Clone Sequence Records
BO06679.3prime Sequence
939 bp (811 high quality bases) assembled on 2005-12-03
> BO06679.3prime
ATGGTCTAGAAAGCTTGCAGCTACTTGGTACTTGAGCCTATCAATGTCCT
TGCCCTTGGGTTGGGTCTGCTGGTGAAGGGGCGCGATCTCCAGAGGTTTG
GGCGTGGGAGTGTCCTTCAGTGGCATAGGCGGCATAGCGATGTCCTCGGT
CGTCTTTGCAGGCTCCAAAACTGAAACTGGTTTTGGAACTGCTACTTGAA
TAGGAACTGGCACTGGCTTCTGGGTGGATTCCACTTTCTTCTGTGGCATT
AGGGAAAGGGGATCCTTCTGCTTGTTTTCCTTTTGGTCATCCTTCTCCTC
GCTGCTTTCGCTGCTGTCCTTCTCGTTCTTATTTTTCTCAGCCTTCTCCT
TCTTCTTTTGCTCCTTCTCCAGCTTGTGTTGTTCCTCCTCCTGCTTACGC
TTCTCCTCCTCCAGCTTCAATTGCTCCACGATGGCCGCATCCCGGAAATA
AGGCGATGACCGGAACTTCTTGTCGGCATAGGCAGTTTCCTGCGGATATT
TCGCCTGGCACTCGGCATAGGCGAAGTCCGTCCAAAGACCGTGGGATCGG
CACTTGGCTACACCCAACTTGCACTTGTTGTAGAAAACGGCCACCTCTGA
GGTGGTCCTGCCGCAGATGGGCTCGTACAGTTCATCGCAATCATCGTCGC
ACAGATAGCCCTCGCTCAAGGACTGCGCGGCACTGTTGATAGCCGCGGAA
TTGGAAGACTGGCAATTCTTCTGGCCCGACTCACAGCTGAACCAGGCGAT
GGGAATGGCCAAATAGGGGGGACTTAGACGCTTCTGTGCGGCTCCAATCT
CACCGGGAGCCGCAAAGGTGCGCTTTACATAGTAGCCGTGCTCTTCGGTG
GAAATTGGAGTGTTTCCAGCCAAATCCGTGGAGCTAGACCACTTGGTCTT
TGTCTTGGTCTTGTGGGGATCAGACTTTTCATAGTGATG
BO06679.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10717-PA | 1026 | ImpL1-RA | 103..1023 | 939..19 | 4605 | 100 | Minus |
CG10717-PB | 1101 | ImpL1-RB | 178..1098 | 939..19 | 4605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RC | 1157 | CG10717-RC | 140..1060 | 939..19 | 4605 | 100 | Minus |
ImpL1-RB | 1230 | CG10717-RB | 213..1133 | 939..19 | 4605 | 100 | Minus |
ImpL1-RA | 1160 | CG10717-RA | 143..1063 | 939..19 | 4605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13382982..13383902 | 939..19 | 4605 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 05:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 417..299 | 117 | 56.8 | Minus |
BO06679.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:32 Download gff for
BO06679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-PA | 103..1026 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:40 Download gff for
BO06679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10717-PB | 178..1101 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:38 Download gff for
BO06679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RA | 143..1071 | 13..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:50 Download gff for
BO06679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RA | 143..1071 | 13..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:50 Download gff for
BO06679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13382982..13383910 | 13..939 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:38 Download gff for
BO06679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13376082..13377010 | 13..939 | 99 | | Minus |
BO06679.5prime Sequence
871 bp (770 high quality bases) assembled on 2005-12-03
> BO06679.5prime
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAAGATGACCAA
AAGGAAACAAGCAGAAGGATC
BO06679.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10717-PB | 1101 | ImpL1-RB | 1..841 | 17..857 | 4180 | 99.8 | Plus |
CG10717-PA | 1026 | ImpL1-RA | 29..766 | 120..857 | 3665 | 99.8 | Plus |
CG10717-PA | 1026 | ImpL1-RA | 1..31 | 17..47 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RB | 1230 | CG10717-RB | 34..891 | 15..871 | 4250 | 99.8 | Plus |
ImpL1-RA | 1160 | CG10717-RA | 69..821 | 120..871 | 3725 | 99.7 | Plus |
ImpL1-RC | 1157 | CG10717-RC | 70..818 | 124..871 | 3705 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13382803..13383660 | 15..871 | 4225 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-04 20:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 716..834 | 117 | 56.8 | Plus |
BO06679.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:33 Download gff for
BO06679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-PB | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:41 Download gff for
BO06679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10717-PB | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:36 Download gff for
BO06679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 27..891 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:14 Download gff for
BO06679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 27..891 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:14 Download gff for
BO06679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13382796..13383660 | 9..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:36 Download gff for
BO06679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13375896..13376760 | 9..871 | 99 | | Plus |
BO06679.complete Sequence
1132 bp (1132 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630490
> BO06679.complete
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAGGATGACCAA
AAGGAAAACAAGCAGAAGGATCCCCTTTCCCTAATGCCACAGAAGAAAGT
GGAATCCACCCAGAAGCCAGTGCCAGTTCCTATTCAAGTAGCAGTTCCAA
AACCAGTTTCAGTTTTGGAGCCTGCAAAGACGACCGAGGACATCGCTATG
CCGCCTATGCCACTGAAGGACACTCCCACGCCCAAACCTCTGGAGATCGC
GCCCCTTCACCAGCAGACCCAACCCAAGGGCAAGGACATTGATAGGCTCA
AGTACCAAGTAGCTGCAAGCTTTCTAGACCAT
BO06679.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RB | 1101 | CG10717-PB | 1..1098 | 17..1114 | 5490 | 100 | Plus |
ImpL1-RA | 1026 | CG10717-PA | 29..1023 | 120..1114 | 4975 | 100 | Plus |
ImpL1-RC | 1023 | CG10717-PC | 30..1020 | 124..1114 | 4955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-RB | 1230 | CG10717-RB | 34..1133 | 15..1114 | 5500 | 100 | Plus |
ImpL1-RA | 1160 | CG10717-RA | 69..1063 | 120..1114 | 4975 | 100 | Plus |
ImpL1-RC | 1157 | CG10717-RC | 70..1060 | 124..1114 | 4955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13382803..13383902 | 15..1114 | 5500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 8767..8891 | 716..834 | 117 | 56.8 | Plus |
BO06679.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:49 Download gff for
BO06679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 1..1101 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:21 Download gff for
BO06679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 11..1125 | 9..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:56 Download gff for
BO06679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 36..1133 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:51 Download gff for
BO06679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 11..1125 | 9..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:58 Download gff for
BO06679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL1-RB | 36..1133 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:58 Download gff for
BO06679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13382805..13383902 | 17..1116 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:56 Download gff for
BO06679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13375905..13377002 | 17..1116 | 99 | | Plus |
BO06679.pep Sequence
Translation from 16 to 1132
> BO06679.pep
MRPYQVVCIVGKSRISKLTSSGSPIINWYAPISFLAVAALLLLEAIPADA
KRRKHKGSDHHYEKSDPHKTKTKTKWSSSTDLAGNTPISTEEHGYYVKRT
FAAPGEIGAAQKRLSPPYLAIPIAWFSCESGQKNCQSSNSAAINSAAQSL
SEGYLCDDDCDELYEPICGRTTSEVAVFYNKCKLGVAKCRSHGLWTDFAY
AECQAKYPQETAYADKKFRSSPYFRDAAIVEQLKLEEEKRKQEEEQHKLE
KEQKKKEKAEKNKNEKDSSESSEEKDDQKENKQKDPLSLMPQKKVESTQK
PVPVPIQVAVPKPVSVLEPAKTTEDIAMPPMPLKDTPTPKPLEIAPLHQQ
TQPKGKDIDRLKYQVAASFLDH
BO06679.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL1-PB | 366 | CG10717-PB | 1..366 | 1..366 | 1925 | 100 | Plus |
ImpL1-PA | 341 | CG10717-PA | 1..341 | 1..366 | 1761 | 93.2 | Plus |
ImpL1-PC | 340 | CG10717-PC | 1..340 | 1..366 | 1756 | 92.9 | Plus |