Clone BO06660 Report

Search the DGRC for BO06660

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptmats-RA
Protein status:BO06660.pep: validated full length
Sequenced Size:691

Clone Sequence Records

BO06660.3prime Sequence

689 bp (688 high quality bases) assembled on 2005-12-03

> BO06660.3prime
ATGGTCTAGAAAGCTTGCTATCTGCCGCTCATCCTTAGCCGTCAGCTTGT
CGATGAGCTCCTGCAGCGGGGCCAGTTCGCGCCGCTCAATCAGATTGAAC
TCCTGCACGAAGAAGATGAAGTGCTTGAAGGACGTGTTGAGATGGGCCTC
CTCGCCAAGCGTCACCACCTCTGTGAAGTGCTGGTGGTAGATGTGCGCAT
ACACGCGGAACAGACGCTTCAGTATGGTCTTGGCGGAGGAGTGAAAGTTC
TTTGGAAACGGCACGCCGATCTTGGAGGGAAACAGGGTCTCGTCGTCCAG
CTGATCCTGCACCCAAGTCATCAGATAGTCAATATACTTGGGCGCGCTGC
ACTTGATGGGCTTCTTTACGGTCAAACCGTCGGCCCAGTGGTACTCGTAT
TTCGGACCAGCCGACATGATGCCACAGGTCTCCTCGGTGCAGAACTCGGT
GATGGTGCCGTACAGCATGTTGATCTGGTTGAAAAAGTCCACGGTGTTAA
CGGCCACCCACTCGTTGAGATCCTCGCCATCTGGAAGGGCCACTGCATTG
CGCAGGTTTCCCGATCCCAGCGTGGCTGCCGCATGCTTCATGAGATCATA
TTGGTGTGTGCCTTCCGGGATGTTCTTCTTGGGCTTGAAGGTCTTGCTGG
AACGGGAACCGAACAAGAAGTCCATGTCGACTGATAACT

BO06660.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13852-PA 660 mats-RA 1..657 675..19 3285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 1096 CG13852-RC 264..921 676..19 3290 100 Minus
mats-RB 1716 CG13852-RB 428..1085 676..19 3290 100 Minus
mats-RA 1260 CG13852-RA 428..1085 676..19 3290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22422196..22422671 494..19 2380 100 Minus
3R 32079331 3R 22421968..22422134 661..495 835 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:05:54 has no hits.

BO06660.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:00 Download gff for BO06660.3prime
Subject Subject Range Query Range Percent Splice Strand
mats-PA 1..660 18..675 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:56 Download gff for BO06660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13852-PA 1..660 18..675 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:27 Download gff for BO06660.3prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1085 19..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:39 Download gff for BO06660.3prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1085 19..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:39 Download gff for BO06660.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22421968..22422134 495..661 100 -> Minus
3R 22422196..22422671 19..494 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:27 Download gff for BO06660.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18247690..18247856 495..661 100 -> Minus
arm_3R 18247918..18248393 19..494 100   Minus

BO06660.5prime Sequence

689 bp (688 high quality bases) assembled on 2005-12-03

> BO06660.5prime
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATAGCAAGCTTTCTAGACC

BO06660.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13852-PA 660 mats-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 1096 CG13852-RC 264..921 16..673 3290 100 Plus
mats-RB 1716 CG13852-RB 428..1085 16..673 3290 100 Plus
mats-RA 1260 CG13852-RA 428..1085 16..673 3290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22422196..22422671 198..673 2380 100 Plus
3R 32079331 3R 22421968..22422134 31..197 835 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:47:05 has no hits.

BO06660.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:01 Download gff for BO06660.5prime
Subject Subject Range Query Range Percent Splice Strand
mats-PA 1..660 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:57 Download gff for BO06660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13852-PA 1..660 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:39 Download gff for BO06660.5prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1085 5..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:48 Download gff for BO06660.5prime
Subject Subject Range Query Range Percent Splice Strand
mats-RA 420..1085 5..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:48 Download gff for BO06660.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22421968..22422134 31..197 100 -> Plus
3R 22422196..22422671 198..673 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:39 Download gff for BO06660.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18247690..18247856 31..197 100 -> Plus
arm_3R 18247918..18248393 198..673 100   Plus

BO06660.complete Sequence

691 bp (691 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630481

> BO06660.complete
GAAGTTATCAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGA
CCTTCAAGCCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTC
ATGAAGCATGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGT
GGCCCTTCCAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCG
TGGACTTTTTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTC
TGCACCGAGGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTA
CCACTGGGCCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGC
CCAAGTATATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGAC
GAGACCCTGTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCA
CTCCTCCGCCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACA
TCTACCACCAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCAT
CTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCT
GATTGAGCGGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGA
CGGCTAAGGATGAGCGGCAGATAGCAAGCTTTCTAGACCAT

BO06660.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 660 CG13852-PC 1..657 17..673 3285 100 Plus
mats-RB 660 CG13852-PB 1..657 17..673 3285 100 Plus
mats-RA 660 CG13852-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
mats-RC 1096 CG13852-RC 264..921 16..673 3290 100 Plus
mats-RB 1716 CG13852-RB 428..1085 16..673 3290 100 Plus
mats-RA 1260 CG13852-RA 428..1085 16..673 3290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22422196..22422671 198..673 2380 100 Plus
3R 32079331 3R 22421968..22422134 31..197 835 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:24:08 has no hits.

BO06660.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:10 Download gff for BO06660.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 1..660 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:21 Download gff for BO06660.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 426..1091 5..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:51 Download gff for BO06660.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 429..1085 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:10 Download gff for BO06660.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 426..1091 5..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:11 Download gff for BO06660.complete
Subject Subject Range Query Range Percent Splice Strand
mats-RA 429..1085 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:11 Download gff for BO06660.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22421968..22422134 31..197 100 -> Plus
3R 22422196..22422671 198..675 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:51 Download gff for BO06660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18247690..18247856 31..197 100 -> Plus
arm_3R 18247918..18248393 198..675 99   Plus

BO06660.pep Sequence

Translation from 16 to 691

> BO06660.pep
MDFLFGSRSSKTFKPKKNIPEGTHQYDLMKHAAATLGSGNLRNAVALPDG
EDLNEWVAVNTVDFFNQINMLYGTITEFCTEETCGIMSAGPKYEYHWADG
LTVKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFHSSAKT
ILKRLFRVYAHIYHQHFTEVVTLGEEAHLNTSFKHFIFFVQEFNLIERRE
LAPLQELIDKLTAKDERQIASFLDH

BO06660.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
mats-PC 219 CG13852-PC 1..219 1..219 1169 100 Plus
mats-PB 219 CG13852-PB 1..219 1..219 1169 100 Plus
mats-PA 219 CG13852-PA 1..219 1..219 1169 100 Plus
Mob3-PA 220 CG4946-PA 6..215 3..211 612 52.9 Plus
Mob2-PC 431 CG11711-PC 31..209 36..216 360 40.3 Plus