Clone Sequence Records
BO06683.3prime Sequence
523 bp (477 high quality bases) assembled on 2005-12-03
> BO06683.3prime
ATGGTCTAGAAAGCTTGCGTTAATCATGCCGAAGGGAGCCTTGCTGTTCA
CGGGCACATAGAAGTCACCCTCGACCATGTAGGCGTTGGTATCAGCTCCC
ATGCGAACGCTGGAGTAGGTGCTTCCGCACTCCTTGGCAACGGCTTCCTC
GTAGTCTCCGCACTTCATGGTTCCGAAGTTGTCCTCGGAGACGGCCTCGG
CGTAGTAGGTTGTTGAGCGTCCGTGGGAGCAGGCTCCAGTCACATCCAGA
GGGCAGCCGGGCTGGGTCTTTCCTCCGTTGGGATAGAAAGCTCCCTTGCC
GATGGGCTTCAGGAATCCCAGAGTGCCACCGTTGGTCTGGATAGACTCCA
CATACCAGGCATCGTCGGAATTCAGACGTTTGTTGGGCTTGTTGTAGCTG
AAGAGGGGCAGGGCGGGGTCCAGACCAATGATGGTGTGCACCTGGCCGTC
GGTGTTCTTGCCGGCATATCCAGCCACATGGGCGCCCCAGCTGTGACCNA
TCACATATACGTCATTAAGATTC
BO06683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-PA | 1026 | CG6271-RA | 519..1023 | 523..19 | 2456 | 99.4 | Minus |
CG6277-PA | 1026 | CG6277-RA | 538..785 | 504..257 | 1071 | 97.1 | Minus |
CG6277-PA | 1026 | CG6277-RA | 800..1023 | 242..19 | 945 | 96.8 | Minus |
CG6295-PA | 1017 | CG6295-RA | 682..776 | 351..257 | 300 | 92.6 | Minus |
CG6283-PA | 1020 | CG6283-RA | 945..1009 | 91..27 | 250 | 95.3 | Minus |
CG17191-PA | 1014 | CG17191-RA | 922..980 | 108..50 | 245 | 96.6 | Minus |
CG6283-PA | 1020 | CG6283-RA | 880..941 | 156..95 | 235 | 95.1 | Minus |
CG6283-PA | 1020 | CG6283-RA | 688..779 | 348..257 | 235 | 90.2 | Minus |
CG6295-PA | 1017 | CG6295-RA | 584..639 | 449..394 | 230 | 96.4 | Minus |
CG6283-PA | 1020 | CG6283-RA | 828..876 | 208..160 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1072 | CG6271-RA | 540..1044 | 523..19 | 2484 | 99.4 | Minus |
CG6277-RA | 1085 | CG6277-RA | 568..1053 | 504..19 | 2119 | 95.7 | Minus |
CG6283-RA | 1083 | CG6283-RA | 554..1039 | 504..22 | 1149 | 82.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27024996..27025500 | 19..523 | 2484 | 99.4 | Plus |
3R | 32079331 | 3R | 27022103..27022588 | 19..504 | 2119 | 95.7 | Plus |
3R | 32079331 | 3R | 27020282..27020767 | 22..504 | 1124 | 82.5 | Plus |
3R | 32079331 | 3R | 27005957..27006439 | 25..504 | 944 | 80.1 | Plus |
3R | 32079331 | 3R | 27018673..27019142 | 29..495 | 530 | 74.7 | Plus |
3R | 32079331 | 3R | 27017226..27017623 | 29..426 | 295 | 71.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:19:31 has no hits.
BO06683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:40 Download gff for
BO06683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 519..1026 | 15..523 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:51 Download gff for
BO06683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 519..1026 | 15..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:21 Download gff for
BO06683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 540..1049 | 11..523 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:53 Download gff for
BO06683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 540..1049 | 11..523 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:53 Download gff for
BO06683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27024991..27025500 | 11..523 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:21 Download gff for
BO06683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22850713..22851222 | 11..523 | 98 | | Plus |
BO06683.5prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-03
> BO06683.5prime
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAACGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGG
BO06683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-PA | 1026 | CG6271-RA | 1..767 | 17..783 | 3810 | 99.8 | Plus |
CG6277-PA | 1026 | CG6277-RA | 538..767 | 554..783 | 1025 | 97.8 | Plus |
CG6277-PA | 1026 | CG6277-RA | 385..522 | 401..538 | 490 | 94.2 | Plus |
CG6295-PA | 1017 | CG6295-RA | 682..758 | 707..783 | 235 | 92.2 | Plus |
CG6295-PA | 1017 | CG6295-RA | 584..639 | 609..664 | 230 | 96.4 | Plus |
CG6283-PA | 1020 | CG6283-RA | 688..758 | 710..780 | 205 | 91.5 | Plus |
CG6283-PA | 1020 | CG6283-RA | 373..425 | 398..450 | 190 | 94.3 | Plus |
CG6277-PA | 1026 | CG6277-RA | 59..105 | 75..121 | 160 | 93.6 | Plus |
CG17191-PA | 1014 | CG17191-RA | 367..400 | 398..431 | 145 | 97 | Plus |
CG6277-PA | 1026 | CG6277-RA | 1..48 | 17..64 | 140 | 91.6 | Plus |
CG6277-PA | 1026 | CG6277-RA | 313..339 | 329..355 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1072 | CG6271-RA | 22..788 | 17..783 | 3820 | 99.9 | Plus |
CG6277-RA | 1085 | CG6277-RA | 31..797 | 17..783 | 2275 | 86.4 | Plus |
CG6283-RA | 1083 | CG6283-RA | 319..783 | 319..780 | 695 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27025252..27025979 | 783..56 | 3625 | 99.9 | Minus |
3R | 32079331 | 3R | 27022359..27023067 | 783..75 | 2150 | 86.9 | Minus |
3R | 32079331 | 3R | 27020538..27021002 | 780..319 | 670 | 76.8 | Minus |
3R | 32079331 | 3R | 27006207..27006439 | 783..554 | 590 | 84.5 | Minus |
3R | 32079331 | 3R | 27017480..27017623 | 775..632 | 225 | 77.1 | Minus |
3R | 32079331 | 3R | 27026049..27026088 | 56..17 | 200 | 100 | Minus |
3R | 32079331 | 3R | 27019251..27019307 | 454..398 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:47:14 has no hits.
BO06683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:41 Download gff for
BO06683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:52 Download gff for
BO06683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-PA | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:44 Download gff for
BO06683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..788 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:59 Download gff for
BO06683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..788 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:59 Download gff for
BO06683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27025252..27025978 | 57..783 | 99 | <- | Minus |
3R | 27026049..27026088 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:44 Download gff for
BO06683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22850974..22851700 | 57..783 | 99 | <- | Minus |
arm_3R | 22851771..22851810 | 17..56 | 100 | | Minus |
BO06683.complete Sequence
1057 bp (1057 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630491
> BO06683.complete
GAAGTTATCAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTC
TAGCCGCTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAG
AACGGCTGGTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACAT
GGATGTCGCTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTG
GCTTGACCACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCC
TCGAGCAGCAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAA
CTTCAACCCTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGA
GCTACTTGAACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAG
GGAGACTACAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGA
TTATGCCACCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATTAACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTA
TATGTGATTGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAACGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTATCCCAACGGAGGAAAGACCCAGCCCG
GCTGCCCTCTGGATGTGACTGGAGCCTGCTCCCACGGACGCTCAACAACC
TACTACGCCGAGGCCGTCTCCGAGGACAACTTCGGAACCATGAAGTGCGG
AGACTACGAGGAAGCCGTTGCCAAGGAGTGCGGAAGCACCTACTCCAGCG
TTCGCATGGGAGCTGATACCAACGCCTACATGGTCGAGGGTGACTTCTAT
GTGCCCGTGAACAGCAAGGCTCCCTTCGGCATGATTAACGCAAGCTTTCT
AGACCAT
BO06683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1026 | CG6271-PA | 1..1023 | 17..1039 | 5100 | 99.9 | Plus |
CG6277-RA | 1026 | CG6277-PA | 1..1023 | 17..1039 | 3345 | 88.5 | Plus |
CG6283-RA | 1020 | CG6283-PA | 294..1014 | 319..1036 | 1395 | 79.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1072 | CG6271-RA | 22..1044 | 17..1039 | 5100 | 99.9 | Plus |
CG6277-RA | 1085 | CG6277-RA | 31..1053 | 17..1039 | 3345 | 88.5 | Plus |
CG6283-RA | 1083 | CG6283-RA | 319..1039 | 319..1036 | 1395 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27024996..27025979 | 1039..56 | 4905 | 99.9 | Minus |
3R | 32079331 | 3R | 27022103..27023067 | 1039..75 | 3220 | 88.9 | Minus |
3R | 32079331 | 3R | 27020282..27021002 | 1036..319 | 1395 | 79.9 | Minus |
3R | 32079331 | 3R | 27005957..27006439 | 1033..554 | 970 | 80.5 | Minus |
3R | 32079331 | 3R | 27018673..27019142 | 1029..563 | 545 | 74.9 | Minus |
3R | 32079331 | 3R | 27017226..27017623 | 1029..632 | 295 | 71.6 | Minus |
3R | 32079331 | 3R | 27026049..27026088 | 56..17 | 200 | 100 | Minus |
3R | 32079331 | 3R | 27019251..27019307 | 454..398 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:24:13 has no hits.
BO06683.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:52 Download gff for
BO06683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 1..1026 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:23 Download gff for
BO06683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 13..1040 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:11 Download gff for
BO06683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..1044 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:52 Download gff for
BO06683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 13..1040 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:56 Download gff for
BO06683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..1044 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:56 Download gff for
BO06683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27024994..27025978 | 57..1041 | 99 | <- | Minus |
3R | 27026049..27026088 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:11 Download gff for
BO06683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22850716..22851700 | 57..1041 | 99 | <- | Minus |
arm_3R | 22851771..22851810 | 17..56 | 100 | | Minus |
BO06683.pep Sequence
Translation from 16 to 1057
> BO06683.pep
MKTFLILAIFALAASAYALEESERVNGENGWYVPQQDGSFEWVDMDVAEE
WMEAQEKLEGRGLTTVPVNFYLFTPKNPSSSKHIYATTKSISKSNFNPAH
PTRFVIHGWTQSYLNSMNSDIRKAFLSKGDYNVIVVDWARARSVDYATSV
MAVAATGKKVAKMINFLKDNHGLNLNDVYVIGHSLGAHVAGYAGKNTDGQ
VHTIIGLDPALPLFSYNKPNKRLNSDDAWYVESIQTNGGTLGFLKPIGKG
AFYPNGGKTQPGCPLDVTGACSHGRSTTYYAEAVSEDNFGTMKCGDYEEA
VAKECGSTYSSVRMGADTNAYMVEGDFYVPVNSKAPFGMINASFLDH
BO06683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-PA | 341 | CG6271-PA | 1..341 | 1..341 | 1816 | 100 | Plus |
CG6277-PA | 341 | CG6277-PA | 1..341 | 1..341 | 1626 | 88.9 | Plus |
CG6283-PA | 339 | CG6283-PA | 1..338 | 1..340 | 1224 | 68.6 | Plus |
CG6295-PA | 338 | CG6295-PA | 2..338 | 1..341 | 1202 | 66.1 | Plus |
CG17191-PA | 337 | CG17191-PA | 1..336 | 1..340 | 1107 | 62.5 | Plus |