Clone Sequence Records
BO06676.3prime Sequence
916 bp (748 high quality bases) assembled on 2005-12-03
> BO06676.3prime
ATGGTCTAGAAAGCTTGCGGCCCAGGGATCGGCGGAGGGATCGCAATCAA
CGACAATCGGATCGTCCTCGCTCTCACCGTCGCTGCTGGCCAGGATCAGG
TCCACGACGGTCCAGAAGTCCTTGCCCTTCAGCATCTTGTTCACTCGCGG
CACGATGGCGTTCTCAATGGTCTCGGAAATGGCGTCCTGGTTGCCATTGA
TTCCCTTTACCACGATGTTCTCCAGCTGGCTGTTGATGGCGCGGTTGATC
TTGCCGTTGCCCATGAATCCAGTGATGTCCGAAGTCACAGACTCCAACGA
GATGGTGGTCTTCAGCGAGGTGATCTTGGCGGAACCCCACAGCATGGGAA
GCTTGTACTTCAGAGTGCCAGCAATACGCAGGTTGACCAAATCGAACAAC
AGCTCTCCGGATCCCTCGTACTCCACGGACAGACCCAACTGGCGCAGGGC
ATCGATCAGCGTATCAGTGTCGTACTTCTGGGCGGTGGTATCGATGTTCT
TGAACAGAAAATCGAAGGTAATCTTGCTGGTGATCACGTTCAGCTTGAAC
TTCTGGATATTGAAGTCATTCAGACCGGCGATCTTCAGGCGGAACACATG
GTTCAAGGTCTCGAAAATGCCCTTTTTGTAGTCTAGGTCGAATTCGTTGA
TGCGAAGAGGAGCCAGCACGGGAATGCCATACTGGGGCCATCCGCACTCC
ATCTGCTTCTGGAGCTTGCGGATGAAGCGACGCGCCTGCCAGGACACAAT
AAACTGGGGGGCAACTTCAACTCCCTCCTGGGGCTCCGCGACCAGATCGA
TGTCACCATTCTGATCCGCCAGCTCCAACAGACGCTGCTCCACCTCGTTG
GGCAGAGTGCCGGCGGCACAAACGGCCACCAGGCAAGCTAAGACTACCAG
GGAACGCATGTCGACT
BO06676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-PA | 894 | CG7953-RA | 1..891 | 909..19 | 4405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 1154 | CG7953-RB | 37..928 | 910..19 | 4430 | 99.8 | Minus |
CG7953-RA | 1092 | CG7953-RA | 37..928 | 910..19 | 4430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13848250..13848997 | 766..19 | 3740 | 100 | Minus |
2L | 23513712 | 2L | 13847961..13848106 | 910..765 | 700 | 98.6 | Minus |
Blast to na_te.dros performed 2015-02-13 12:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 816..852 | 115 | 83.8 | Plus |
BO06676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:26 Download gff for
BO06676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..894 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:32 Download gff for
BO06676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..894 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:16 Download gff for
BO06676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 30..934 | 12..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:42 Download gff for
BO06676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 30..934 | 12..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:42 Download gff for
BO06676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13847954..13848106 | 765..916 | 96 | -> | Minus |
2L | 13848252..13849001 | 15..764 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:16 Download gff for
BO06676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13847954..13848106 | 765..916 | 96 | -> | Minus |
arm_2L | 13848252..13849001 | 15..764 | 99 | <- | Minus |
BO06676.5prime Sequence
873 bp (834 high quality bases) assembled on 2005-12-03
> BO06676.5prime
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGG
GCAAGGACTTCTGGACCGTCGTGGACCTGATCCTGGGCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGT
BO06676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-PA | 894 | CG7953-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 1154 | CG7953-RB | 37..894 | 16..873 | 4275 | 99.9 | Plus |
CG7953-RA | 1092 | CG7953-RA | 37..894 | 16..873 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13848250..13848963 | 160..873 | 3555 | 99.9 | Plus |
2L | 23513712 | 2L | 13847961..13848106 | 16..161 | 730 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 110..74 | 115 | 83.8 | Minus |
BO06676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:27 Download gff for
BO06676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:34 Download gff for
BO06676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:19 Download gff for
BO06676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 23..894 | 2..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:05 Download gff for
BO06676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 23..894 | 2..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:05 Download gff for
BO06676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13847947..13848106 | 2..161 | 96 | -> | Plus |
2L | 13848252..13848963 | 162..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:19 Download gff for
BO06676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13847947..13848106 | 2..161 | 96 | -> | Plus |
arm_2L | 13848252..13848963 | 162..873 | 99 | | Plus |
BO06676.complete Sequence
925 bp (925 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630487
> BO06676.complete
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGG
GCAAGGACTTCTGGACCGTCGTGGACCTGATCCTGGCCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGTCGTTGATTGCGATCCCTCCGCCGATCC
CTGGGCCGCAAGCTTTCTAGACCAT
BO06676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 894 | CG7953-PB | 1..891 | 17..907 | 4455 | 100 | Plus |
CG7953-RA | 894 | CG7953-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-RB | 1154 | CG7953-RB | 37..928 | 16..907 | 4460 | 100 | Plus |
CG7953-RA | 1092 | CG7953-RA | 37..928 | 16..907 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13848250..13848997 | 160..907 | 3740 | 100 | Plus |
2L | 23513712 | 2L | 13847961..13848106 | 16..161 | 730 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 110..74 | 115 | 83.8 | Minus |
BO06676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:46 Download gff for
BO06676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:14 Download gff for
BO06676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 5..916 | 2..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:39 Download gff for
BO06676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 38..928 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:46 Download gff for
BO06676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 5..916 | 2..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:59 Download gff for
BO06676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7953-RA | 38..928 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:59 Download gff for
BO06676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13847962..13848106 | 17..161 | 100 | -> | Plus |
2L | 13848252..13848997 | 162..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:39 Download gff for
BO06676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13847962..13848106 | 17..161 | 100 | -> | Plus |
arm_2L | 13848252..13848997 | 162..909 | 99 | | Plus |
BO06676.pep Sequence
Translation from 16 to 925
> BO06676.pep
MRFLVVLACLVAVCAAGTLPNEVEQRLLELADQNGDIDLVAEPQEGVEVA
PQFIVSWQARRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFE
TLNHVFRLKIAGLNDFNIQKFKLNVITSKITFDFLFKNIDTTAQKYDTDT
LIDALRQLGLSVEYEGSGELLFDLVNLRIAGTLKYKLPMLWGSAKITSLK
TTISLESVTSDITGFMGNGKINRAINSQLENIVVKGINGNQDAISETIEN
AIVPRVNKMLKGKDFWTVVDLILASSDGESEDDPIVVDCDPSADPWAASF
LDH
BO06676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7953-PB | 297 | CG7953-PB | 1..297 | 1..297 | 1521 | 100 | Plus |
CG7953-PA | 297 | CG7953-PA | 1..297 | 1..297 | 1521 | 100 | Plus |
CG7916-PA | 287 | CG7916-PA | 19..280 | 36..298 | 437 | 36.4 | Plus |
CG8997-PB | 260 | CG8997-PB | 36..260 | 63..296 | 356 | 34.5 | Plus |
CG8997-PA | 260 | CG8997-PA | 36..260 | 63..296 | 356 | 34.5 | Plus |