Clone Sequence Records
BO06678.3prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06678.3prime
ATGGTCTAGAAAGCTTGCAAGGCCAAATAGGAAACCCCCGTCTGTGGTAG
AGGTAGTTTGAGGGGCGGCTGATGAGGATGTGGCGGTAGTGGTGGGCACT
CCATTCTTGAGGCAATTGTCCAGCAGATCGTAGGTGGCAGCTGTATCCCG
GACGTAGTTGTTCTGCGTTGTGTTGGTGCACTGGTACTCGGTGTCCTGGA
TGGCTTGGATGCCCGAGCTGAAGGAGGTGGCCGAGCTGGCAGCGTTGCTG
GCCAGGTTGTAGATCACAGAGACGTCATTATCAGCAGCATTCGCGTAGCA
GTTGAAGAAGTTTGCGGTATCATTGTTGCTGTCGCAGGCGGTAAAGGCAC
TGCAGAGTGTTGAAACGTCGGACTGATAGGTCTTCTGCTGCTGCTCCGCC
TGGGCGGTCAAATTGGCGATCTGGGCATTGGCGGTGGTGATGCAGTCCTG
ATAGGAACTCGAGAAAGTGGCAGCCACTTGATTCAGCATAGGCATGTATA
AGTTGAAGCACTGCGTGGTCATATCCTCGGAAACAAATGTATCCAGACTG
CGAGCATGCACCAAATACTGATCCAAGGCACTCTGGATCTGGTTATTGGG
CTTGGCGTTGGCCGCCAAAACGCTGGCGAAGATAAGCACGGTGCACAGAA
TATTCATGTCGACTGATAACT
BO06678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-PA | 642 | CG5770-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
CG5767-PA | 762 | CG5767-RA | 451..547 | 213..117 | 335 | 93.8 | Minus |
CG5767-PA | 762 | CG5767-RA | 29..63 | 629..595 | 150 | 97.1 | Minus |
CG5767-PA | 762 | CG5767-RA | 185..236 | 479..428 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 910 | CG5770-RA | 22..666 | 663..19 | 3210 | 99.8 | Minus |
CG5767-RA | 854 | CG5767-RA | 41..617 | 659..89 | 1335 | 82.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18044619..18044940 | 285..606 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 18044290..18044556 | 19..285 | 1335 | 100 | Plus |
2R | 25286936 | 2R | 18047002..18047300 | 287..585 | 670 | 81.6 | Plus |
2R | 25286936 | 2R | 18046623..18046811 | 89..277 | 540 | 85.7 | Plus |
2R | 25286936 | 2R | 18044995..18045052 | 606..663 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:06:14 has no hits.
BO06678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:30 Download gff for
BO06678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 16..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:38 Download gff for
BO06678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 16..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:36 Download gff for
BO06678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 17..668 | 19..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:36 Download gff for
BO06678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 15..666 | 19..671 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:36 Download gff for
BO06678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18044620..18044940 | 286..606 | 100 | <- | Plus |
2R | 18044996..18045058 | 607..671 | 92 | | Plus |
2R | 18044290..18044556 | 19..285 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:36 Download gff for
BO06678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13931795..13932061 | 19..285 | 100 | <- | Plus |
arm_2R | 13932125..13932445 | 286..606 | 100 | <- | Plus |
arm_2R | 13932501..13932563 | 607..671 | 92 | | Plus |
BO06678.5prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06678.5prime
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTGCAAGCTTTCTAGACC
BO06678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-PA | 642 | CG5770-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG5767-PA | 762 | CG5767-RA | 451..547 | 461..557 | 335 | 93.8 | Plus |
CG5767-PA | 762 | CG5767-RA | 29..63 | 45..79 | 150 | 97.1 | Plus |
CG5767-PA | 762 | CG5767-RA | 185..236 | 195..246 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 910 | CG5770-RA | 22..666 | 11..655 | 3210 | 99.8 | Plus |
CG5767-RA | 854 | CG5767-RA | 41..617 | 15..585 | 1335 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18044619..18044940 | 389..68 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 18044290..18044556 | 655..389 | 1335 | 100 | Minus |
2R | 25286936 | 2R | 18047002..18047300 | 387..89 | 670 | 81.6 | Minus |
2R | 25286936 | 2R | 18046623..18046811 | 585..397 | 540 | 85.7 | Minus |
2R | 25286936 | 2R | 18044995..18045052 | 68..11 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:07:02 has no hits.
BO06678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:31 Download gff for
BO06678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:39 Download gff for
BO06678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-PA | 1..642 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:48 Download gff for
BO06678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 16..668 | 1..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:39 Download gff for
BO06678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 14..666 | 1..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:39 Download gff for
BO06678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18044290..18044556 | 389..655 | 100 | <- | Minus |
2R | 18044620..18044940 | 68..388 | 100 | <- | Minus |
2R | 18044996..18045060 | 1..67 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:48 Download gff for
BO06678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13931795..13932061 | 389..655 | 100 | <- | Minus |
arm_2R | 13932125..13932445 | 68..388 | 100 | <- | Minus |
arm_2R | 13932501..13932565 | 1..67 | 92 | | Minus |
BO06678.complete Sequence
673 bp (673 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630489
> BO06678.complete
GAAGTTATCAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCA
GCGTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTG
GATCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGA
TATGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGG
CTGCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCC
CAGATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCA
GTCCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACA
ATGATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGAC
GTCTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTC
CTTCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCA
ACACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTG
CTGGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTC
ATCAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTG
GCCTTGCAAGCTTTCTAGACCAT
BO06678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 642 | CG5770-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG5767-RA | 762 | CG5767-PA | 1..575 | 17..585 | 1280 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-RA | 910 | CG5770-RA | 22..666 | 11..655 | 3210 | 99.8 | Plus |
CG5767-RA | 854 | CG5767-RA | 41..617 | 15..585 | 1290 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18044619..18044940 | 389..68 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 18044290..18044556 | 655..389 | 1335 | 100 | Minus |
2R | 25286936 | 2R | 18047002..18047300 | 387..89 | 670 | 81.6 | Minus |
2R | 25286936 | 2R | 18046623..18046811 | 585..397 | 540 | 85.7 | Minus |
2R | 25286936 | 2R | 18044995..18045052 | 68..11 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:58:15 has no hits.
BO06678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:48 Download gff for
BO06678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 1..642 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:19 Download gff for
BO06678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 1..653 | 4..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:38 Download gff for
BO06678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 30..668 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:48 Download gff for
BO06678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 1..653 | 4..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:53 Download gff for
BO06678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5770-RA | 28..666 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:53 Download gff for
BO06678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18044287..18044556 | 389..657 | 99 | <- | Minus |
2R | 18044620..18044940 | 68..388 | 100 | <- | Minus |
2R | 18044996..18045046 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:38 Download gff for
BO06678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13931792..13932061 | 389..657 | 99 | <- | Minus |
arm_2R | 13932125..13932445 | 68..388 | 100 | <- | Minus |
arm_2R | 13932501..13932551 | 17..67 | 100 | | Minus |
BO06678.pep Sequence
Translation from 16 to 673
> BO06678.pep
MNILCTVLIFASVLAANAKPNNQIQSALDQYLVHARSLDTFVSEDMTTQC
FNLYMPMLNQVAATFSSSYQDCITTANAQIANLTAQAEQQQKTYQSDVST
LCSAFTACDSNNDTANFFNCYANAADNDVSVIYNLASNAASSATSFSSGI
QAIQDTEYQCTNTTQNNYVRDTAATYDLLDNCLKNGVPTTTATSSSAAPQ
TTSTTDGGFLFGLASFLDH
BO06678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5770-PA | 213 | CG5770-PA | 1..213 | 1..213 | 1091 | 100 | Plus |
CG5767-PA | 253 | CG5767-PA | 1..204 | 1..206 | 800 | 75 | Plus |
CG10911-PA | 359 | CG10911-PA | 5..207 | 4..206 | 259 | 26.2 | Plus |
CG34005-PC | 185 | CG34005-PC | 5..180 | 7..184 | 208 | 27.9 | Plus |
CG34005-PB | 185 | CG34005-PB | 5..180 | 7..184 | 208 | 27.9 | Plus |