Clone BO06679 Report

Search the DGRC for BO06679

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptImpL1-RB
Protein status:BO06679.pep: validated full length
Sequenced Size:1132

Clone Sequence Records

BO06679.3prime Sequence

939 bp (811 high quality bases) assembled on 2005-12-03

> BO06679.3prime
ATGGTCTAGAAAGCTTGCAGCTACTTGGTACTTGAGCCTATCAATGTCCT
TGCCCTTGGGTTGGGTCTGCTGGTGAAGGGGCGCGATCTCCAGAGGTTTG
GGCGTGGGAGTGTCCTTCAGTGGCATAGGCGGCATAGCGATGTCCTCGGT
CGTCTTTGCAGGCTCCAAAACTGAAACTGGTTTTGGAACTGCTACTTGAA
TAGGAACTGGCACTGGCTTCTGGGTGGATTCCACTTTCTTCTGTGGCATT
AGGGAAAGGGGATCCTTCTGCTTGTTTTCCTTTTGGTCATCCTTCTCCTC
GCTGCTTTCGCTGCTGTCCTTCTCGTTCTTATTTTTCTCAGCCTTCTCCT
TCTTCTTTTGCTCCTTCTCCAGCTTGTGTTGTTCCTCCTCCTGCTTACGC
TTCTCCTCCTCCAGCTTCAATTGCTCCACGATGGCCGCATCCCGGAAATA
AGGCGATGACCGGAACTTCTTGTCGGCATAGGCAGTTTCCTGCGGATATT
TCGCCTGGCACTCGGCATAGGCGAAGTCCGTCCAAAGACCGTGGGATCGG
CACTTGGCTACACCCAACTTGCACTTGTTGTAGAAAACGGCCACCTCTGA
GGTGGTCCTGCCGCAGATGGGCTCGTACAGTTCATCGCAATCATCGTCGC
ACAGATAGCCCTCGCTCAAGGACTGCGCGGCACTGTTGATAGCCGCGGAA
TTGGAAGACTGGCAATTCTTCTGGCCCGACTCACAGCTGAACCAGGCGAT
GGGAATGGCCAAATAGGGGGGACTTAGACGCTTCTGTGCGGCTCCAATCT
CACCGGGAGCCGCAAAGGTGCGCTTTACATAGTAGCCGTGCTCTTCGGTG
GAAATTGGAGTGTTTCCAGCCAAATCCGTGGAGCTAGACCACTTGGTCTT
TGTCTTGGTCTTGTGGGGATCAGACTTTTCATAGTGATG

BO06679.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10717-PA 1026 ImpL1-RA 103..1023 939..19 4605 100 Minus
CG10717-PB 1101 ImpL1-RB 178..1098 939..19 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RC 1157 CG10717-RC 140..1060 939..19 4605 100 Minus
ImpL1-RB 1230 CG10717-RB 213..1133 939..19 4605 100 Minus
ImpL1-RA 1160 CG10717-RA 143..1063 939..19 4605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13382982..13383902 939..19 4605 100 Minus
Blast to na_te.dros performed 2015-02-11 05:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 8767..8891 417..299 117 56.8 Minus

BO06679.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:32 Download gff for BO06679.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-PA 103..1026 18..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:40 Download gff for BO06679.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10717-PB 178..1101 18..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:38 Download gff for BO06679.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 143..1071 13..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:50 Download gff for BO06679.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 143..1071 13..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:50 Download gff for BO06679.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13382982..13383910 13..939 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:38 Download gff for BO06679.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13376082..13377010 13..939 99   Minus

BO06679.5prime Sequence

871 bp (770 high quality bases) assembled on 2005-12-03

> BO06679.5prime
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAAGATGACCAA
AAGGAAACAAGCAGAAGGATC

BO06679.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10717-PB 1101 ImpL1-RB 1..841 17..857 4180 99.8 Plus
CG10717-PA 1026 ImpL1-RA 29..766 120..857 3665 99.8 Plus
CG10717-PA 1026 ImpL1-RA 1..31 17..47 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RB 1230 CG10717-RB 34..891 15..871 4250 99.8 Plus
ImpL1-RA 1160 CG10717-RA 69..821 120..871 3725 99.7 Plus
ImpL1-RC 1157 CG10717-RC 70..818 124..871 3705 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13382803..13383660 15..871 4225 99.8 Plus
Blast to na_te.dros performed 2015-02-04 20:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 8767..8891 716..834 117 56.8 Plus

BO06679.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:33 Download gff for BO06679.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-PB 1..856 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:41 Download gff for BO06679.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10717-PB 1..856 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:36 Download gff for BO06679.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 27..891 9..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:14 Download gff for BO06679.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 27..891 9..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:14 Download gff for BO06679.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13382796..13383660 9..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:36 Download gff for BO06679.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13375896..13376760 9..871 99   Plus

BO06679.complete Sequence

1132 bp (1132 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630490

> BO06679.complete
GAAGTTATCAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTA
AGTCTCGCATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGG
TATGCGCCCATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGC
GATTCCCGCGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACT
ATGAAAAGTCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGC
TCCACGGATTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTA
CTATGTAAAGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGA
AGCGTCTAAGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGT
GAGTCGGGCCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAG
TGCCGCGCAGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATG
AACTGTACGAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTC
TACAACAAGTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTG
GACGGACTTCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTG
CCTATGCCGACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCC
ATCGTGGAGCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGA
ACAACACAAGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAA
ATAAGAACGAGAAGGACAGCAGCGAAAGCAGCGAGGAGAAGGATGACCAA
AAGGAAAACAAGCAGAAGGATCCCCTTTCCCTAATGCCACAGAAGAAAGT
GGAATCCACCCAGAAGCCAGTGCCAGTTCCTATTCAAGTAGCAGTTCCAA
AACCAGTTTCAGTTTTGGAGCCTGCAAAGACGACCGAGGACATCGCTATG
CCGCCTATGCCACTGAAGGACACTCCCACGCCCAAACCTCTGGAGATCGC
GCCCCTTCACCAGCAGACCCAACCCAAGGGCAAGGACATTGATAGGCTCA
AGTACCAAGTAGCTGCAAGCTTTCTAGACCAT

BO06679.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RB 1101 CG10717-PB 1..1098 17..1114 5490 100 Plus
ImpL1-RA 1026 CG10717-PA 29..1023 120..1114 4975 100 Plus
ImpL1-RC 1023 CG10717-PC 30..1020 124..1114 4955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-RB 1230 CG10717-RB 34..1133 15..1114 5500 100 Plus
ImpL1-RA 1160 CG10717-RA 69..1063 120..1114 4975 100 Plus
ImpL1-RC 1157 CG10717-RC 70..1060 124..1114 4955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13382803..13383902 15..1114 5500 100 Plus
Blast to na_te.dros performed 2014-11-27 13:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 8767..8891 716..834 117 56.8 Plus

BO06679.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:49 Download gff for BO06679.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 1..1101 17..1115 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:21 Download gff for BO06679.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 11..1125 9..1120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:56 Download gff for BO06679.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 36..1133 17..1116 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:51 Download gff for BO06679.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 11..1125 9..1120 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:58 Download gff for BO06679.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RB 36..1133 17..1116 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:58 Download gff for BO06679.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13382805..13383902 17..1116 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:56 Download gff for BO06679.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13375905..13377002 17..1116 99   Plus

BO06679.pep Sequence

Translation from 16 to 1132

> BO06679.pep
MRPYQVVCIVGKSRISKLTSSGSPIINWYAPISFLAVAALLLLEAIPADA
KRRKHKGSDHHYEKSDPHKTKTKTKWSSSTDLAGNTPISTEEHGYYVKRT
FAAPGEIGAAQKRLSPPYLAIPIAWFSCESGQKNCQSSNSAAINSAAQSL
SEGYLCDDDCDELYEPICGRTTSEVAVFYNKCKLGVAKCRSHGLWTDFAY
AECQAKYPQETAYADKKFRSSPYFRDAAIVEQLKLEEEKRKQEEEQHKLE
KEQKKKEKAEKNKNEKDSSESSEEKDDQKENKQKDPLSLMPQKKVESTQK
PVPVPIQVAVPKPVSVLEPAKTTEDIAMPPMPLKDTPTPKPLEIAPLHQQ
TQPKGKDIDRLKYQVAASFLDH

BO06679.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-PB 366 CG10717-PB 1..366 1..366 1925 100 Plus
ImpL1-PA 341 CG10717-PA 1..341 1..366 1761 93.2 Plus
ImpL1-PC 340 CG10717-PC 1..340 1..366 1756 92.9 Plus