Clone BO06678 Report

Search the DGRC for BO06678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG5770-RA
Protein status:BO06678.pep: validated full length
Sequenced Size:673

Clone Sequence Records

BO06678.3prime Sequence

671 bp (670 high quality bases) assembled on 2005-12-03

> BO06678.3prime
ATGGTCTAGAAAGCTTGCAAGGCCAAATAGGAAACCCCCGTCTGTGGTAG
AGGTAGTTTGAGGGGCGGCTGATGAGGATGTGGCGGTAGTGGTGGGCACT
CCATTCTTGAGGCAATTGTCCAGCAGATCGTAGGTGGCAGCTGTATCCCG
GACGTAGTTGTTCTGCGTTGTGTTGGTGCACTGGTACTCGGTGTCCTGGA
TGGCTTGGATGCCCGAGCTGAAGGAGGTGGCCGAGCTGGCAGCGTTGCTG
GCCAGGTTGTAGATCACAGAGACGTCATTATCAGCAGCATTCGCGTAGCA
GTTGAAGAAGTTTGCGGTATCATTGTTGCTGTCGCAGGCGGTAAAGGCAC
TGCAGAGTGTTGAAACGTCGGACTGATAGGTCTTCTGCTGCTGCTCCGCC
TGGGCGGTCAAATTGGCGATCTGGGCATTGGCGGTGGTGATGCAGTCCTG
ATAGGAACTCGAGAAAGTGGCAGCCACTTGATTCAGCATAGGCATGTATA
AGTTGAAGCACTGCGTGGTCATATCCTCGGAAACAAATGTATCCAGACTG
CGAGCATGCACCAAATACTGATCCAAGGCACTCTGGATCTGGTTATTGGG
CTTGGCGTTGGCCGCCAAAACGCTGGCGAAGATAAGCACGGTGCACAGAA
TATTCATGTCGACTGATAACT

BO06678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 642 CG5770-RA 1..639 657..19 3195 100 Minus
CG5767-PA 762 CG5767-RA 451..547 213..117 335 93.8 Minus
CG5767-PA 762 CG5767-RA 29..63 629..595 150 97.1 Minus
CG5767-PA 762 CG5767-RA 185..236 479..428 135 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 910 CG5770-RA 22..666 663..19 3210 99.8 Minus
CG5767-RA 854 CG5767-RA 41..617 659..89 1335 82.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18044619..18044940 285..606 1610 100 Plus
2R 25286936 2R 18044290..18044556 19..285 1335 100 Plus
2R 25286936 2R 18047002..18047300 287..585 670 81.6 Plus
2R 25286936 2R 18046623..18046811 89..277 540 85.7 Plus
2R 25286936 2R 18044995..18045052 606..663 275 98.3 Plus
Blast to na_te.dros performed on 2015-02-11 05:06:14 has no hits.

BO06678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:30 Download gff for BO06678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 16..657 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:38 Download gff for BO06678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 16..657 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:36 Download gff for BO06678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 17..668 19..671 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:36 Download gff for BO06678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 15..666 19..671 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:36 Download gff for BO06678.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18044620..18044940 286..606 100 <- Plus
2R 18044996..18045058 607..671 92   Plus
2R 18044290..18044556 19..285 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:36 Download gff for BO06678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13931795..13932061 19..285 100 <- Plus
arm_2R 13932125..13932445 286..606 100 <- Plus
arm_2R 13932501..13932563 607..671 92   Plus

BO06678.5prime Sequence

671 bp (670 high quality bases) assembled on 2005-12-03

> BO06678.5prime
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTGCAAGCTTTCTAGACC

BO06678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 642 CG5770-RA 1..639 17..655 3195 100 Plus
CG5767-PA 762 CG5767-RA 451..547 461..557 335 93.8 Plus
CG5767-PA 762 CG5767-RA 29..63 45..79 150 97.1 Plus
CG5767-PA 762 CG5767-RA 185..236 195..246 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 910 CG5770-RA 22..666 11..655 3210 99.8 Plus
CG5767-RA 854 CG5767-RA 41..617 15..585 1335 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18044619..18044940 389..68 1610 100 Minus
2R 25286936 2R 18044290..18044556 655..389 1335 100 Minus
2R 25286936 2R 18047002..18047300 387..89 670 81.6 Minus
2R 25286936 2R 18046623..18046811 585..397 540 85.7 Minus
2R 25286936 2R 18044995..18045052 68..11 275 98.3 Minus
Blast to na_te.dros performed on 2015-02-13 16:07:02 has no hits.

BO06678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:31 Download gff for BO06678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 17..658 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:39 Download gff for BO06678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-PA 1..642 17..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:48 Download gff for BO06678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 16..668 1..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:39 Download gff for BO06678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 14..666 1..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:39 Download gff for BO06678.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18044290..18044556 389..655 100 <- Minus
2R 18044620..18044940 68..388 100 <- Minus
2R 18044996..18045060 1..67 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:48 Download gff for BO06678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13931795..13932061 389..655 100 <- Minus
arm_2R 13932125..13932445 68..388 100 <- Minus
arm_2R 13932501..13932565 1..67 92   Minus

BO06678.complete Sequence

673 bp (673 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630489

> BO06678.complete
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTGCAAGCTTTCTAGACCAT

BO06678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 642 CG5770-PA 1..639 17..655 3195 100 Plus
CG5767-RA 762 CG5767-PA 1..575 17..585 1280 81.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 910 CG5770-RA 22..666 11..655 3210 99.8 Plus
CG5767-RA 854 CG5767-RA 41..617 15..585 1290 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18044619..18044940 389..68 1610 100 Minus
2R 25286936 2R 18044290..18044556 655..389 1335 100 Minus
2R 25286936 2R 18047002..18047300 387..89 670 81.6 Minus
2R 25286936 2R 18046623..18046811 585..397 540 85.7 Minus
2R 25286936 2R 18044995..18045052 68..11 275 98.3 Minus
Blast to na_te.dros performed on 2014-11-27 23:58:15 has no hits.

BO06678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:48 Download gff for BO06678.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..642 17..658 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:19 Download gff for BO06678.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..653 4..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:38 Download gff for BO06678.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 30..668 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:48 Download gff for BO06678.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..653 4..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:53 Download gff for BO06678.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 28..666 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:53 Download gff for BO06678.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18044287..18044556 389..657 99 <- Minus
2R 18044620..18044940 68..388 100 <- Minus
2R 18044996..18045046 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:38 Download gff for BO06678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13931792..13932061 389..657 99 <- Minus
arm_2R 13932125..13932445 68..388 100 <- Minus
arm_2R 13932501..13932551 17..67 100   Minus

BO06678.pep Sequence

Translation from 16 to 673

> BO06678.pep
MNILCTVLIFASVLAANAKPNNQIQSALDQYLVHARSLDTFVSEDMTTQC
FNLYMPMLNQVAATFSSSYQDCITTANAQIANLTAQAEQQQKTYQSDVST
LCSAFTACDSNNDTANFFNCYANAADNDVSVIYNLASNAASSATSFSSGI
QAIQDTEYQCTNTTQNNYVRDTAATYDLLDNCLKNGVPTTTATSSSAAPQ
TTSTTDGGFLFGLASFLDH

BO06678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 213 CG5770-PA 1..213 1..213 1091 100 Plus
CG5767-PA 253 CG5767-PA 1..204 1..206 800 75 Plus
CG10911-PA 359 CG10911-PA 5..207 4..206 259 26.2 Plus
CG34005-PC 185 CG34005-PC 5..180 7..184 208 27.9 Plus
CG34005-PB 185 CG34005-PB 5..180 7..184 208 27.9 Plus