Clone BO06675 Report

Search the DGRC for BO06675

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptppl-RA
Protein status:BO06675.pep: validated full length
Sequenced Size:529

Clone Sequence Records

BO06675.3prime Sequence

527 bp (526 high quality bases) assembled on 2005-12-03

> BO06675.3prime
ATGGTCTAGAAAGCTTGCGTGATCCCCACTGCTGCTCAGGAAGGCTTTGT
ACTGATCCTCGGTCATAAGGGCTTCGAGTTCCTTGGGATTCTTCAGGTCC
ACCTTGAAAAGCCAGCCCTTCTCATAGCAACTGCTGTTGACTAGGGCCGG
TGTGTCCTCCACCTCGGCATTCTTTTCAATTACCTTGCCACTAACGGGTG
AATACACCTCGCTAGCCGCTTTAACGCTCTCCAGGGCCCCACATTCGTCA
TCCTGCTTGAGTTCCGTGCCGGGTTCTGGGAGTTGGGCGAACACCACATC
CCCGAGAGCCTCCTGGGCGTAGCTGGAGATGCCTACTATGGCATTGCTGC
CGGATACCACCTCCACCCACTCGTGTTTGTTTGTGTATCGGCGTTCTTTG
GCTAGAAGGCTTGTCAGGTGAATGGCGCGAGCCTGGACGGCGCCAAGGGG
CGTGACACTAAGCTGGCGGGCGGCCTGCAGCCCAATCCTTGCGAATTTCG
TTATGAATACCATGTCGACTGATAACT

BO06675.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7758-PA 498 ppl-RA 1..495 513..19 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 900 CG7758-RA 205..699 513..19 2475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21280850..21281131 116..397 1410 100 Plus
3L 28110227 3L 21281185..21281302 396..513 590 100 Plus
3L 28110227 3L 21280692..21280790 19..117 495 100 Plus
Blast to na_te.dros performed 2015-02-13 16:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2135..2182 420..373 105 68.8 Minus
TART-A 13424 TART-A 13424bp 2702..2749 420..373 105 68.8 Minus
TART-C 11124 TART-C TARTC 11124bp 1379..1426 420..373 105 68.8 Minus

BO06675.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:56:24 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:30 Download gff for BO06675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7758-PA 1..498 18..513 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:46 Download gff for BO06675.3prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..699 19..513 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:47 Download gff for BO06675.3prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..699 19..513 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:47 Download gff for BO06675.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21280692..21280789 19..116 100 <- Plus
3L 21280851..21281129 117..395 100 <- Plus
3L 21281185..21281302 396..513 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:46 Download gff for BO06675.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21273792..21273889 19..116 100 <- Plus
arm_3L 21273951..21274229 117..395 100 <- Plus
arm_3L 21274285..21274402 396..513 100   Plus

BO06675.5prime Sequence

527 bp (526 high quality bases) assembled on 2005-12-03

> BO06675.5prime
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACGCAAGCTTTCTAGACC

BO06675.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7758-PA 498 ppl-RA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 900 CG7758-RA 205..699 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21280850..21281131 414..133 1410 100 Minus
3L 28110227 3L 21281185..21281302 134..17 590 100 Minus
3L 28110227 3L 21280692..21280790 511..413 495 100 Minus
Blast to na_te.dros performed 2015-02-11 05:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2135..2182 110..157 105 68.8 Plus
TART-A 13424 TART-A 13424bp 2702..2749 110..157 105 68.8 Plus
TART-C 11124 TART-C TARTC 11124bp 1379..1426 110..157 105 68.8 Plus

BO06675.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:56:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:31 Download gff for BO06675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7758-PA 1..498 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:33 Download gff for BO06675.5prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..699 17..511 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:15 Download gff for BO06675.5prime
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..699 17..511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:15 Download gff for BO06675.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21280851..21281129 135..413 100 <- Minus
3L 21281185..21281302 17..134 100   Minus
3L 21280692..21280789 414..511 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:33 Download gff for BO06675.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21273792..21273889 414..511 100 <- Minus
arm_3L 21273951..21274229 135..413 100 <- Minus
arm_3L 21274285..21274402 17..134 100   Minus

BO06675.complete Sequence

529 bp (529 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ638644

> BO06675.complete
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACGCAAGCTTTCTAGACCAT

BO06675.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 498 CG7758-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-RA 900 CG7758-RA 205..699 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21280850..21281131 414..133 1410 100 Minus
3L 28110227 3L 21281185..21281302 134..17 590 100 Minus
3L 28110227 3L 21280692..21280790 511..413 495 100 Minus
Blast to na_te.dros performed 2014-11-27 20:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2135..2182 110..157 105 68.8 Plus
TART-A 13424 TART-A 13424bp 2702..2749 110..157 105 68.8 Plus
TART-C 11124 TART-C TARTC 11124bp 1379..1426 110..157 105 68.8 Plus

BO06675.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:26 Download gff for BO06675.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 1..498 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:54 Download gff for BO06675.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 200..694 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:25 Download gff for BO06675.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..699 17..513 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:26 Download gff for BO06675.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 200..694 17..511 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:16 Download gff for BO06675.complete
Subject Subject Range Query Range Percent Splice Strand
ppl-RA 205..699 17..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:16 Download gff for BO06675.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21280690..21280789 414..513 98 <- Minus
3L 21280851..21281129 135..413 100 <- Minus
3L 21281185..21281302 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:25 Download gff for BO06675.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21273790..21273889 414..513 98 <- Minus
arm_3L 21273951..21274229 135..413 100 <- Minus
arm_3L 21274285..21274402 17..134 100   Minus

BO06675.pep Sequence

Translation from 16 to 529

> BO06675.pep
MVFITKFARIGLQAARQLSVTPLGAVQARAIHLTSLLAKERRYTNKHEWV
EVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAA
SEVYSPVSGKVIEKNAEVEDTPALVNSSCYEKGWLFKVDLKNPKELEALM
TEDQYKAFLSSSGDHASFLDH

BO06675.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
ppl-PA 165 CG7758-PA 1..165 1..165 832 100 Plus