Clone BO06672 Report

Search the DGRC for BO06672

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptRpS10b-RB
Protein status:BO06672.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO06672.5prime Sequence

512 bp (511 high quality bases) assembled on 2005-12-03

> BO06672.5prime
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACGCAA
GCTTTCTAGACC

BO06672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14206-PB 483 RpS10b-RB 1..480 17..496 2400 100 Plus
CG14206-PC 483 RpS10b-RC 1..480 17..496 2400 100 Plus
CG12275-PA 492 RpS10a-RA 20..77 36..93 215 94.8 Plus
CG12275-PA 492 RpS10a-RA 169..234 185..250 155 89.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 809 CG14206-RD 168..647 17..496 2400 100 Plus
RpS10b-RC 1469 CG14206-RC 97..576 17..496 2400 100 Plus
RpS10b-RB 743 CG14206-RB 102..581 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19598434..19598913 17..496 2400 100 Plus
3R 32079331 3R 27652836..27653104 17..285 640 82.5 Plus
Blast to na_te.dros performed on 2015-02-09 19:17:59 has no hits.

BO06672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:22 Download gff for BO06672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 17..500 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:26 Download gff for BO06672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:28 Download gff for BO06672.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..584 7..500 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:28 Download gff for BO06672.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..584 7..500 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:28 Download gff for BO06672.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19598433..19598916 15..500 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:28 Download gff for BO06672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19492466..19492949 15..500 99   Plus

BO06672.3prime Sequence

512 bp (511 high quality bases) assembled on 2005-12-03

> BO06672.3prime
ATGGTCTAGAAAGCTTGCGTTGCGCGATCCGCGTCCGAATCCGCCACGGA
ACTCGACCTCTCCGGCACCGGGTCCAACATCGCCCTTCTTGTCCACTCCG
CTGCCGCCGGGAGCACGTCGGTAGGCGGAGCGATCCTCTCCGGTCTTGGA
GGCGTCACCGGGTCCGCGTGGGCCGCCAACGGCGGGACGGGGACGGACGG
TCTCCGAGCGGGCAGGGCGCTTCAGCGTCGAGGGCACGATCTCGGGCGGC
AGGTGGAGGTAGCTGCGCAGCTCCTCGATTCCCTCGTTGGTGAGGTACCA
GTAGTAGTGGCGCCAGGCGAACTGCTCCTTAACCAGTCCGCGCGAGTGGA
GCGACTGCATCGCCTTGATCACGTGCAAGTTGGGGATCGACTCCAGTTCC
GGGTGCTTCTGGGCATGGAAATCCTTCTTGGCCACGATCACGCCCTCCTT
GAAGAGGTACTCGTAGATCGCGACACGATGGGCCTTTGGCATAAACATGT
CGACTGATAACT

BO06672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14206-PB 483 RpS10b-RB 1..480 498..19 2400 100 Minus
CG14206-PC 483 RpS10b-RC 1..480 498..19 2400 100 Minus
CG12275-PA 492 RpS10a-RA 20..77 479..422 215 94.8 Minus
CG12275-PA 492 RpS10a-RA 169..234 330..265 155 89.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 809 CG14206-RD 168..647 498..19 2400 100 Minus
RpS10b-RC 1469 CG14206-RC 97..576 498..19 2400 100 Minus
RpS10b-RB 743 CG14206-RB 102..581 498..19 2400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19598434..19598913 498..19 2400 100 Minus
3R 32079331 3R 27652836..27653104 498..230 640 82.5 Minus
Blast to na_te.dros performed on 2015-02-11 03:17:19 has no hits.

BO06672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:21 Download gff for BO06672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 15..498 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:24 Download gff for BO06672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14206-PC 1..483 15..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:36 Download gff for BO06672.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..584 15..508 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:35 Download gff for BO06672.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..584 15..508 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:35 Download gff for BO06672.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19598433..19598916 15..500 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:36 Download gff for BO06672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19492466..19492949 15..500 99   Minus

BO06672.complete Sequence

514 bp (514 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630486

> BO06672.complete
GAAGTTATCAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCT
ACGAGTACCTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCAT
GCCCAGAAGCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAA
GGCGATGCAGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCT
GGCGCCACTACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGC
AGCTACCTCCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCC
TGCCCGCTCGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCG
GACCCGGTGACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGT
GCTCCCGGCGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGC
CGGAGAGGTCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACGCAA
GCTTTCTAGACCAT

BO06672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 483 CG14206-PD 1..480 17..496 2400 100 Plus
RpS10b-RC 483 CG14206-PC 1..480 17..496 2400 100 Plus
RpS10b-RB 483 CG14206-PB 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-RD 809 CG14206-RD 168..647 17..496 2400 100 Plus
RpS10b-RC 1469 CG14206-RC 97..576 17..496 2400 100 Plus
RpS10b-RB 743 CG14206-RB 102..581 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19598434..19598913 17..496 2400 100 Plus
3R 32079331 3R 27652836..27653104 17..285 640 82.5 Plus
Blast to na_te.dros performed on 2014-11-27 07:20:42 has no hits.

BO06672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:44 Download gff for BO06672.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RC 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:38 Download gff for BO06672.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..584 7..500 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:36 Download gff for BO06672.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 108..581 23..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:44 Download gff for BO06672.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 91..584 7..500 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:42 Download gff for BO06672.complete
Subject Subject Range Query Range Percent Splice Strand
RpS10b-RB 108..581 23..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:42 Download gff for BO06672.complete
Subject Subject Range Query Range Percent Splice Strand
X 19598440..19598913 23..498 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:36 Download gff for BO06672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19492473..19492946 23..498 99   Plus

BO06672.pep Sequence

Translation from 16 to 514

> BO06672.pep
MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSL
HSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSET
VRPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGVDKKGDVGPGAGEVEF
RGGFGRGSRNASFLDH

BO06672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpS10b-PD 160 CG14206-PD 1..160 1..160 857 100 Plus
RpS10b-PC 160 CG14206-PC 1..160 1..160 857 100 Plus
RpS10b-PB 160 CG14206-PB 1..160 1..160 857 100 Plus
RpS10b-PE 160 CG14206-PE 1..160 1..160 857 100 Plus
RpS10a-PA 163 CG12275-PA 1..160 1..159 611 74.4 Plus