | -> | Plus |
3R | 22422196..22422671 | 198..675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:51 Download gff for
BO06660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18247690..18247856 | 31..197 | 100 | -> | Plus |
arm_3R | 18247918..18248393 | 198..675 | 99 | | Plus |
BO06660.pep Sequence
Translation from 16 to 691
> BO06660.pep
MDFLFGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGSGNLRNAVALPDG
EDLNEWVAVNTVDFFNQINMLYGTITEFCTEETCGIMSAGPKYEYHWADG
LTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFHSSAKT
ILKRLFRVYAHIYHQHFTEVVTLGEEAHLNTSFKHFIFFVQEFNLIERRE
LAPLQELIDKLTAKDERQIASFLDH
BO06660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mats-PC | 219 | CG13852-PC | 1..219 | 1..219 | 1169 | 100 | Plus |
mats-PB | 219 | CG13852-PB | 1..219 | 1..219 | 1169 | 100 | Plus |
mats-PA | 219 | CG13852-PA | 1..219 | 1..219 | 1169 | 100 | Plus |
Mob3-PA | 220 | CG4946-PA | 6..215 | 3..211 | 612 | 52.9 | Plus |
Mob2-PC | 431 | CG11711-PC | 31..209 | 36..216 | 360 | 40.3 | Plus |