Clone BO06662 Report

Search the DGRC for BO06662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG1236-RA
Protein status:BO06662.pep: validated full length
Sequenced Size:1075

Clone Sequence Records

BO06662.3prime Sequence

978 bp (833 high quality bases) assembled on 2005-12-03

> BO06662.3prime
ATGGTCTAGAAAGCTTGCCAGCTCTACTTCGGCTACCATTTTATCGCCAG
CTAAGGCAGCAAGAATATTTCTGGCTGTAATCCGGGACATTTCCTTGCGC
GTTTCGATGTCAGCGCTGCCAATGTGGGGGAGAATAACCACATTATCCAG
TTTCAGAAGAGGATCGTCGATTGGCAATGGCTCCGGCGTCGTTACATCCA
GACCAGCTGCTAGAATTCGTTTGGTTTTCAGTGCCTCGTACAGGGCCTTC
TGGTCTACAACGCCACCACGCGCCGTGTTGATAAGAATGCAGTTGGGCTT
CATCTTCTGAAAGGCAGTGGCATTGAAGATTTCCTTAGTCTCCGGGGTTA
GGGCGCAACAGACTACGATTAAGTCCGACTCGCGAAGCATCTCGTCAAAG
TCCACGTGCCGGGCATTCACAGCAGCCGCCTCCTTGGGGCGCAGTGATCG
TGTTGTGTATGTTATCTCCGTCGGCTTAAATGGCACAATGCGTGCCGCTA
TCTCTTGGCCGATGCGGCCGAAGCCCAGCAGGCCGACCCGGGAGCCCTTC
AGTCCCTGGCCGCACATCCACATGGGGGCCCACGACTTCCAGCCGCCGTT
GTAAACCTGCTTGTTGGCCTCGAATAGTCGGCGGTTGGTGGCCAGAAGCA
GGGCAAGCGTTAATTCTGCCGTGGCATCCGTTAGGACGTCCGGTGTGAAG
CCCACTCGAATTCCACGTTTCCTGCACTCCTCCACGTCGATGTGATCGTA
ACCCACCGAAATAGTTGCCACGCACTTCAACTGAGGACCGGCAGCATCCA
AGACTTCCTTGTCAACCTTGTCCGTTAGAGCGCAGTAAAGGGCATCTTTT
CCGGCCACGACGCGGATAAGCTCGGAGCGGGGCACCGGATTGGTCTCATG
CCAGGTACTCACTTGGCAGCTCTTGCGCAGCAGCTCCAGACCGCTGTCAT
CCACATCCGGNCTGGNTACGTACACCTT

BO06662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-PA 1044 CG1236-RA 82..1041 978..19 4762 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1190 CG1236-RA 123..1082 978..19 4778 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5737003..5737905 921..19 4515 100 Minus
3R 32079331 3R 5736870..5736928 978..920 273 96.6 Minus
Blast to na_te.dros performed on 2015-02-13 05:20:44 has no hits.

BO06662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:02 Download gff for BO06662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 82..1044 15..978 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:58 Download gff for BO06662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 82..1044 15..978 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:03 Download gff for BO06662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 123..1093 7..978 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:43 Download gff for BO06662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 123..1093 7..978 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:43 Download gff for BO06662.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5736870..5736928 920..978 96 -> Minus
3R 5737005..5737916 7..919 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:03 Download gff for BO06662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1562592..1562650 920..978 96 -> Minus
arm_3R 1562727..1563638 7..919 99   Minus

BO06662.5prime Sequence

929 bp (822 high quality bases) assembled on 2005-12-03

> BO06662.5prime
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCCAAACGAATCTAGCAGCTGGTCTGGGATGTACGACGCCGGAAGCATT
GCCAATCGACGATCCTCTTCTGAAACTGG

BO06662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-PA 1044 CG1236-RA 1..837 17..853 4185 100 Plus
CG1236-PA 1044 CG1236-RA 868..913 884..929 180 95.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1190 CG1236-RA 42..954 17..929 4445 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5737003..5737777 155..929 3695 98.5 Plus
3R 32079331 3R 5736789..5736928 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:07:06 has no hits.

BO06662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:03 Download gff for BO06662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:00 Download gff for BO06662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:32 Download gff for BO06662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 39..954 12..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:11 Download gff for BO06662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 39..954 12..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:11 Download gff for BO06662.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5736786..5736928 12..156 98 -> Plus
3R 5737005..5737777 157..929 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:32 Download gff for BO06662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1562508..1562650 12..156 98 -> Plus
arm_3R 1562727..1563499 157..929 99   Plus

BO06662.complete Sequence

1075 bp (1075 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630482

> BO06662.complete
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCAAACGAATTCTAGCAGCTGGTCTGGATGTAACGACGCCGGAGCCATT
GCCAATCGACGATCCTCTTCTGAAACTGGATAATGTGGTTATTCTCCCCC
ACATTGGCAGCGCTGACATCGAAACGCGCAAGGAAATGTCCCGGATTACA
GCCAGAAATATTCTTGCTGCCTTAGCTGGCGATAAAATGGTAGCCGAAGT
AGAGCTGGCAAGCTTTCTAGACCAT

BO06662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1044 CG1236-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1190 CG1236-RA 42..1082 17..1057 5205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5737003..5737905 155..1057 4515 100 Plus
3R 32079331 3R 5736789..5736928 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:54:47 has no hits.

BO06662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:00 Download gff for BO06662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 1..1044 17..1061 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:31 Download gff for BO06662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 43..1097 12..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:11 Download gff for BO06662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 42..1082 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:00 Download gff for BO06662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 43..1097 12..1069 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:10 Download gff for BO06662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 42..1082 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:10 Download gff for BO06662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5736789..5736928 17..156 100 -> Plus
3R 5737005..5737905 157..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:11 Download gff for BO06662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1562511..1562650 17..156 100 -> Plus
arm_3R 1562727..1563627 157..1059 99   Plus

BO06662.pep Sequence

Translation from 16 to 1075

> BO06662.pep
MPPRLPFGQVRNLLIQGHIIRRMSSQHKVYVTRPDVDDSGLELLRKSCQV
STWHETNPVPRSELIRVVAGKDALYCALTDKVDKEVLDAAGPQLKCVATI
SVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANK
QVYNGGWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEIT
YTTRSLRPKEAAAVNARHVDFDEMLRESDLIVVCCALTPETKEIFNATAF
QKMKPNCILINTARGGVVDQKALYEALKTKRILAAGLDVTTPEPLPIDDP
LLKLDNVVILPHIGSADIETRKEMSRITARNILAALAGDKMVAEVELASF
LDH

BO06662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-PA 347 CG1236-PA 1..347 1..347 1787 100 Plus
CG9331-PK 326 CG9331-PK 8..323 28..343 728 47 Plus
CG9331-PJ 326 CG9331-PJ 8..323 28..343 728 47 Plus
CG9331-PG 326 CG9331-PG 8..323 28..343 728 47 Plus
CG9331-PF 326 CG9331-PF 8..323 28..343 728 47 Plus