Clone BO06664 Report

Search the DGRC for BO06664

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG1239-RA
Protein status:BO06664.pep: validated full length
Sequenced Size:934

Clone Sequence Records

BO06664.3prime Sequence

894 bp (892 high quality bases) assembled on 2005-12-03

> BO06664.3prime
ATGGTCTAGAAAGCTTGCCGACTTTGTAAAAATTTGGATCGGTCGCTTGA
ATCCTACTTTGCAGTGCTCCGGTATGCCCATAAGTTTCATTTCGGCAAAG
CCCACTTCCGGGCTAAGCAGATATTCGGTGAAATGATCAGGTCGGAATTT
AATTGCATTGTAGTTATCTCTTATTTGTTCCGATAGCTTCTTGCGCCTCT
TGTAGCCGTCGAAGGACTGAGGTTCCAGGATCAGCTTGCCGCCCGGGCGC
AGCTGCAGGTACATGCGTCTGAAGGCCTGCTTCAGGCCGGAATCACAGAA
ATTAAGGTGGATCCACTTAGTGACAGACAGGCAGAGTATGACGTCGAACT
GCGGCCGTTCAATTTCGAGCAGGACGTCGTCCTCCAGGACGTAGTTCCCG
TGCACAAACTGTATGTGGGGTATCCCCTGCCCCGGGGTTGCGTGACGTTT
CAGGTGACTGACGGTTTTTTGGGCATCATTTATTAGCCCCCGATCTATGT
CCAGGCCCACGAGGCTCTTAACCTCGAATTTCCTGGCAATCTGGATGGAC
AGGTGGCCAGAGTTGCAGCCGATGTCAAGCAGCTGCTTGTTCCGAAACAA
ATCCGGTTGCGTGCCAAGCACGTCCAGGCGTATGTCGTGAAAATCCTTGT
TCAGGATGCGCTTGCCGTAGTAGTGCTTATAGTTGCCGTACTTGAAGTTA
AGGTCCTTGTTTTGCATGGGCTTTCCGTTTAGATGGAGCCGTTTTTTGGG
ACTCTGCGCAGGCGGACGGCTTGTGGCCTCCACATTTGATTCCTCCTTTT
TCAGTCTTTTGGATTCCACTTGCTTTTCATCTAATGTTATTACACATTTT
CGCTTTTTCGCACATTTTTCGGCTTGTTTGCCCGGTCATGGCGT

BO06664.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-PA 903 CG1239-RA 37..900 882..19 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 1052 CG1239-RC 138..1013 894..19 4335 99.8 Minus
CG1239-RB 1058 CG1239-RB 144..1019 894..19 4335 99.8 Minus
CG1239-RA 1051 CG1239-RA 137..1012 894..19 4335 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5733731..5734433 882..180 3515 100 Minus
3R 32079331 3R 5734501..5734663 181..19 815 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:29:24 has no hits.

BO06664.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:06 Download gff for BO06664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 25..903 18..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:04 Download gff for BO06664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 25..903 18..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:53 Download gff for BO06664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 137..1012 19..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:11:45 Download gff for BO06664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 137..1012 19..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:11:45 Download gff for BO06664.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5733719..5734432 181..894 99 -> Minus
3R 5734502..5734663 19..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:53 Download gff for BO06664.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1559441..1560154 181..894 99 -> Minus
arm_3R 1560224..1560385 19..180 100   Minus

BO06664.5prime Sequence

879 bp (828 high quality bases) assembled on 2005-12-03

> BO06664.5prime
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAA
CTTATGGGCATACCGGAGCACTGCAAAGT

BO06664.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-PA 903 CG1239-RA 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 1052 CG1239-RC 114..976 17..879 4315 100 Plus
CG1239-RB 1058 CG1239-RB 120..982 17..879 4315 100 Plus
CG1239-RA 1051 CG1239-RA 113..975 17..879 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5733695..5734433 17..755 3695 100 Plus
3R 32079331 3R 5734501..5734626 754..879 630 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:18:18 has no hits.

BO06664.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:07 Download gff for BO06664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:05 Download gff for BO06664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 1..863 17..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:54 Download gff for BO06664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 108..975 8..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:21 Download gff for BO06664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 108..975 8..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:21 Download gff for BO06664.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5733690..5734432 8..754 99 -> Plus
3R 5734502..5734626 755..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:54 Download gff for BO06664.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1559412..1560154 8..754 99 -> Plus
arm_3R 1560224..1560348 755..879 100   Plus

BO06664.complete Sequence

934 bp (934 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630484

> BO06664.complete
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAA
CTTATGGGCATACCGGAGCACTGCAAAGTAGGATTCAAGCGACCGATCCA
AATTTTTACAAAGTCGGCAAGCTTTCTAGACCAT

BO06664.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 903 CG1239-PC 1..900 17..916 4500 100 Plus
CG1239-RB 903 CG1239-PB 1..900 17..916 4500 100 Plus
CG1239-RA 903 CG1239-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 1052 CG1239-RC 114..1013 17..916 4500 100 Plus
CG1239-RB 1058 CG1239-RB 120..1019 17..916 4500 100 Plus
CG1239-RA 1051 CG1239-RA 113..1012 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5733695..5734433 17..755 3695 100 Plus
3R 32079331 3R 5734501..5734663 754..916 815 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:54:43 has no hits.

BO06664.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:02 Download gff for BO06664.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 1..903 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:35 Download gff for BO06664.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 80..984 8..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:41 Download gff for BO06664.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 113..1012 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:03 Download gff for BO06664.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 80..984 8..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:34 Download gff for BO06664.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 113..1012 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:34 Download gff for BO06664.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5733695..5734432 17..754 100 -> Plus
3R 5734502..5734663 755..918 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:41 Download gff for BO06664.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1559417..1560154 17..754 100 -> Plus
arm_3R 1560224..1560385 755..918 98   Plus

BO06664.pep Sequence

Translation from 16 to 934

> BO06664.pep
MDLENNNNTPLTGKQAEKCAKKRKCVITLDEKQVESKRLKKEESNVEATS
RPPAQSPKKRLHLNGKPMQNKDLNFKYGNYKHYYGKRILNKDFHDIRLDV
LGTQPDLFRNKQLLDIGCNSGHLSIQIARKFEVKSLVGLDIDRGLINDAQ
KTVSHLKRHATPGQGIPHIQFVHGNYVLEDDVLLEIERPQFDVILCLSVT
KWIHLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGYKRRKKLSEQIR
DNYNAIKFRPDHFTEYLLSPEVGFAEMKLMGIPEHCKVGFKRPIQIFTKS
ASFLDH

BO06664.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-PC 300 CG1239-PC 1..300 1..300 1589 100 Plus
CG1239-PB 300 CG1239-PB 1..300 1..300 1589 100 Plus
CG1239-PA 300 CG1239-PA 1..300 1..300 1589 100 Plus
bin3-PD 1367 CG8276-PD 981..1112 168..299 399 56.1 Plus
bin3-PA 1367 CG8276-PA 981..1112 168..299 399 56.1 Plus
bin3-PD 1367 CG8276-PD 785..865 73..154 195 45.1 Plus