Clone Sequence Records
BO06662.3prime Sequence
978 bp (833 high quality bases) assembled on 2005-12-03
> BO06662.3prime
ATGGTCTAGAAAGCTTGCCAGCTCTACTTCGGCTACCATTTTATCGCCAG
CTAAGGCAGCAAGAATATTTCTGGCTGTAATCCGGGACATTTCCTTGCGC
GTTTCGATGTCAGCGCTGCCAATGTGGGGGAGAATAACCACATTATCCAG
TTTCAGAAGAGGATCGTCGATTGGCAATGGCTCCGGCGTCGTTACATCCA
GACCAGCTGCTAGAATTCGTTTGGTTTTCAGTGCCTCGTACAGGGCCTTC
TGGTCTACAACGCCACCACGCGCCGTGTTGATAAGAATGCAGTTGGGCTT
CATCTTCTGAAAGGCAGTGGCATTGAAGATTTCCTTAGTCTCCGGGGTTA
GGGCGCAACAGACTACGATTAAGTCCGACTCGCGAAGCATCTCGTCAAAG
TCCACGTGCCGGGCATTCACAGCAGCCGCCTCCTTGGGGCGCAGTGATCG
TGTTGTGTATGTTATCTCCGTCGGCTTAAATGGCACAATGCGTGCCGCTA
TCTCTTGGCCGATGCGGCCGAAGCCCAGCAGGCCGACCCGGGAGCCCTTC
AGTCCCTGGCCGCACATCCACATGGGGGCCCACGACTTCCAGCCGCCGTT
GTAAACCTGCTTGTTGGCCTCGAATAGTCGGCGGTTGGTGGCCAGAAGCA
GGGCAAGCGTTAATTCTGCCGTGGCATCCGTTAGGACGTCCGGTGTGAAG
CCCACTCGAATTCCACGTTTCCTGCACTCCTCCACGTCGATGTGATCGTA
ACCCACCGAAATAGTTGCCACGCACTTCAACTGAGGACCGGCAGCATCCA
AGACTTCCTTGTCAACCTTGTCCGTTAGAGCGCAGTAAAGGGCATCTTTT
CCGGCCACGACGCGGATAAGCTCGGAGCGGGGCACCGGATTGGTCTCATG
CCAGGTACTCACTTGGCAGCTCTTGCGCAGCAGCTCCAGACCGCTGTCAT
CCACATCCGGNCTGGNTACGTACACCTT
BO06662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-PA | 1044 | CG1236-RA | 82..1041 | 978..19 | 4762 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1190 | CG1236-RA | 123..1082 | 978..19 | 4778 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5737003..5737905 | 921..19 | 4515 | 100 | Minus |
3R | 32079331 | 3R | 5736870..5736928 | 978..920 | 273 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:20:44 has no hits.
BO06662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:02 Download gff for
BO06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 82..1044 | 15..978 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:30:58 Download gff for
BO06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 82..1044 | 15..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:03 Download gff for
BO06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 123..1093 | 7..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:43 Download gff for
BO06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 123..1093 | 7..978 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:43 Download gff for
BO06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5736870..5736928 | 920..978 | 96 | -> | Minus |
3R | 5737005..5737916 | 7..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:03 Download gff for
BO06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1562592..1562650 | 920..978 | 96 | -> | Minus |
arm_3R | 1562727..1563638 | 7..919 | 99 | | Minus |
BO06662.5prime Sequence
929 bp (822 high quality bases) assembled on 2005-12-03
> BO06662.5prime
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCCAAACGAATCTAGCAGCTGGTCTGGGATGTACGACGCCGGAAGCATT
GCCAATCGACGATCCTCTTCTGAAACTGG
BO06662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-PA | 1044 | CG1236-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
CG1236-PA | 1044 | CG1236-RA | 868..913 | 884..929 | 180 | 95.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1190 | CG1236-RA | 42..954 | 17..929 | 4445 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5737003..5737777 | 155..929 | 3695 | 98.5 | Plus |
3R | 32079331 | 3R | 5736789..5736928 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:07:06 has no hits.
BO06662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:03 Download gff for
BO06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:00 Download gff for
BO06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:32 Download gff for
BO06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 39..954 | 12..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:11 Download gff for
BO06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 39..954 | 12..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:11 Download gff for
BO06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5736786..5736928 | 12..156 | 98 | -> | Plus |
3R | 5737005..5737777 | 157..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:32 Download gff for
BO06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1562508..1562650 | 12..156 | 98 | -> | Plus |
arm_3R | 1562727..1563499 | 157..929 | 99 | | Plus |
BO06662.complete Sequence
1075 bp (1075 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630482
> BO06662.complete
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCAAACGAATTCTAGCAGCTGGTCTGGATGTAACGACGCCGGAGCCATT
GCCAATCGACGATCCTCTTCTGAAACTGGATAATGTGGTTATTCTCCCCC
ACATTGGCAGCGCTGACATCGAAACGCGCAAGGAAATGTCCCGGATTACA
GCCAGAAATATTCTTGCTGCCTTAGCTGGCGATAAAATGGTAGCCGAAGT
AGAGCTGGCAAGCTTTCTAGACCAT
BO06662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1044 | CG1236-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1190 | CG1236-RA | 42..1082 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5737003..5737905 | 155..1057 | 4515 | 100 | Plus |
3R | 32079331 | 3R | 5736789..5736928 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:54:47 has no hits.
BO06662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:00 Download gff for
BO06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 1..1044 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:31 Download gff for
BO06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 43..1097 | 12..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:11 Download gff for
BO06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 42..1082 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:00 Download gff for
BO06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 43..1097 | 12..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:10 Download gff for
BO06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 42..1082 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:10 Download gff for
BO06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5736789..5736928 | 17..156 | 100 | -> | Plus |
3R | 5737005..5737905 | 157..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:11 Download gff for
BO06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1562511..1562650 | 17..156 | 100 | -> | Plus |
arm_3R | 1562727..1563627 | 157..1059 | 99 | | Plus |
BO06662.pep Sequence
Translation from 16 to 1075
> BO06662.pep
MPPRLPFGQVRNLLIQGHIIRRMSSQHKVYVTRPDVDDSGLELLRKSCQV
STWHETNPVPRSELIRVVAGKDALYCALTDKVDKEVLDAAGPQLKCVATI
SVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANK
QVYNGGWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEIT
YTTRSLRPKEAAAVNARHVDFDEMLRESDLIVVCCALTPETKEIFNATAF
QKMKPNCILINTARGGVVDQKALYEALKTKRILAAGLDVTTPEPLPIDDP
LLKLDNVVILPHIGSADIETRKEMSRITARNILAALAGDKMVAEVELASF
LDH
BO06662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-PA | 347 | CG1236-PA | 1..347 | 1..347 | 1787 | 100 | Plus |
CG9331-PK | 326 | CG9331-PK | 8..323 | 28..343 | 728 | 47 | Plus |
CG9331-PJ | 326 | CG9331-PJ | 8..323 | 28..343 | 728 | 47 | Plus |
CG9331-PG | 326 | CG9331-PG | 8..323 | 28..343 | 728 | 47 | Plus |
CG9331-PF | 326 | CG9331-PF | 8..323 | 28..343 | 728 | 47 | Plus |