Clone Sequence Records
BO06675.3prime Sequence
527 bp (526 high quality bases) assembled on 2005-12-03
> BO06675.3prime
ATGGTCTAGAAAGCTTGCGTGATCCCCACTGCTGCTCAGGAAGGCTTTGT
ACTGATCCTCGGTCATAAGGGCTTCGAGTTCCTTGGGATTCTTCAGGTCC
ACCTTGAAAAGCCAGCCCTTCTCATAGCAACTGCTGTTGACTAGGGCCGG
TGTGTCCTCCACCTCGGCATTCTTTTCAATTACCTTGCCACTAACGGGTG
AATACACCTCGCTAGCCGCTTTAACGCTCTCCAGGGCCCCACATTCGTCA
TCCTGCTTGAGTTCCGTGCCGGGTTCTGGGAGTTGGGCGAACACCACATC
CCCGAGAGCCTCCTGGGCGTAGCTGGAGATGCCTACTATGGCATTGCTGC
CGGATACCACCTCCACCCACTCGTGTTTGTTTGTGTATCGGCGTTCTTTG
GCTAGAAGGCTTGTCAGGTGAATGGCGCGAGCCTGGACGGCGCCAAGGGG
CGTGACACTAAGCTGGCGGGCGGCCTGCAGCCCAATCCTTGCGAATTTCG
TTATGAATACCATGTCGACTGATAACT
BO06675.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7758-PA | 498 | ppl-RA | 1..495 | 513..19 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 900 | CG7758-RA | 205..699 | 513..19 | 2475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21280850..21281131 | 116..397 | 1410 | 100 | Plus |
3L | 28110227 | 3L | 21281185..21281302 | 396..513 | 590 | 100 | Plus |
3L | 28110227 | 3L | 21280692..21280790 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 16:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2135..2182 | 420..373 | 105 | 68.8 | Minus |
TART-A | 13424 | TART-A 13424bp | 2702..2749 | 420..373 | 105 | 68.8 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 1379..1426 | 420..373 | 105 | 68.8 | Minus |
BO06675.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:56:24 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:30 Download gff for
BO06675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7758-PA | 1..498 | 18..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:46 Download gff for
BO06675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..699 | 19..513 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:47 Download gff for
BO06675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..699 | 19..513 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:47 Download gff for
BO06675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21280692..21280789 | 19..116 | 100 | <- | Plus |
3L | 21280851..21281129 | 117..395 | 100 | <- | Plus |
3L | 21281185..21281302 | 396..513 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:46 Download gff for
BO06675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21273792..21273889 | 19..116 | 100 | <- | Plus |
arm_3L | 21273951..21274229 | 117..395 | 100 | <- | Plus |
arm_3L | 21274285..21274402 | 396..513 | 100 | | Plus |
BO06675.5prime Sequence
527 bp (526 high quality bases) assembled on 2005-12-03
> BO06675.5prime
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACGCAAGCTTTCTAGACC
BO06675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7758-PA | 498 | ppl-RA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 900 | CG7758-RA | 205..699 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21280850..21281131 | 414..133 | 1410 | 100 | Minus |
3L | 28110227 | 3L | 21281185..21281302 | 134..17 | 590 | 100 | Minus |
3L | 28110227 | 3L | 21280692..21280790 | 511..413 | 495 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 05:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2135..2182 | 110..157 | 105 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 2702..2749 | 110..157 | 105 | 68.8 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 1379..1426 | 110..157 | 105 | 68.8 | Plus |
BO06675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:56:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:31 Download gff for
BO06675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7758-PA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:33 Download gff for
BO06675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..699 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:15 Download gff for
BO06675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..699 | 17..511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:15 Download gff for
BO06675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21280851..21281129 | 135..413 | 100 | <- | Minus |
3L | 21281185..21281302 | 17..134 | 100 | | Minus |
3L | 21280692..21280789 | 414..511 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:33 Download gff for
BO06675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21273792..21273889 | 414..511 | 100 | <- | Minus |
arm_3L | 21273951..21274229 | 135..413 | 100 | <- | Minus |
arm_3L | 21274285..21274402 | 17..134 | 100 | | Minus |
BO06675.complete Sequence
529 bp (529 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ638644
> BO06675.complete
GAAGTTATCAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGC
TGCAGGCCGCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCT
CGCGCCATTCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAA
CAAACACGAGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCA
TCTCCAGCTACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTC
CCAGAACCCGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGA
GAGCGTTAAAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAA
TTGAAAAGAATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGT
TGCTATGAGAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGA
ACTCGAAGCCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCA
GTGGGGATCACGCAAGCTTTCTAGACCAT
BO06675.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 498 | CG7758-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-RA | 900 | CG7758-RA | 205..699 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21280850..21281131 | 414..133 | 1410 | 100 | Minus |
3L | 28110227 | 3L | 21281185..21281302 | 134..17 | 590 | 100 | Minus |
3L | 28110227 | 3L | 21280692..21280790 | 511..413 | 495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2135..2182 | 110..157 | 105 | 68.8 | Plus |
TART-A | 13424 | TART-A 13424bp | 2702..2749 | 110..157 | 105 | 68.8 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 1379..1426 | 110..157 | 105 | 68.8 | Plus |
BO06675.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:26 Download gff for
BO06675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:54 Download gff for
BO06675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 200..694 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:25 Download gff for
BO06675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..699 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:26 Download gff for
BO06675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 200..694 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:16 Download gff for
BO06675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppl-RA | 205..699 | 17..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:16 Download gff for
BO06675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21280690..21280789 | 414..513 | 98 | <- | Minus |
3L | 21280851..21281129 | 135..413 | 100 | <- | Minus |
3L | 21281185..21281302 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:25 Download gff for
BO06675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21273790..21273889 | 414..513 | 98 | <- | Minus |
arm_3L | 21273951..21274229 | 135..413 | 100 | <- | Minus |
arm_3L | 21274285..21274402 | 17..134 | 100 | | Minus |
BO06675.pep Sequence
Translation from 16 to 529
> BO06675.pep
MVFITKFARIGLQAARQLSVTPLGAVQARAIHLTSLLAKERRYTNKHEWV
EVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAA
SEVYSPVSGKVIEKNAEVEDTPALVNSSCYEKGWLFKVDLKNPKELEALM
TEDQYKAFLSSSGDHASFLDH
BO06675.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ppl-PA | 165 | CG7758-PA | 1..165 | 1..165 | 832 | 100 | Plus |