Clone Sequence Records
BO06664.3prime Sequence
894 bp (892 high quality bases) assembled on 2005-12-03
> BO06664.3prime
ATGGTCTAGAAAGCTTGCCGACTTTGTAAAAATTTGGATCGGTCGCTTGA
ATCCTACTTTGCAGTGCTCCGGTATGCCCATAAGTTTCATTTCGGCAAAG
CCCACTTCCGGGCTAAGCAGATATTCGGTGAAATGATCAGGTCGGAATTT
AATTGCATTGTAGTTATCTCTTATTTGTTCCGATAGCTTCTTGCGCCTCT
TGTAGCCGTCGAAGGACTGAGGTTCCAGGATCAGCTTGCCGCCCGGGCGC
AGCTGCAGGTACATGCGTCTGAAGGCCTGCTTCAGGCCGGAATCACAGAA
ATTAAGGTGGATCCACTTAGTGACAGACAGGCAGAGTATGACGTCGAACT
GCGGCCGTTCAATTTCGAGCAGGACGTCGTCCTCCAGGACGTAGTTCCCG
TGCACAAACTGTATGTGGGGTATCCCCTGCCCCGGGGTTGCGTGACGTTT
CAGGTGACTGACGGTTTTTTGGGCATCATTTATTAGCCCCCGATCTATGT
CCAGGCCCACGAGGCTCTTAACCTCGAATTTCCTGGCAATCTGGATGGAC
AGGTGGCCAGAGTTGCAGCCGATGTCAAGCAGCTGCTTGTTCCGAAACAA
ATCCGGTTGCGTGCCAAGCACGTCCAGGCGTATGTCGTGAAAATCCTTGT
TCAGGATGCGCTTGCCGTAGTAGTGCTTATAGTTGCCGTACTTGAAGTTA
AGGTCCTTGTTTTGCATGGGCTTTCCGTTTAGATGGAGCCGTTTTTTGGG
ACTCTGCGCAGGCGGACGGCTTGTGGCCTCCACATTTGATTCCTCCTTTT
TCAGTCTTTTGGATTCCACTTGCTTTTCATCTAATGTTATTACACATTTT
CGCTTTTTCGCACATTTTTCGGCTTGTTTGCCCGGTCATGGCGT
BO06664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-PA | 903 | CG1239-RA | 37..900 | 882..19 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 1052 | CG1239-RC | 138..1013 | 894..19 | 4335 | 99.8 | Minus |
CG1239-RB | 1058 | CG1239-RB | 144..1019 | 894..19 | 4335 | 99.8 | Minus |
CG1239-RA | 1051 | CG1239-RA | 137..1012 | 894..19 | 4335 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5733731..5734433 | 882..180 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 5734501..5734663 | 181..19 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:29:24 has no hits.
BO06664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:06 Download gff for
BO06664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 25..903 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:04 Download gff for
BO06664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 25..903 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:53 Download gff for
BO06664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 137..1012 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:11:45 Download gff for
BO06664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 137..1012 | 19..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:11:45 Download gff for
BO06664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5733719..5734432 | 181..894 | 99 | -> | Minus |
3R | 5734502..5734663 | 19..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:53 Download gff for
BO06664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1559441..1560154 | 181..894 | 99 | -> | Minus |
arm_3R | 1560224..1560385 | 19..180 | 100 | | Minus |
BO06664.5prime Sequence
879 bp (828 high quality bases) assembled on 2005-12-03
> BO06664.5prime
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAA
CTTATGGGCATACCGGAGCACTGCAAAGT
BO06664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-PA | 903 | CG1239-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 1052 | CG1239-RC | 114..976 | 17..879 | 4315 | 100 | Plus |
CG1239-RB | 1058 | CG1239-RB | 120..982 | 17..879 | 4315 | 100 | Plus |
CG1239-RA | 1051 | CG1239-RA | 113..975 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5733695..5734433 | 17..755 | 3695 | 100 | Plus |
3R | 32079331 | 3R | 5734501..5734626 | 754..879 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:18:18 has no hits.
BO06664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:07 Download gff for
BO06664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:05 Download gff for
BO06664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:54 Download gff for
BO06664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 108..975 | 8..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:21 Download gff for
BO06664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 108..975 | 8..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:21 Download gff for
BO06664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5733690..5734432 | 8..754 | 99 | -> | Plus |
3R | 5734502..5734626 | 755..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:54 Download gff for
BO06664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1559412..1560154 | 8..754 | 99 | -> | Plus |
arm_3R | 1560224..1560348 | 755..879 | 100 | | Plus |
BO06664.complete Sequence
934 bp (934 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630484
> BO06664.complete
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAA
CTTATGGGCATACCGGAGCACTGCAAAGTAGGATTCAAGCGACCGATCCA
AATTTTTACAAAGTCGGCAAGCTTTCTAGACCAT
BO06664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 903 | CG1239-PC | 1..900 | 17..916 | 4500 | 100 | Plus |
CG1239-RB | 903 | CG1239-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG1239-RA | 903 | CG1239-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 1052 | CG1239-RC | 114..1013 | 17..916 | 4500 | 100 | Plus |
CG1239-RB | 1058 | CG1239-RB | 120..1019 | 17..916 | 4500 | 100 | Plus |
CG1239-RA | 1051 | CG1239-RA | 113..1012 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5733695..5734433 | 17..755 | 3695 | 100 | Plus |
3R | 32079331 | 3R | 5734501..5734663 | 754..916 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:54:43 has no hits.
BO06664.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:02 Download gff for
BO06664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 1..903 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:35 Download gff for
BO06664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 80..984 | 8..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:41 Download gff for
BO06664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 113..1012 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:03 Download gff for
BO06664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 80..984 | 8..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:34 Download gff for
BO06664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 113..1012 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:34 Download gff for
BO06664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5733695..5734432 | 17..754 | 100 | -> | Plus |
3R | 5734502..5734663 | 755..918 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:41 Download gff for
BO06664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1559417..1560154 | 17..754 | 100 | -> | Plus |
arm_3R | 1560224..1560385 | 755..918 | 98 | | Plus |
BO06664.pep Sequence
Translation from 16 to 934
> BO06664.pep
MDLENNNNTPLTGKQAEKCAKKRKCVITLDEKQVESKRLKKEESNVEATS
RPPAQSPKKRLHLNGKPMQNKDLNFKYGNYKHYYGKRILNKDFHDIRLDV
LGTQPDLFRNKQLLDIGCNSGHLSIQIARKFEVKSLVGLDIDRGLINDAQ
KTVSHLKRHATPGQGIPHIQFVHGNYVLEDDVLLEIERPQFDVILCLSVT
KWIHLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGYKRRKKLSEQIR
DNYNAIKFRPDHFTEYLLSPEVGFAEMKLMGIPEHCKVGFKRPIQIFTKS
ASFLDH
BO06664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-PC | 300 | CG1239-PC | 1..300 | 1..300 | 1589 | 100 | Plus |
CG1239-PB | 300 | CG1239-PB | 1..300 | 1..300 | 1589 | 100 | Plus |
CG1239-PA | 300 | CG1239-PA | 1..300 | 1..300 | 1589 | 100 | Plus |
bin3-PD | 1367 | CG8276-PD | 981..1112 | 168..299 | 399 | 56.1 | Plus |
bin3-PA | 1367 | CG8276-PA | 981..1112 | 168..299 | 399 | 56.1 | Plus |
bin3-PD | 1367 | CG8276-PD | 785..865 | 73..154 | 195 | 45.1 | Plus |