Clone BO06677 Report

Search the DGRC for BO06677

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptspheroide-RA
Protein status:BO06677.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO06677.3prime Sequence

779 bp (778 high quality bases) assembled on 2005-12-03

> BO06677.3prime
ATGGTCTAGAAAGCTTGCGGCGATCTGCTCCTGGATCCAATCCGCGTAGC
TGGAGAGTCGGACAAAGACATCCGGATAGCGGGAGCCACAGGCGCCCACC
ACAAAGTTGGTCAGCCCGATCAACGTGTTGCCATAGATGGCACCACCGCC
TCCGTCTCCGTGGCAGGTGCCCTCCTTCAGCTCGTGGGCGAGGCAGAAGC
TCTGCTCGTCGTGATCGCTGTACGCATCCAGGCAGGTCGCCTCCGGGGCC
ACCTTTAGCGATATCTGACGGATCTTGTAGGAGTTGGTGCCGTCGCTGGT
GCGTCCCCAGCCGGCCACGATCACCTCCGATCCCTCGGCGGGCAGTGCCT
CTCCGCTGGCGACCAGCGGGATGGCAGTGATCCGATCGGTGTAGGTCAGC
TCAGAGCTCAGCGTGATCACGGCCAGGTTGTTGTTCAGATTATAGTAGTC
CGGATGCACTGCAACCGATTCCACGTTGACAATCTTGCCACCAGCATACT
GGTTGGTACTGCCCACGCGGCACGCCAGGCGACTGGCATCGATTAGCTTT
CCATCGCGATGCACACAGTGGGCGGTGGTCAGGATTTTGGTCTGGGAGAG
AATGCTACCGCCGCACACATGGGCATTGTCCACCCGCAAGGAGGCGGTGA
AGGTCGTGGCTGTGGCGTCCGCGTCCTCCCCTCCCATGATGCGTCCCTGG
GCGTGGCACATGCCCACCGCCGTCAATCCGATCAGACCCAAAATCACTAG
TCTCGGCTGCATCATGTCGACTGATAACT

BO06677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9675-PA 750 CG9675-RA 1..747 765..19 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 1263 CG9675-RA 76..822 765..19 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16700887..16701412 19..544 2630 100 Plus
X 23542271 X 16701677..16701897 545..765 1105 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:39:15 has no hits.

BO06677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:28 Download gff for BO06677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 18..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:35 Download gff for BO06677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 18..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:22 Download gff for BO06677.3prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..822 19..765 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:54 Download gff for BO06677.3prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..822 19..765 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:54 Download gff for BO06677.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16700887..16701412 19..544 100 <- Plus
X 16701677..16701897 545..765 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:22 Download gff for BO06677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16594920..16595445 19..544 100 <- Plus
arm_X 16595710..16595930 545..765 100   Plus

BO06677.5prime Sequence

779 bp (761 high quality bases) assembled on 2005-12-03

> BO06677.5prime
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCGNCAGCTTTCTAGACC

BO06677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9675-PA 750 CG9675-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 1263 CG9675-RA 76..822 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16700887..16701412 763..238 2630 100 Minus
X 23542271 X 16701677..16701897 237..17 1105 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:06:10 has no hits.

BO06677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:29 Download gff for BO06677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 17..764 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:37 Download gff for BO06677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9675-PA 1..750 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:35 Download gff for BO06677.5prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..825 17..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:27 Download gff for BO06677.5prime
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..825 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:27 Download gff for BO06677.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16700884..16701412 238..768 99 <- Minus
X 16701677..16701897 17..237 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:35 Download gff for BO06677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16594917..16595445 238..768 99 <- Minus
arm_X 16595710..16595930 17..237 100   Minus

BO06677.complete Sequence

781 bp (781 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630488

> BO06677.complete
GAAGTTATCAGTCGACATGATGCAGCCGAGACTAGTGATTTTGGGTCTGA
TCGGATTGACGGCGGTGGGCATGTGCCACGCCCAGGGACGCATCATGGGA
GGGGAGGACGCGGACGCCACAGCCACGACCTTCACCGCCTCCTTGCGGGT
GGACAATGCCCATGTGTGCGGCGGTAGCATTCTCTCCCAGACCAAAATCC
TGACCACCGCCCACTGTGTGCATCGCGATGGAAAGCTAATCGATGCCAGT
CGCCTGGCGTGCCGCGTGGGCAGTACCAACCAGTATGCTGGTGGCAAGAT
TGTCAACGTGGAATCGGTTGCAGTGCATCCGGACTACTATAATCTGAACA
ACAACCTGGCCGTGATCACGCTGAGCTCTGAGCTGACCTACACCGATCGG
ATCACTGCCATCCCGCTGGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGG
ATCGGAGGTGATCGTGGCCGGCTGGGGACGCACCAGCGACGGCACCAACT
CCTACAAGATCCGTCAGATATCGCTAAAGGTGGCCCCGGAGGCGACCTGC
CTGGATGCGTACAGCGATCACGACGAGCAGAGCTTCTGCCTCGCCCACGA
GCTGAAGGAGGGCACCTGCCACGGAGACGGAGGCGGTGGTGCCATCTATG
GCAACACGTTGATCGGGCTGACCAACTTTGTGGTGGGCGCCTGTGGCTCC
CGCTATCCGGATGTCTTTGTCCGACTCTCCAGCTACGCGGATTGGATCCA
GGAGCAGATCGCCGCAAGCTTTCTAGACCAT

BO06677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 750 CG9675-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 1263 CG9675-RA 76..822 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16700887..16701412 763..238 2630 100 Minus
X 23542271 X 16701677..16701897 237..17 1105 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:40:08 has no hits.

BO06677.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:47 Download gff for BO06677.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 1..750 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:16 Download gff for BO06677.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 60..806 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:15 Download gff for BO06677.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..822 17..765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:47 Download gff for BO06677.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 60..806 17..763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:16 Download gff for BO06677.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 76..822 17..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:16 Download gff for BO06677.complete
Subject Subject Range Query Range Percent Splice Strand
X 16700885..16701412 238..765 99 <- Minus
X 16701677..16701897 17..237 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:15 Download gff for BO06677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16594918..16595445 238..765 99 <- Minus
arm_X 16595710..16595930 17..237 100   Minus

BO06677.pep Sequence

Translation from 16 to 781

> BO06677.pep
MMQPRLVILGLIGLTAVGMCHAQGRIMGGEDADATATTFTASLRVDNAHV
CGGSILSQTKILTTAHCVHRDGKLIDASRLACRVGSTNQYAGGKIVNVES
VAVHPDYYNLNNNLAVITLSSELTYTDRITAIPLVASGEALPAEGSEVIV
AGWGRTSDGTNSYKIRQISLKVAPEATCLDAYSDHDEQSFCLAHELKEGT
CHGDGGGGAIYGNTLIGLTNFVVGACGSRYPDVFVRLSSYADWIQEQIAA
SFLDH

BO06677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-PA 249 CG9675-PA 1..249 1..249 1296 100 Plus
CG9673-PB 261 CG9673-PB 1..257 1..245 464 42.8 Plus
CG9673-PA 261 CG9673-PA 1..257 1..245 464 42.8 Plus
Ser6-PA 259 CG2071-PA 30..255 24..246 386 38 Plus
CG9672-PA 253 CG9672-PA 7..251 9..248 384 37.2 Plus