Clone BO06676 Report

Search the DGRC for BO06676

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG7953-RA
Protein status:BO06676.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO06676.3prime Sequence

916 bp (748 high quality bases) assembled on 2005-12-03

> BO06676.3prime
ATGGTCTAGAAAGCTTGCGGCCCAGGGATCGGCGGAGGGATCGCAATCAA
CGACAATCGGATCGTCCTCGCTCTCACCGTCGCTGCTGGCCAGGATCAGG
TCCACGACGGTCCAGAAGTCCTTGCCCTTCAGCATCTTGTTCACTCGCGG
CACGATGGCGTTCTCAATGGTCTCGGAAATGGCGTCCTGGTTGCCATTGA
TTCCCTTTACCACGATGTTCTCCAGCTGGCTGTTGATGGCGCGGTTGATC
TTGCCGTTGCCCATGAATCCAGTGATGTCCGAAGTCACAGACTCCAACGA
GATGGTGGTCTTCAGCGAGGTGATCTTGGCGGAACCCCACAGCATGGGAA
GCTTGTACTTCAGAGTGCCAGCAATACGCAGGTTGACCAAATCGAACAAC
AGCTCTCCGGATCCCTCGTACTCCACGGACAGACCCAACTGGCGCAGGGC
ATCGATCAGCGTATCAGTGTCGTACTTCTGGGCGGTGGTATCGATGTTCT
TGAACAGAAAATCGAAGGTAATCTTGCTGGTGATCACGTTCAGCTTGAAC
TTCTGGATATTGAAGTCATTCAGACCGGCGATCTTCAGGCGGAACACATG
GTTCAAGGTCTCGAAAATGCCCTTTTTGTAGTCTAGGTCGAATTCGTTGA
TGCGAAGAGGAGCCAGCACGGGAATGCCATACTGGGGCCATCCGCACTCC
ATCTGCTTCTGGAGCTTGCGGATGAAGCGACGCGCCTGCCAGGACACAAT
AAACTGGGGGGCAACTTCAACTCCCTCCTGGGGCTCCGCGACCAGATCGA
TGTCACCATTCTGATCCGCCAGCTCCAACAGACGCTGCTCCACCTCGTTG
GGCAGAGTGCCGGCGGCACAAACGGCCACCAGGCAAGCTAAGACTACCAG
GGAACGCATGTCGACT

BO06676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-PA 894 CG7953-RA 1..891 909..19 4405 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 1154 CG7953-RB 37..928 910..19 4430 99.8 Minus
CG7953-RA 1092 CG7953-RA 37..928 910..19 4430 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13848250..13848997 766..19 3740 100 Minus
2L 23513712 2L 13847961..13848106 910..765 700 98.6 Minus
Blast to na_te.dros performed 2015-02-13 12:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1518..1551 816..852 115 83.8 Plus

BO06676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:26 Download gff for BO06676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..894 15..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:32 Download gff for BO06676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..894 15..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:16 Download gff for BO06676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 30..934 12..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:42 Download gff for BO06676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 30..934 12..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:42 Download gff for BO06676.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13847954..13848106 765..916 96 -> Minus
2L 13848252..13849001 15..764 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:16 Download gff for BO06676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13847954..13848106 765..916 96 -> Minus
arm_2L 13848252..13849001 15..764 99 <- Minus

BO06676.5prime Sequence

873 bp (834 high quality bases) assembled on 2005-12-03

> BO06676.5prime
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGG
GCAAGGACTTCTGGACCGTCGTGGACCTGATCCTGGGCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGT

BO06676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-PA 894 CG7953-RA 1..857 17..873 4260 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 1154 CG7953-RB 37..894 16..873 4275 99.9 Plus
CG7953-RA 1092 CG7953-RA 37..894 16..873 4275 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13848250..13848963 160..873 3555 99.9 Plus
2L 23513712 2L 13847961..13848106 16..161 730 100 Plus
Blast to na_te.dros performed 2015-02-11 16:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1518..1551 110..74 115 83.8 Minus

BO06676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:27 Download gff for BO06676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:34 Download gff for BO06676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:19 Download gff for BO06676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 23..894 2..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:05 Download gff for BO06676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 23..894 2..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:05 Download gff for BO06676.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13847947..13848106 2..161 96 -> Plus
2L 13848252..13848963 162..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:19 Download gff for BO06676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13847947..13848106 2..161 96 -> Plus
arm_2L 13848252..13848963 162..873 99   Plus

BO06676.complete Sequence

925 bp (925 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630487

> BO06676.complete
GAAGTTATCAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGG
CCGTTTGTGCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTG
GAGCTGGCGGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGA
GGGAGTTGAAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCT
TCATCCGCAAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGC
ATTCCCGTGCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAA
AAAGGGCATTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCG
GTCTGAATGACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGC
AAGATTACCTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAA
GTACGACACTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCG
TGGAGTACGAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGT
ATTGCTGGCACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAA
GATCACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACA
TCACTGGATTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAG
CTGGAGAACATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTC
CGAGACCATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGG
GCAAGGACTTCTGGACCGTCGTGGACCTGATCCTGGCCAGCAGCGACGGT
GAGAGCGAGGACGATCCGATTGTCGTTGATTGCGATCCCTCCGCCGATCC
CTGGGCCGCAAGCTTTCTAGACCAT

BO06676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 894 CG7953-PB 1..891 17..907 4455 100 Plus
CG7953-RA 894 CG7953-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-RB 1154 CG7953-RB 37..928 16..907 4460 100 Plus
CG7953-RA 1092 CG7953-RA 37..928 16..907 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13848250..13848997 160..907 3740 100 Plus
2L 23513712 2L 13847961..13848106 16..161 730 100 Plus
Blast to na_te.dros performed 2014-11-28 00:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1518..1551 110..74 115 83.8 Minus

BO06676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:46 Download gff for BO06676.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 1..894 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:14 Download gff for BO06676.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 5..916 2..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:39 Download gff for BO06676.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 38..928 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:46 Download gff for BO06676.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 5..916 2..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:59 Download gff for BO06676.complete
Subject Subject Range Query Range Percent Splice Strand
CG7953-RA 38..928 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:59 Download gff for BO06676.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13847962..13848106 17..161 100 -> Plus
2L 13848252..13848997 162..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:39 Download gff for BO06676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13847962..13848106 17..161 100 -> Plus
arm_2L 13848252..13848997 162..909 99   Plus

BO06676.pep Sequence

Translation from 16 to 925

> BO06676.pep
MRFLVVLACLVAVCAAGTLPNEVEQRLLELADQNGDIDLVAEPQEGVEVA
PQFIVSWQARRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFE
TLNHVFRLKIAGLNDFNIQKFKLNVITSKITFDFLFKNIDTTAQKYDTDT
LIDALRQLGLSVEYEGSGELLFDLVNLRIAGTLKYKLPMLWGSAKITSLK
TTISLESVTSDITGFMGNGKINRAINSQLENIVVKGINGNQDAISETIEN
AIVPRVNKMLKGKDFWTVVDLILASSDGESEDDPIVVDCDPSADPWAASF
LDH

BO06676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7953-PB 297 CG7953-PB 1..297 1..297 1521 100 Plus
CG7953-PA 297 CG7953-PA 1..297 1..297 1521 100 Plus
CG7916-PA 287 CG7916-PA 19..280 36..298 437 36.4 Plus
CG8997-PB 260 CG8997-PB 36..260 63..296 356 34.5 Plus
CG8997-PA 260 CG8997-PA 36..260 63..296 356 34.5 Plus