Clone Sequence Records
BO06672.5prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-03
> BO06672.5prime
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACGCAA
GCTTTCTAGACC
BO06672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14206-PB | 483 | RpS10b-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG14206-PC | 483 | RpS10b-RC | 1..480 | 17..496 | 2400 | 100 | Plus |
CG12275-PA | 492 | RpS10a-RA | 20..77 | 36..93 | 215 | 94.8 | Plus |
CG12275-PA | 492 | RpS10a-RA | 169..234 | 185..250 | 155 | 89.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 809 | CG14206-RD | 168..647 | 17..496 | 2400 | 100 | Plus |
RpS10b-RC | 1469 | CG14206-RC | 97..576 | 17..496 | 2400 | 100 | Plus |
RpS10b-RB | 743 | CG14206-RB | 102..581 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19598434..19598913 | 17..496 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 27652836..27653104 | 17..285 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:17:59 has no hits.
BO06672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:22 Download gff for
BO06672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:26 Download gff for
BO06672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:28 Download gff for
BO06672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..584 | 7..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:28 Download gff for
BO06672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..584 | 7..500 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:28 Download gff for
BO06672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19598433..19598916 | 15..500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:28 Download gff for
BO06672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19492466..19492949 | 15..500 | 99 | | Plus |
BO06672.3prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-03
> BO06672.3prime
ATGGTCTAGAAAGCTTGCGTTGCGCGATCCGCGTCCGAATCCGCCACGGA
ACTCGACCTCTCCGGCACCGGGTCCAACATCGCCCTTCTTGTCCACTCCG
CTGCCGCCGGGAGCACGTCGGTAGGCGGAGCGATCCTCTCCGGTCTTGGA
GGCGTCACCGGGTCCGCGTGGGCCGCCAACGGCGGGACGGGGACGGACGG
TCTCCGAGCGGGCAGGGCGCTTCAGCGTCGAGGGCACGATCTCGGGCGGC
AGGTGGAGGTAGCTGCGCAGCTCCTCGATTCCCTCGTTGGTGAGGTACCA
GTAGTAGTGGCGCCAGGCGAACTGCTCCTTAACCAGTCCGCGCGAGTGGA
GCGACTGCATCGCCTTGATCACGTGCAAGTTGGGGATCGACTCCAGTTCC
GGGTGCTTCTGGGCATGGAAATCCTTCTTGGCCACGATCACGCCCTCCTT
GAAGAGGTACTCGTAGATCGCGACACGATGGGCCTTTGGCATAAACATGT
CGACTGATAACT
BO06672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14206-PB | 483 | RpS10b-RB | 1..480 | 498..19 | 2400 | 100 | Minus |
CG14206-PC | 483 | RpS10b-RC | 1..480 | 498..19 | 2400 | 100 | Minus |
CG12275-PA | 492 | RpS10a-RA | 20..77 | 479..422 | 215 | 94.8 | Minus |
CG12275-PA | 492 | RpS10a-RA | 169..234 | 330..265 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 809 | CG14206-RD | 168..647 | 498..19 | 2400 | 100 | Minus |
RpS10b-RC | 1469 | CG14206-RC | 97..576 | 498..19 | 2400 | 100 | Minus |
RpS10b-RB | 743 | CG14206-RB | 102..581 | 498..19 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19598434..19598913 | 498..19 | 2400 | 100 | Minus |
3R | 32079331 | 3R | 27652836..27653104 | 498..230 | 640 | 82.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:17:19 has no hits.
BO06672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:21 Download gff for
BO06672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:24 Download gff for
BO06672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14206-PC | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:36 Download gff for
BO06672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..584 | 15..508 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:35 Download gff for
BO06672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..584 | 15..508 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:35 Download gff for
BO06672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19598433..19598916 | 15..500 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:36 Download gff for
BO06672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19492466..19492949 | 15..500 | 99 | | Minus |
BO06672.complete Sequence
514 bp (514 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630486
> BO06672.complete
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACGCAA
GCTTTCTAGACCAT
BO06672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 483 | CG14206-PD | 1..480 | 17..496 | 2400 | 100 | Plus |
RpS10b-RC | 483 | CG14206-PC | 1..480 | 17..496 | 2400 | 100 | Plus |
RpS10b-RB | 483 | CG14206-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-RD | 809 | CG14206-RD | 168..647 | 17..496 | 2400 | 100 | Plus |
RpS10b-RC | 1469 | CG14206-RC | 97..576 | 17..496 | 2400 | 100 | Plus |
RpS10b-RB | 743 | CG14206-RB | 102..581 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19598434..19598913 | 17..496 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 27652836..27653104 | 17..285 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:20:42 has no hits.
BO06672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:44 Download gff for
BO06672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RC | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:38 Download gff for
BO06672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..584 | 7..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:36 Download gff for
BO06672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 108..581 | 23..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:44 Download gff for
BO06672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 91..584 | 7..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:42 Download gff for
BO06672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS10b-RB | 108..581 | 23..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:42 Download gff for
BO06672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19598440..19598913 | 23..498 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:36 Download gff for
BO06672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19492473..19492946 | 23..498 | 99 | | Plus |
BO06672.pep Sequence
Translation from 16 to 514
> BO06672.pep
MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSL
HSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSET
VRPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGVDKKGDVGPGAGEVEF
RGGFGRGSRNASFLDH
BO06672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS10b-PD | 160 | CG14206-PD | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10b-PC | 160 | CG14206-PC | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10b-PB | 160 | CG14206-PB | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10b-PE | 160 | CG14206-PE | 1..160 | 1..160 | 857 | 100 | Plus |
RpS10a-PA | 163 | CG12275-PA | 1..160 | 1..159 | 611 | 74.4 | Plus |