Clone BO06683 Report

Search the DGRC for BO06683

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG6271-RA
Protein status:BO06683.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO06683.3prime Sequence

523 bp (477 high quality bases) assembled on 2005-12-03

> BO06683.3prime
ATGGTCTAGAAAGCTTGCGTTAATCATGCCGAAGGGAGCCTTGCTGTTCA
CGGGCACATAGAAGTCACCCTCGACCATGTAGGCGTTGGTATCAGCTCCC
ATGCGAACGCTGGAGTAGGTGCTTCCGCACTCCTTGGCAACGGCTTCCTC
GTAGTCTCCGCACTTCATGGTTCCGAAGTTGTCCTCGGAGACGGCCTCGG
CGTAGTAGGTTGTTGAGCGTCCGTGGGAGCAGGCTCCAGTCACATCCAGA
GGGCAGCCGGGCTGGGTCTTTCCTCCGTTGGGATAGAAAGCTCCCTTGCC
GATGGGCTTCAGGAATCCCAGAGTGCCACCGTTGGTCTGGATAGACTCCA
CATACCAGGCATCGTCGGAATTCAGACGTTTGTTGGGCTTGTTGTAGCTG
AAGAGGGGCAGGGCGGGGTCCAGACCAATGATGGTGTGCACCTGGCCGTC
GGTGTTCTTGCCGGCATATCCAGCCACATGGGCGCCCCAGCTGTGACCNA
TCACATATACGTCATTAAGATTC

BO06683.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-PA 1026 CG6271-RA 519..1023 523..19 2456 99.4 Minus
CG6277-PA 1026 CG6277-RA 538..785 504..257 1071 97.1 Minus
CG6277-PA 1026 CG6277-RA 800..1023 242..19 945 96.8 Minus
CG6295-PA 1017 CG6295-RA 682..776 351..257 300 92.6 Minus
CG6283-PA 1020 CG6283-RA 945..1009 91..27 250 95.3 Minus
CG17191-PA 1014 CG17191-RA 922..980 108..50 245 96.6 Minus
CG6283-PA 1020 CG6283-RA 880..941 156..95 235 95.1 Minus
CG6283-PA 1020 CG6283-RA 688..779 348..257 235 90.2 Minus
CG6295-PA 1017 CG6295-RA 584..639 449..394 230 96.4 Minus
CG6283-PA 1020 CG6283-RA 828..876 208..160 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1072 CG6271-RA 540..1044 523..19 2484 99.4 Minus
CG6277-RA 1085 CG6277-RA 568..1053 504..19 2119 95.7 Minus
CG6283-RA 1083 CG6283-RA 554..1039 504..22 1149 82.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27024996..27025500 19..523 2484 99.4 Plus
3R 32079331 3R 27022103..27022588 19..504 2119 95.7 Plus
3R 32079331 3R 27020282..27020767 22..504 1124 82.5 Plus
3R 32079331 3R 27005957..27006439 25..504 944 80.1 Plus
3R 32079331 3R 27018673..27019142 29..495 530 74.7 Plus
3R 32079331 3R 27017226..27017623 29..426 295 71.6 Plus
Blast to na_te.dros performed on 2015-02-13 12:19:31 has no hits.

BO06683.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:40 Download gff for BO06683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 519..1026 15..523 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:51 Download gff for BO06683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 519..1026 15..523 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:21 Download gff for BO06683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 540..1049 11..523 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:53 Download gff for BO06683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 540..1049 11..523 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:53 Download gff for BO06683.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27024991..27025500 11..523 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:21 Download gff for BO06683.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22850713..22851222 11..523 98   Plus

BO06683.5prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-03

> BO06683.5prime
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAACGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGG

BO06683.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-PA 1026 CG6271-RA 1..767 17..783 3810 99.8 Plus
CG6277-PA 1026 CG6277-RA 538..767 554..783 1025 97.8 Plus
CG6277-PA 1026 CG6277-RA 385..522 401..538 490 94.2 Plus
CG6295-PA 1017 CG6295-RA 682..758 707..783 235 92.2 Plus
CG6295-PA 1017 CG6295-RA 584..639 609..664 230 96.4 Plus
CG6283-PA 1020 CG6283-RA 688..758 710..780 205 91.5 Plus
CG6283-PA 1020 CG6283-RA 373..425 398..450 190 94.3 Plus
CG6277-PA 1026 CG6277-RA 59..105 75..121 160 93.6 Plus
CG17191-PA 1014 CG17191-RA 367..400 398..431 145 97 Plus
CG6277-PA 1026 CG6277-RA 1..48 17..64 140 91.6 Plus
CG6277-PA 1026 CG6277-RA 313..339 329..355 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1072 CG6271-RA 22..788 17..783 3820 99.9 Plus
CG6277-RA 1085 CG6277-RA 31..797 17..783 2275 86.4 Plus
CG6283-RA 1083 CG6283-RA 319..783 319..780 695 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27025252..27025979 783..56 3625 99.9 Minus
3R 32079331 3R 27022359..27023067 783..75 2150 86.9 Minus
3R 32079331 3R 27020538..27021002 780..319 670 76.8 Minus
3R 32079331 3R 27006207..27006439 783..554 590 84.5 Minus
3R 32079331 3R 27017480..27017623 775..632 225 77.1 Minus
3R 32079331 3R 27026049..27026088 56..17 200 100 Minus
3R 32079331 3R 27019251..27019307 454..398 195 89.5 Minus
Blast to na_te.dros performed on 2015-02-12 09:47:14 has no hits.

BO06683.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:41 Download gff for BO06683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 1..767 17..783 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:52 Download gff for BO06683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-PA 1..767 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:44 Download gff for BO06683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..788 17..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:59 Download gff for BO06683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..788 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:59 Download gff for BO06683.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27025252..27025978 57..783 99 <- Minus
3R 27026049..27026088 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:44 Download gff for BO06683.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22850974..22851700 57..783 99 <- Minus
arm_3R 22851771..22851810 17..56 100   Minus

BO06683.complete Sequence

1057 bp (1057 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630491

> BO06683.complete
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAACGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGGAGGAAAGACCCAGCCCG
GCTGCCCTCTGGATGTGACTGGAGCCTGCTCCCACGGACGCTCAACAACC
TACTACGCCGAGGCCGTCTCCGAGGACAACTTCGGAACCATGAAGTGCGG
AGACTACGAGGAAGCCGTTGCCAAGGAGTGCGGAAGCACCTACTCCAGCG
TTCGCATGGGAGCTGATACCAACGCCTACATGGTCGAGGGTGACTTCTAT
GTGCCCGTGAACAGCAAGGCTCCCTTCGGCATGATTAACGCAAGCTTTCT
AGACCAT

BO06683.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1026 CG6271-PA 1..1023 17..1039 5100 99.9 Plus
CG6277-RA 1026 CG6277-PA 1..1023 17..1039 3345 88.5 Plus
CG6283-RA 1020 CG6283-PA 294..1014 319..1036 1395 79.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-RA 1072 CG6271-RA 22..1044 17..1039 5100 99.9 Plus
CG6277-RA 1085 CG6277-RA 31..1053 17..1039 3345 88.5 Plus
CG6283-RA 1083 CG6283-RA 319..1039 319..1036 1395 79.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27024996..27025979 1039..56 4905 99.9 Minus
3R 32079331 3R 27022103..27023067 1039..75 3220 88.9 Minus
3R 32079331 3R 27020282..27021002 1036..319 1395 79.9 Minus
3R 32079331 3R 27005957..27006439 1033..554 970 80.5 Minus
3R 32079331 3R 27018673..27019142 1029..563 545 74.9 Minus
3R 32079331 3R 27017226..27017623 1029..632 295 71.6 Minus
3R 32079331 3R 27026049..27026088 56..17 200 100 Minus
3R 32079331 3R 27019251..27019307 454..398 195 89.5 Minus
Blast to na_te.dros performed on 2014-11-27 07:24:13 has no hits.

BO06683.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:52 Download gff for BO06683.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 1..1026 17..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:23 Download gff for BO06683.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 13..1040 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:11 Download gff for BO06683.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..1044 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:52 Download gff for BO06683.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 13..1040 17..1047 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:56 Download gff for BO06683.complete
Subject Subject Range Query Range Percent Splice Strand
CG6271-RA 22..1044 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:56 Download gff for BO06683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27024994..27025978 57..1041 99 <- Minus
3R 27026049..27026088 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:11 Download gff for BO06683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22850716..22851700 57..1041 99 <- Minus
arm_3R 22851771..22851810 17..56 100   Minus

BO06683.pep Sequence

Translation from 16 to 1057

> BO06683.pep
MKTFLILAIFALAASAYALEESERVNGENGWYVPQQDGSFEWVDMDVAEE
WMEAQEKLEGRGLTTVPVNFYLFTPKNPSSSKHIYATTKSISKSNFNPAH
PTRFVIHGWTQSYLNSMNSDIRKAFLSKGDYNVIVVDWARARSVDYATSV
MAVAATGKKVAKMINFLKDNHGLNLNDVYVIGHSLGAHVAGYAGKNTDGQ
VHTIIGLDPALPLFSYNKPNKRLNSDDAWYVESIQTNGGTLGFLKPIGKG
AFYPNGGKTQPGCPLDVTGACSHGRSTTYYAEAVSEDNFGTMKCGDYEEA
VAKECGSTYSSVRMGADTNAYMVEGDFYVPVNSKAPFGMINASFLDH

BO06683.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6271-PA 341 CG6271-PA 1..341 1..341 1816 100 Plus
CG6277-PA 341 CG6277-PA 1..341 1..341 1626 88.9 Plus
CG6283-PA 339 CG6283-PA 1..338 1..340 1224 68.6 Plus
CG6295-PA 338 CG6295-PA 2..338 1..341 1202 66.1 Plus
CG17191-PA 337 CG17191-PA 1..336 1..340 1107 62.5 Plus