Clone Sequence Records
BO06666.3prime Sequence
638 bp (637 high quality bases) assembled on 2005-12-03
> BO06666.3prime
ATGGTCTAGAAAGCTTGCTTTGGATGAGTAAGTGGATTCGGTCTTCTTGA
TATTGAGAACGCCGTTGGAATCGGTGGCACCCTGGATGTTGGTCACCTTC
TGGTTGCCACTGGCATCGACAACGGCCACGGTCTGCTGGATTTGGGTGGC
GGGAATGGGTCCAACTCCGGAGATGTGCTGATAGCTACCGGTGCTTCCTA
CTCCGCTGTTGCTGCTGATGGAGGCTGCGCTGGTGTAGCCATTGTAGGTG
GGATAATAGTTGTCGCCTCCAGTTAAGGAGCTCTCGCCGAAACGCTCATC
AAAGGACACACCACCAAGCACTGGAGCAGCGGCCTGCTGGGTGTAAGAGG
AGCCAGAATGACCGGAGCCATCGGCATTCTGAACGCTGTGTGAGGCGTAG
GTGAAGACGTTTCCTCCACTGGAGGACGAGGAGGATGATGACGAGGAAGA
CGAACTGGACTGACGACGCAGACGCCTCAGGAGATGGGCATTCACGGGAT
GGACATTCGACTGGTGGCCCTCCGAGTCCAAGGTGAAGAAGGCACGGGGC
AGAAACTGGCCAGCGGAAGAGGCCGAAGCGGTAGTAATCGCAAACAAAGC
GATGGCAATCACAGCGTACTTCATGTCGACTGATAACT
BO06666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10200-PB | 609 | CG10200-RB | 1..606 | 624..19 | 3030 | 100 | Minus |
CG10200-PA | 609 | CG10200-RA | 1..606 | 624..19 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 821 | CG10200-RA | 165..770 | 624..19 | 3030 | 100 | Minus |
hui-RB | 734 | CG10200-RB | 78..683 | 624..19 | 3030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14809585..14809880 | 314..19 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 14809273..14809523 | 564..314 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 14808583..14808643 | 624..564 | 305 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 19:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 251..203 | 119 | 71.4 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 251..203 | 119 | 71.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 266..205 | 111 | 68.3 | Minus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2169..2269 | 413..520 | 108 | 61.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 250..172 | 106 | 62.5 | Minus |
BO06666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:10 Download gff for
BO06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 18..624 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:09 Download gff for
BO06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 18..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:26 Download gff for
BO06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RB | 73..683 | 19..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:27 Download gff for
BO06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hui-RB | 73..683 | 19..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:27 Download gff for
BO06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14808578..14808643 | 564..633 | 94 | -> | Minus |
2R | 14809274..14809523 | 314..563 | 100 | -> | Minus |
2R | 14809586..14809880 | 19..313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:26 Download gff for
BO06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10696083..10696148 | 564..633 | 94 | -> | Minus |
arm_2R | 10696779..10697028 | 314..563 | 100 | -> | Minus |
arm_2R | 10697091..10697385 | 19..313 | 100 | | Minus |
BO06666.5prime Sequence
638 bp (637 high quality bases) assembled on 2005-12-03
> BO06666.5prime
GAAGTTATCAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTG
CGATTACTACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCC
TTCTTCACCTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAA
TGCCCATCTCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGT
CATCATCCTCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCA
CACAGCGTTCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACAC
CCAGCAGGCCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTT
TCGGCGAGAGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAAT
GGCTACACCAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCAC
CGGTAGCTATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAA
TCCAGCAGACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACC
AACATCCAGGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGAC
CGAATCCACTTACTCATCCAAAGCAAGCTTTCTAGACC
BO06666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10200-PB | 609 | CG10200-RB | 1..606 | 17..622 | 3030 | 100 | Plus |
CG10200-PA | 609 | CG10200-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 821 | CG10200-RA | 165..770 | 17..622 | 3030 | 100 | Plus |
hui-RB | 734 | CG10200-RB | 78..683 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14809585..14809880 | 327..622 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 14809273..14809523 | 77..327 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 14808583..14808643 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 390..438 | 119 | 71.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 390..438 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 375..436 | 111 | 68.3 | Plus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2169..2269 | 228..121 | 108 | 61.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 391..469 | 106 | 62.5 | Plus |
BO06666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:11 Download gff for
BO06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:11 Download gff for
BO06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-PA | 1..609 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:01:49 Download gff for
BO06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RB | 73..683 | 8..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:57 Download gff for
BO06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hui-RB | 73..683 | 8..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:57 Download gff for
BO06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14808578..14808643 | 8..77 | 94 | -> | Plus |
2R | 14809274..14809523 | 78..327 | 100 | -> | Plus |
2R | 14809586..14809880 | 328..622 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:01:49 Download gff for
BO06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10696083..10696148 | 8..77 | 94 | -> | Plus |
arm_2R | 10696779..10697028 | 78..327 | 100 | -> | Plus |
arm_2R | 10697091..10697385 | 328..622 | 100 | | Plus |
BO06666.complete Sequence
640 bp (640 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630485
> BO06666.complete
GAAGTTATCAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTG
CGATTACTACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCC
TTCTTCACCTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAA
TGCCCATCTCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGT
CATCATCCTCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCA
CACAGCGTTCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACAC
CCAGCAGGCCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTT
TCGGCGAGAGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAAT
GGCTACACCAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCAC
CGGTAGCTATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAA
TCCAGCAGACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACC
AACATCCAGGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGAC
CGAATCCACTTACTCATCCAAAGCAAGCTTTCTAGACCAT
BO06666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 609 | CG10200-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
hui-RB | 609 | CG10200-PB | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-RA | 821 | CG10200-RA | 165..770 | 17..622 | 3030 | 100 | Plus |
hui-RB | 734 | CG10200-RB | 78..683 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14809585..14809880 | 327..622 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 14809273..14809523 | 77..327 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 14808583..14808643 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 390..438 | 119 | 71.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 390..438 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 375..436 | 111 | 68.3 | Plus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2169..2269 | 228..121 | 108 | 61.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 391..469 | 106 | 62.5 | Plus |
BO06666.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:29 Download gff for
BO06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RA | 1..609 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:21 Download gff for
BO06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RA | 130..740 | 8..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:01 Download gff for
BO06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RB | 78..683 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:29 Download gff for
BO06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10200-RA | 130..740 | 8..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:24 Download gff for
BO06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hui-RB | 78..683 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:24 Download gff for
BO06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14809586..14809880 | 328..624 | 99 | | Plus |
2R | 14808583..14808643 | 17..77 | 100 | -> | Plus |
2R | 14809274..14809523 | 78..327 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:01 Download gff for
BO06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10696088..10696148 | 17..77 | 100 | -> | Plus |
arm_2R | 10696779..10697028 | 78..327 | 100 | -> | Plus |
arm_2R | 10697091..10697385 | 328..624 | 99 | | Plus |
BO06666.pep Sequence
Translation from 16 to 640
> BO06666.pep
MKYAVIAIALFAITTASASSAGQFLPRAFFTLDSEGHQSNVHPVNAHLLR
RLRRQSSSSSSSSSSSSSSGGNVFTYASHSVQNADGSGHSGSSYTQQAAA
PVLGGVSFDERFGESSLTGGDNYYPTYNGYTSAASISSNSGVGSTGSYQH
ISGVGPIPATQIQQTVAVVDASGNQKVTNIQGATDSNGVLNIKKTESTYS
SKASFLDH
BO06666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hui-PA | 202 | CG10200-PA | 1..202 | 1..202 | 1010 | 100 | Plus |
hui-PB | 202 | CG10200-PB | 1..202 | 1..202 | 1010 | 100 | Plus |