Clone BO06667 Report

Search the DGRC for BO06667

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG2147-RA
Protein status:BO06667.pep: validated full length
Sequenced Size:529

Clone Sequence Records

BO06667.5prime Sequence

527 bp (526 high quality bases) assembled on 2005-12-03

> BO06667.5prime
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAAGCAAGCTTTCTAGACC

BO06667.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-PA 498 CG2147-RA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 746 CG2147-RA 86..581 16..511 2480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8240938..8241318 131..511 1905 100 Plus
X 23542271 X 8240769..8240885 16..132 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:02:03 has no hits.

BO06667.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:12 Download gff for BO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 17..512 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:14 Download gff for BO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:21 Download gff for BO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..585 10..517 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:25 Download gff for BO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..585 10..517 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:25 Download gff for BO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8240763..8240884 10..131 97 -> Plus
X 8240939..8241322 132..517 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:21 Download gff for BO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8134796..8134917 10..131 97 -> Plus
arm_X 8134972..8135355 132..517 99   Plus

BO06667.3prime Sequence

527 bp (526 high quality bases) assembled on 2005-12-03

> BO06667.3prime
ATGGTCTAGAAAGCTTGCTTTGGTTCTTGGTGGAACCTTGGCCACCCTGG
AGGGATCGATGCTGATGCTGTGGGCCAACGGTGGCAGGCGCACGGCATTG
GCATTTGGTCCCGCTCCGAAACCGCCCACATCCGCTCCACCGGCCGGTGG
ATTGTTGGGATCCGGATATGGAATCTGGCGCTGGGGTGTTACCAGGGCCA
CGGGACGCGGCGAGATTGAATCTTGTGCTGTAGGTATTGATAGTTGTGGC
TGAACCAGCTGGACACTAGAGGACTTCCCGTCCAGCGGGTGGGCCACGCG
CTTGCGAAGATCTAGGCGTGGACGACTATTGTTTAATTTGCAGCTCTGAG
AATCCGCCGAAATGGGTGGCGGGTCATTCCAGCCGGGAGTCAGGGATCCA
GGAAACGCTCCCGATGGAGCTATGATTTGCCCCGTTGGCGGTGGCGGTGG
AACGCTTGCCACCTGCTGTGGGTTAATACTATTGGTGGCACGAAGCGGCG
GTGTTGGATCCATGTCGACTGATAACT

BO06667.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-PA 498 CG2147-RA 1..495 513..19 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 746 CG2147-RA 86..581 514..19 2480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8240938..8241318 399..19 1905 100 Minus
X 23542271 X 8240769..8240885 514..398 585 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:06:02 has no hits.

BO06667.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:11 Download gff for BO06667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 18..513 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:12 Download gff for BO06667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-PA 1..498 18..513 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:32 Download gff for BO06667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..585 13..520 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:02 Download gff for BO06667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..585 13..520 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:02 Download gff for BO06667.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8240763..8240884 399..520 97 -> Minus
X 8240939..8241322 13..398 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:32 Download gff for BO06667.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8134796..8134917 399..520 97 -> Minus
arm_X 8134972..8135355 13..398 99   Minus

BO06667.complete Sequence

529 bp (529 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ638643

> BO06667.complete
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAAGCAAGCTTTCTAGACCAT

BO06667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 498 CG2147-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-RA 746 CG2147-RA 86..581 16..511 2480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8240938..8241318 131..511 1905 100 Plus
X 23542271 X 8240769..8240885 16..132 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:54:29 has no hits.

BO06667.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:06 Download gff for BO06667.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 1..498 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:22 Download gff for BO06667.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..585 10..517 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:18 Download gff for BO06667.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 87..581 17..513 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:06 Download gff for BO06667.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 80..585 10..517 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:54 Download gff for BO06667.complete
Subject Subject Range Query Range Percent Splice Strand
CG2147-RA 87..581 17..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:54 Download gff for BO06667.complete
Subject Subject Range Query Range Percent Splice Strand
X 8240770..8240884 17..131 100 -> Plus
X 8240939..8241318 132..513 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:18 Download gff for BO06667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8134803..8134917 17..131 100 -> Plus
arm_X 8134972..8135351 132..513 99   Plus

BO06667.pep Sequence

Translation from 16 to 529

> BO06667.pep
MDPTPPLRATNSINPQQVASVPPPPPTGQIIAPSGAFPGSLTPGWNDPPP
ISADSQSCKLNNSRPRLDLRKRVAHPLDGKSSSVQLVQPQLSIPTAQDSI
SPRPVALVTPQRQIPYPDPNNPPAGGADVGGFGAGPNANAVRLPPLAHSI
SIDPSRVAKVPPRTKASFLDH

BO06667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2147-PA 165 CG2147-PA 1..165 1..165 877 100 Plus