Clone BO06663 Report

Search the DGRC for BO06663

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG9362-RA
Protein status:BO06663.pep: validated full length
Sequenced Size:772

Clone Sequence Records

BO06663.3prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-03

> BO06663.3prime
ATGGTCTAGAAAGCTTGCTTTTTTTGCGAATTCAGGTGGACAATCTGGCT
GGGTACTGGGATGAGTGGCTTTGAAGACATCAAGTTCTTGTAGTTCCTGA
TTCAAGCGTACTATGGTGGGATATGGGGTCAGGTCAGCTTTGTATCTCCT
GGCATTGCGCACCTGAGGTACCAGGCAAATATCAGCCATGCTGAGCTCAT
CTCCCACACAGAATTTGCCCGCCGAATGGGAAAGAACCTTTTCGAGACCC
TGAAATCCTCGAGAAATCCAGTGTTGTGCCCATTGCAGACTCTGATCCTT
GCCTATATGATCTAGGACAGATACATTTTGCAGTGGCTGGATGCCCGAGC
AAATGAGCTCCACAATTTCACGGATCTTTGCTCTTTTAACCGGATCCTGG
GGCAGAAGTGCTGGCTGAGGTCGAGTTTCCTCCAGGTAGTGGATAATAGC
CACCGAGTCGCACAAGGTATGGCCATCAATCTTCAACGAGGGAACCTTTT
GCATCGGATTGACTTCCCTATATTCATCCGTATAGGCATGTCCGCTAACT
GTTTTTAGCAAAGAAGTCGGCTTAATGTCATAATCAATCTTCTTTATTGC
CAGCGCAACGCGAACTCTCCAAGAACACGAACTAGGCCAATAGGAATACA
GTATAGGCTTTGTTGCCAAATGTCGGAACAAGGGCTTAGACCAAGAAGAT
CTGTACAGTCCGGCCAAATGGATACCTCTGTGGGTCAATTGGGTAGCAGA
AGCCATGTCGACTGATAACT

BO06663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9362-PA 741 CG9362-RA 1..738 756..19 3665 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ1-RA 913 CG9362-RA 102..839 756..19 3675 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9455781..9456112 146..477 1645 99.7 Plus
3R 32079331 3R 9456166..9456445 477..756 1400 100 Plus
3R 32079331 3R 9455591..9455719 19..147 645 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:05:58 has no hits.

BO06663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:04 Download gff for BO06663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9362-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:02 Download gff for BO06663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9362-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:30 Download gff for BO06663.3prime
Subject Subject Range Query Range Percent Splice Strand
GstZ1-RA 97..842 15..764 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:51 Download gff for BO06663.3prime
Subject Subject Range Query Range Percent Splice Strand
GstZ1-RA 97..842 15..764 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:51 Download gff for BO06663.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9455588..9455717 15..145 98 <- Plus
3R 9455781..9456111 146..476 99 <- Plus
3R 9456166..9456450 477..764 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:30 Download gff for BO06663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5281310..5281439 15..145 98 <- Plus
arm_3R 5281503..5281833 146..476 99 <- Plus
arm_3R 5281888..5282172 477..764 98   Plus

BO06663.5prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-03

> BO06663.5prime
GAAGTTATCAGTCGACATGGCTTCTGCTACCCAATTGACCCACAGAGGTA
TCCATTTGGCCGGACTGTACAGATCTTCTTGGTCTAAGCCCTTGTTCCGA
CATTTGGCAACAAAGCCTATACTGTATTCCTATTGGCCTAGTTCGTGTTC
TTGGAGAGTTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGACATTA
AGCCGACTTCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAA
TATAGGGAAGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGG
CCATACCTTGTGCGACTCGGTGGCTATTATCCACTACCTGGAGGAAACTC
GACCTCAGCCAGCACTTCTGCCCCAGGATCCGGTTAAAAGAGCAAAGATC
CGTGAAATTGTGGAGCTCATTTGCTCGGGCATCCAGCCACTGCAAAATGT
ATCTGTCCTAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCACAAC
ACTGGATTTCTCGAGGATTTCAGGGTCTCGAAAAGGTTCTTTCCCATTCG
GCGGGCAAATTCTGTGTGGGAGATGAGCTCAGCATGGCTGATATTTGCCT
GGTACCTCAGGTGCGCAATGCCAGGAGATACAAAGCTGACCTGACCCCAT
ATCCCACCATAGTACGCTTGAATCAGGAACTACAAGAACTTGATGTCTTC
AAAGCCACTCATCCCAGTACCCAGCCAGATTGTCCACCTGAATTCGCAAA
AAAAGCAAGCTTTCTAGACC

BO06663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9362-PA 741 CG9362-RA 1..738 17..754 3665 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ1-RA 913 CG9362-RA 102..839 17..754 3675 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9455781..9456112 627..296 1645 99.7 Minus
3R 32079331 3R 9456166..9456445 296..17 1400 100 Minus
3R 32079331 3R 9455591..9455719 754..626 645 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:20:51 has no hits.

BO06663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:05 Download gff for BO06663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9362-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:03 Download gff for BO06663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9362-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:05 Download gff for BO06663.5prime
Subject Subject Range Query Range Percent Splice Strand
GstZ1-RA 97..842 9..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:52 Download gff for BO06663.5prime
Subject Subject Range Query Range Percent Splice Strand
GstZ1-RA 97..842 9..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:52 Download gff for BO06663.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9455588..9455717 628..758 98 <- Minus
3R 9455781..9456111 297..627 99 <- Minus
3R 9456166..9456450 9..296 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:05 Download gff for BO06663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5281310..5281439 628..758 98 <- Minus
arm_3R 5281503..5281833 297..627 99 <- Minus
arm_3R 5281888..5282172 9..296 98   Minus

BO06663.complete Sequence

772 bp (772 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630483

> BO06663.complete
GAAGTTATCAGTCGACATGGCTTCTGCTACCCAATTGACCCACAGAGGTA
TCCATTTGGCCGGACTGTACAGATCTTCTTGGTCTAAGCCCTTGTTCCGA
CATTTGGCAACAAAGCCTATACTGTATTCCTATTGGCCTAGTTCGTGTTC
TTGGAGAGTTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGACATTA
AGCCGACTTCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAA
TATAGGGAAGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGG
CCATACCTTGTGCGACTCGGTGGCTATTATCCACTACCTGGAGGAAACTC
GACCTCAGCCAGCACTTCTGCCCCAGGATCCGGTTAAAAGAGCAAAGATC
CGTGAAATTGTGGAGCTCATTTGCTCGGGCATCCAGCCACTGCAAAATGT
ATCTGTCCTAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCACAAC
ACTGGATTTCTCGAGGATTTCAGGGTCTCGAAAAGGTTCTTTCCCATTCG
GCGGGCAAATTCTGTGTGGGAGATGAGCTCAGCATGGCTGATATTTGCCT
GGTACCTCAGGTGCGCAATGCCAGGAGATACAAAGCTGACCTGACCCCAT
ATCCCACCATAGTACGCTTGAATCAGGAACTACAAGAACTTGATGTCTTC
AAAGCCACTCATCCCAGTACCCAGCCAGATTGTCCACCTGAATTCGCAAA
AAAAGCAAGCTTTCTAGACCAT

BO06663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ1-RA 741 CG9362-PA 1..738 17..754 3675 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ1-RA 913 CG9362-RA 102..839 17..754 3675 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9455781..9456112 627..296 1645 99.7 Minus
3R 32079331 3R 9456166..9456445 296..17 1400 100 Minus
3R 32079331 3R 9455591..9455719 754..626 645 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:28:28 has no hits.

BO06663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:01 Download gff for BO06663.complete
Subject Subject Range Query Range Percent Splice Strand
CG9362-RA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:33 Download gff for BO06663.complete
Subject Subject Range Query Range Percent Splice Strand
CG9362-RA 93..838 9..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:07 Download gff for BO06663.complete
Subject Subject Range Query Range Percent Splice Strand
GstZ1-RA 102..832 17..747 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:01 Download gff for BO06663.complete
Subject Subject Range Query Range Percent Splice Strand
CG9362-RA 93..838 9..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:49 Download gff for BO06663.complete
Subject Subject Range Query Range Percent Splice Strand
GstZ1-RA 102..832 17..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:49 Download gff for BO06663.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9455781..9456111 297..627 99 <- Minus
3R 9456166..9456445 17..296 100   Minus
3R 9455598..9455717 628..747 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:07 Download gff for BO06663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5281888..5282167 17..296 100   Minus
arm_3R 5281320..5281439 628..747 100 <- Minus
arm_3R 5281503..5281833 297..627 99 <- Minus

BO06663.pep Sequence

Translation from 16 to 772

> BO06663.pep
MASATQLTHRGIHLAGLYRSSWSKPLFRHLATKPILYSYWPSSCSWRVRV
ALAIKKIDYDIKPTSLLKTVSGHAYTDEYREVNPMQKVPSLKIDGHTLCD
SVAIIHYLEETRPQPALLPQDPVKRAKIREIVELICSGIQPLQNVSVLDH
IGKDQSLQWAQHWISRGFQGLEKVLSHSAGKFCVGDELSMADICLVPQVR
NARRYKADLTPYPTIVRLNQELQELDVFKATHPSTQPDCPPEFAKKASFL
DH

BO06663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ1-PA 246 CG9362-PA 1..246 1..246 1305 100 Plus
GstZ2-PB 220 CG9363-PB 8..220 33..246 794 67.3 Plus
GstZ2-PA 227 CG9363-PA 15..227 33..246 790 66.8 Plus
GstZ2-PC 215 CG9363-PC 4..215 34..246 789 67.1 Plus
GstE6-PA 222 CG17530-PA 3..199 33..229 151 29.4 Plus