Clone Sequence Records
BO06677.3prime Sequence
779 bp (778 high quality bases) assembled on 2005-12-03
> BO06677.3prime
ATGGTCTAGAAAGCTTGCGGCGATCTGCTCCTGGATCCAATCCGCGTAGC
TGGAGAGTCGGACAAAGACATCCGGATAGCGGGAGCCACAGGCGCCCACC
ACAAAGTTGGTCAGCCCGATCAACGTGTTGCCATAGATGGCACCACCGCC
TCCGTCTCCGTGGCAGGTGCCCTCCTTCAGCTCGTGGGCGAGGCAGAAGC
TCTGCTCGTCGTGATCGCTGTACGCATCCAGGCAGGTCGCCTCCGGGGCC
ACCTTTAGCGATATCTGACGGATCTTGTAGGAGTTGGTGCCGTCGCTGGT
GCGTCCCCAGCCGGCCACGATCACCTCCGATCCCTCGGCGGGCAGTGCCT
CTCCGCTGGCGACCAGCGGGATGGCAGTGATCCGATCGGTGTAGGTCAGC
TCAGAGCTCAGCGTGATCACGGCCAGGTTGTTGTTCAGATTATAGTAGTC
CGGATGCACTGCAACCGATTCCACGTTGACAATCTTGCCACCAGCATACT
GGTTGGTACTGCCCACGCGGCACGCCAGGCGACTGGCATCGATTAGCTTT
CCATCGCGATGCACACAGTGGGCGGTGGTCAGGATTTTGGTCTGGGAGAG
AATGCTACCGCCGCACACATGGGCATTGTCCACCCGCAAGGAGGCGGTGA
AGGTCGTGGCTGTGGCGTCCGCGTCCTCCCCTCCCATGATGCGTCCCTGG
GCGTGGCACATGCCCACCGCCGTCAATCCGATCAGACCCAAAATCACTAG
TCTCGGCTGCATCATGTCGACTGATAACT
BO06677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9675-PA | 750 | CG9675-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 1263 | CG9675-RA | 76..822 | 765..19 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16700887..16701412 | 19..544 | 2630 | 100 | Plus |
X | 23542271 | X | 16701677..16701897 | 545..765 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:39:15 has no hits.
BO06677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:28 Download gff for
BO06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:35 Download gff for
BO06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:22 Download gff for
BO06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..822 | 19..765 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:54 Download gff for
BO06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..822 | 19..765 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:54 Download gff for
BO06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16700887..16701412 | 19..544 | 100 | <- | Plus |
X | 16701677..16701897 | 545..765 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:22 Download gff for
BO06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16594920..16595445 | 19..544 | 100 | <- | Plus |
arm_X | 16595710..16595930 | 545..765 | 100 | | Plus |
BO06677.5prime Sequence
779 bp (761 high quality bases) assembled on 2005-12-03
> BO06677.5prime
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCGNCAGCTTTCTAGACC
BO06677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9675-PA | 750 | CG9675-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 1263 | CG9675-RA | 76..822 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16700887..16701412 | 763..238 | 2630 | 100 | Minus |
X | 23542271 | X | 16701677..16701897 | 237..17 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:06:10 has no hits.
BO06677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:29 Download gff for
BO06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:37 Download gff for
BO06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9675-PA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:35 Download gff for
BO06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..825 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:27 Download gff for
BO06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..825 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:27 Download gff for
BO06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16700884..16701412 | 238..768 | 99 | <- | Minus |
X | 16701677..16701897 | 17..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:35 Download gff for
BO06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16594917..16595445 | 238..768 | 99 | <- | Minus |
arm_X | 16595710..16595930 | 17..237 | 100 | | Minus |
BO06677.complete Sequence
781 bp (781 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630488
> BO06677.complete
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCGCAAGCTTTCTAGACCAT
BO06677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 750 | CG9675-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-RA | 1263 | CG9675-RA | 76..822 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16700887..16701412 | 763..238 | 2630 | 100 | Minus |
X | 23542271 | X | 16701677..16701897 | 237..17 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:40:08 has no hits.
BO06677.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:47 Download gff for
BO06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:16 Download gff for
BO06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 60..806 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:15 Download gff for
BO06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..822 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:47 Download gff for
BO06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 60..806 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:16 Download gff for
BO06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spheroide-RA | 76..822 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:16 Download gff for
BO06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16700885..16701412 | 238..765 | 99 | <- | Minus |
X | 16701677..16701897 | 17..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:15 Download gff for
BO06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16594918..16595445 | 238..765 | 99 | <- | Minus |
arm_X | 16595710..16595930 | 17..237 | 100 | | Minus |
BO06677.pep Sequence
Translation from 16 to 781
> BO06677.pep
MMQPRLVILGLIGLTAVGMCHAQGRIMGGEDADATATTFTASLRVDNAHV
CGGSILSQTKILTTAHCVHRDGKLIDASRLACRVGSTNQYAGGKIVNVES
VAVHPDYYNLNNNLAVITLSSELTYTDRITAIPLVASGEALPAEGSEVIV
AGWGRTSDGTNSYKIRQISLKVAPEATCLDAYSDHDEQSFCLAHELKEGT
CHGDGGGGAIYGNTLIGLTNFVVGACGSRYPDVFVRLSSYADWIQEQIAA
SFLDH
BO06677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spheroide-PA | 249 | CG9675-PA | 1..249 | 1..249 | 1296 | 100 | Plus |
CG9673-PB | 261 | CG9673-PB | 1..257 | 1..245 | 464 | 42.8 | Plus |
CG9673-PA | 261 | CG9673-PA | 1..257 | 1..245 | 464 | 42.8 | Plus |
Ser6-PA | 259 | CG2071-PA | 30..255 | 24..246 | 386 | 38 | Plus |
CG9672-PA | 253 | CG9672-PA | 7..251 | 9..248 | 384 | 37.2 | Plus |