Clone Sequence Records
BO06667.5prime Sequence
527 bp (526 high quality bases) assembled on 2005-12-03
> BO06667.5prime
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAAGCAAGCTTTCTAGACC
BO06667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-PA | 498 | CG2147-RA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 746 | CG2147-RA | 86..581 | 16..511 | 2480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8240938..8241318 | 131..511 | 1905 | 100 | Plus |
X | 23542271 | X | 8240769..8240885 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:02:03 has no hits.
BO06667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:12 Download gff for
BO06667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:14 Download gff for
BO06667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:21 Download gff for
BO06667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..585 | 10..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:25 Download gff for
BO06667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..585 | 10..517 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:25 Download gff for
BO06667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8240763..8240884 | 10..131 | 97 | -> | Plus |
X | 8240939..8241322 | 132..517 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:21 Download gff for
BO06667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8134796..8134917 | 10..131 | 97 | -> | Plus |
arm_X | 8134972..8135355 | 132..517 | 99 | | Plus |
BO06667.3prime Sequence
527 bp (526 high quality bases) assembled on 2005-12-03
> BO06667.3prime
ATGGTCTAGAAAGCTTGCTTTGGTTCTTGGTGGAACCTTGGCCACCCTGG
AGGGATCGATGCTGATGCTGTGGGCCAACGGTGGCAGGCGCACGGCATTG
GCATTTGGTCCCGCTCCGAAACCGCCCACATCCGCTCCACCGGCCGGTGG
ATTGTTGGGATCCGGATATGGAATCTGGCGCTGGGGTGTTACCAGGGCCA
CGGGACGCGGCGAGATTGAATCTTGTGCTGTAGGTATTGATAGTTGTGGC
TGAACCAGCTGGACACTAGAGGACTTCCCGTCCAGCGGGTGGGCCACGCG
CTTGCGAAGATCTAGGCGTGGACGACTATTGTTTAATTTGCAGCTCTGAG
AATCCGCCGAAATGGGTGGCGGGTCATTCCAGCCGGGAGTCAGGGATCCA
GGAAACGCTCCCGATGGAGCTATGATTTGCCCCGTTGGCGGTGGCGGTGG
AACGCTTGCCACCTGCTGTGGGTTAATACTATTGGTGGCACGAAGCGGCG
GTGTTGGATCCATGTCGACTGATAACT
BO06667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-PA | 498 | CG2147-RA | 1..495 | 513..19 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 746 | CG2147-RA | 86..581 | 514..19 | 2480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8240938..8241318 | 399..19 | 1905 | 100 | Minus |
X | 23542271 | X | 8240769..8240885 | 514..398 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:06:02 has no hits.
BO06667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:11 Download gff for
BO06667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 18..513 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:12 Download gff for
BO06667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-PA | 1..498 | 18..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:32 Download gff for
BO06667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..585 | 13..520 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:02 Download gff for
BO06667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..585 | 13..520 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:02 Download gff for
BO06667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8240763..8240884 | 399..520 | 97 | -> | Minus |
X | 8240939..8241322 | 13..398 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:32 Download gff for
BO06667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8134796..8134917 | 399..520 | 97 | -> | Minus |
arm_X | 8134972..8135355 | 13..398 | 99 | | Minus |
BO06667.complete Sequence
529 bp (529 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ638643
> BO06667.complete
GAAGTTATCAGTCGACATGGATCCAACACCGCCGCTTCGTGCCACCAATA
GTATTAACCCACAGCAGGTGGCAAGCGTTCCACCGCCACCGCCAACGGGG
CAAATCATAGCTCCATCGGGAGCGTTTCCTGGATCCCTGACTCCCGGCTG
GAATGACCCGCCACCCATTTCGGCGGATTCTCAGAGCTGCAAATTAAACA
ATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGTGGCCCACCCGCTGGAC
GGGAAGTCCTCTAGTGTCCAGCTGGTTCAGCCACAACTATCAATACCTAC
AGCACAAGATTCAATCTCGCCGCGTCCCGTGGCCCTGGTAACACCCCAGC
GCCAGATTCCATATCCGGATCCCAACAATCCACCGGCCGGTGGAGCGGAT
GTGGGCGGTTTCGGAGCGGGACCAAATGCCAATGCCGTGCGCCTGCCACC
GTTGGCCCACAGCATCAGCATCGATCCCTCCAGGGTGGCCAAGGTTCCAC
CAAGAACCAAAGCAAGCTTTCTAGACCAT
BO06667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 498 | CG2147-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-RA | 746 | CG2147-RA | 86..581 | 16..511 | 2480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8240938..8241318 | 131..511 | 1905 | 100 | Plus |
X | 23542271 | X | 8240769..8240885 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:54:29 has no hits.
BO06667.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:06 Download gff for
BO06667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:22 Download gff for
BO06667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..585 | 10..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:18 Download gff for
BO06667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 87..581 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:06 Download gff for
BO06667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 80..585 | 10..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:54 Download gff for
BO06667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2147-RA | 87..581 | 17..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:54 Download gff for
BO06667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8240770..8240884 | 17..131 | 100 | -> | Plus |
X | 8240939..8241318 | 132..513 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:18 Download gff for
BO06667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8134803..8134917 | 17..131 | 100 | -> | Plus |
arm_X | 8134972..8135351 | 132..513 | 99 | | Plus |
BO06667.pep Sequence
Translation from 16 to 529
> BO06667.pep
MDPTPPLRATNSINPQQVASVPPPPPTGQIIAPSGAFPGSLTPGWNDPPP
ISADSQSCKLNNSRPRLDLRKRVAHPLDGKSSSVQLVQPQLSIPTAQDSI
SPRPVALVTPQRQIPYPDPNNPPAGGADVGGFGAGPNANAVRLPPLAHSI
SIDPSRVAKVPPRTKASFLDH
BO06667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2147-PA | 165 | CG2147-PA | 1..165 | 1..165 | 877 | 100 | Plus |