Clone BO06686 Report

Search the DGRC for BO06686

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG8300-RA
Protein status:BO06686.pep: validated full length
Sequenced Size:589

Clone Sequence Records

BO06686.3prime Sequence

587 bp (586 high quality bases) assembled on 2005-12-03

> BO06686.3prime
ATGGTCTAGAAAGCTTGCCTGCCGTGTGGGTGGCAAGGTCGCCTCGCTGC
GTGTTGGTTCGCATAGGACGATGGTTTCGTTGCGATTGTTGTTGCCGCTG
CTGTTGTTGTTGCTGCTACTGGTCGTGGTCGACATGGCCCGCGGGTGCCA
ATTGTCAAGGTCCTCGTCGCCGTGCTCCTTGGCCCTGTGGTAGTTCTCCA
ATTCGCTGGCATACTTGCTGCTGGTGATACCAAGCAGGTGGGCCAGCCCA
CCGCCCACATAGTCGATGCCGGCCAGGAATCGGTTGCCCATCCTGCTGGC
CTTGTAACGCAGGCGTGGTCCCAGCGGCATTTCGCTCTCGTTTAAATGGA
CGTCGTAGCATTTGTCGCCCATTTCCGCATCCGCCTCGTCCTCGCTGCCC
GAGGACAACTCCTCCATGACGCCGTCGCTAAAGTACAGCATGCGCTTGTT
GGACTGCAGTTCAAGGGCGCTCACATTGTCCGTCTCGGATGCACTTGCTC
CACTCGCAGATGCCAGTTCCAATCCTCCAGCTGCACTGCGTACTTCGCCA
CTCTTGTTCCTCTCCGCTGACATGTCGACTGATAACT

BO06686.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-PA 558 CG8300-RA 1..555 573..19 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 1060 CG8300-RA 271..826 574..19 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7105792..7106111 338..19 1600 100 Minus
X 23542271 X 7105155..7105392 574..337 1190 100 Minus
Blast to na_te.dros performed 2015-02-12 23:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2562 129..19 175 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2682..2912 240..19 168 57.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2524..2682 228..70 166 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6881 230..70 158 60.5 Minus
roo 9092 roo DM_ROO 9092bp 1056..1107 132..81 152 76.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1605 117..52 150 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6815 129..46 149 67.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6851 129..46 149 67.1 Minus
roo 9092 roo DM_ROO 9092bp 1104..1163 129..70 147 71.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2352 123..79 144 80 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6819..6881 129..67 144 69.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2395 131..52 143 67.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6830 129..50 141 65.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2452 231..52 139 57.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6772 129..86 139 79.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2838 123..73 138 74.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6796 117..44 135 68 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1612 129..70 130 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6751 118..86 129 87.9 Minus
roo 9092 roo DM_ROO 9092bp 1110..1178 120..52 129 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2626 135..87 121 74 Minus
TART-A 13424 TART-A 13424bp 897..942 133..89 119 76.1 Minus
TART-A 13424 TART-A 13424bp 12075..12120 133..89 119 76.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1591 115..38 118 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2421..2547 131..6 118 61.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1546..1599 129..76 117 68.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5649..5720 112..38 114 68.4 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 529..580 114..61 112 70.4 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 979..1011 129..97 111 81.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6920 230..79 110 55.8 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 151..200 122..76 108 72 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9181..9230 122..76 108 72 Minus

BO06686.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:43 Download gff for BO06686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 18..573 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:56 Download gff for BO06686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 18..573 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:02 Download gff for BO06686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 13..587 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:02 Download gff for BO06686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 13..587 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:02 Download gff for BO06686.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7105142..7105392 337..587 98 -> Minus
X 7105794..7106116 13..336 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:02 Download gff for BO06686.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6999175..6999425 337..587 98 -> Minus
arm_X 6999827..7000149 13..336 99   Minus

BO06686.5prime Sequence

587 bp (586 high quality bases) assembled on 2005-12-03

> BO06686.5prime
GAAGTTATCAGTCGACATGTCAGCGGAGAGGAACAAGAGTGGCGAAGTAC
GCAGTGCAGCTGGAGGATTGGAACTGGCATCTGCGAGTGGAGCAAGTGCA
TCCGAGACGGACAATGTGAGCGCCCTTGAACTGCAGTCCAACAAGCGCAT
GCTGTACTTTAGCGACGGCGTCATGGAGGAGTTGTCCTCGGGCAGCGAGG
ACGAGGCGGATGCGGAAATGGGCGACAAATGCTACGACGTCCATTTAAAC
GAGAGCGAAATGCCGCTGGGACCACGCCTGCGTTACAAGGCCAGCAGGAT
GGGCAACCGATTCCTGGCCGGCATCGACTATGTGGGCGGTGGGCTGGCCC
ACCTGCTTGGTATCACCAGCAGCAAGTATGCCAGCGAATTGGAGAACTAC
CACAGGGCCAAGGAGCACGGCGACGAGGACCTTGACAATTGGCACCCGCG
GGCCATGTCGACCACGACCAGTAGCAGCAACAACAACAGCAGCGGCAACA
ACAATCGCAACGAAACCATCGTCCTATGCGAACCAACACGCAGCGAGGCG
ACCTTGCCACCCACACGGCAGGCAAGCTTTCTAGACC

BO06686.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-PA 558 CG8300-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 1060 CG8300-RA 271..826 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7105792..7106111 252..571 1600 100 Plus
X 23542271 X 7105155..7105392 16..253 1190 100 Plus
Blast to na_te.dros performed 2015-02-11 03:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2562 461..571 175 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2682..2912 350..571 168 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2524..2682 362..520 166 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6881 360..520 158 60.5 Plus
roo 9092 roo DM_ROO 9092bp 1056..1107 458..509 152 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1605 473..538 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6815 461..544 149 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6851 461..544 149 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1104..1163 461..520 147 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2352 467..511 144 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6819..6881 461..523 144 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2395 459..538 143 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6830 461..540 141 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2452 359..538 139 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6772 461..504 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2838 467..517 138 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6796 473..546 135 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1612 461..520 130 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6751 472..504 129 87.9 Plus
roo 9092 roo DM_ROO 9092bp 1110..1178 470..538 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2626 455..503 121 74 Plus
TART-A 13424 TART-A 13424bp 897..942 457..501 119 76.1 Plus
TART-A 13424 TART-A 13424bp 12075..12120 457..501 119 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1591 475..552 118 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2421..2547 459..584 118 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1546..1599 461..514 117 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5649..5720 478..552 114 68.4 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 529..580 476..529 112 70.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 979..1011 461..493 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6920 360..511 110 55.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 151..200 468..514 108 72 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9181..9230 468..514 108 72 Plus

BO06686.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:44 Download gff for BO06686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 17..572 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:58 Download gff for BO06686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-PA 1..558 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:40 Download gff for BO06686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 3..577 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:26 Download gff for BO06686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 258..831 3..577 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:26 Download gff for BO06686.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7105142..7105392 3..253 98 -> Plus
X 7105794..7106116 254..577 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:40 Download gff for BO06686.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6999175..6999425 3..253 98 -> Plus
arm_X 6999827..7000149 254..577 99   Plus

BO06686.complete Sequence

589 bp (589 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630492

> BO06686.complete
GAAGTTATCAGTCGACATGTCAGCGGAGAGGAACAAGAGTGGCGAAGTAC
GCAGTGCAGCTGGAGGATTGGAACTGGCATCTGCGAGTGGAGCAAGTGCA
TCCGAGACGGACAATGTGAGCGCCCTTGAACTGCAGTCCAACAAGCGCAT
GCTGTACTTTAGCGACGGCGTCATGGAGGAGTTGTCCTCGGGCAGCGAGG
ACGAGGCGGATGCGGAAATGGGCGACAAATGCTACGACGTCCATTTAAAC
GAGAGCGAAATGCCGCTGGGACCACGCCTGCGTTACAAGGCCAGCAGGAT
GGGCAACCGATTCCTGGCCGGCATCGACTATGTGGGCGGTGGGCTGGCCC
ACCTGCTTGGTATCACCAGCAGCAAGTATGCCAGCGAATTGGAGAACTAC
CACAGGGCCAAGGAGCACGGCGACGAGGACCTTGACAATTGGCACCCGCG
GGCCATGTCGACCACGACCAGTAGCAGCAACAACAACAGCAGCGGCAACA
ACAATCGCAACGAAACCATCGTCCTATGCGAACCAACACGCAGCGAGGCG
ACCTTGCCACCCACACGGCAGGCAAGCTTTCTAGACCAT

BO06686.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 558 CG8300-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-RA 1060 CG8300-RA 271..826 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7105792..7106111 252..571 1600 100 Plus
X 23542271 X 7105155..7105392 16..253 1190 100 Plus
Blast to na_te.dros performed 2014-11-27 07:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2562 461..571 175 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2682..2912 350..571 168 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2524..2682 362..520 166 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6881 360..520 158 60.5 Plus
roo 9092 roo DM_ROO 9092bp 1056..1107 458..509 152 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1605 473..538 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6815 461..544 149 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6768..6851 461..544 149 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1104..1163 461..520 147 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2352 467..511 144 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6819..6881 461..523 144 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2395 459..538 143 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6830 461..540 141 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2452 359..538 139 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6772 461..504 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2838 467..517 138 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6796 473..546 135 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1549..1612 461..520 130 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6751 472..504 129 87.9 Plus
roo 9092 roo DM_ROO 9092bp 1110..1178 470..538 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2626 455..503 121 74 Plus
TART-A 13424 TART-A 13424bp 897..942 457..501 119 76.1 Plus
TART-A 13424 TART-A 13424bp 12075..12120 457..501 119 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1591 475..552 118 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2421..2547 459..584 118 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1546..1599 461..514 117 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5649..5720 478..552 114 68.4 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 529..580 476..529 112 70.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 979..1011 461..493 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6920 360..511 110 55.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 151..200 468..514 108 72 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9181..9230 468..514 108 72 Plus

BO06686.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:09 Download gff for BO06686.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 1..558 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:19 Download gff for BO06686.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 243..816 3..577 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:00 Download gff for BO06686.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 272..826 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:09 Download gff for BO06686.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 243..816 3..577 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:58 Download gff for BO06686.complete
Subject Subject Range Query Range Percent Splice Strand
CG8300-RA 272..826 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:58 Download gff for BO06686.complete
Subject Subject Range Query Range Percent Splice Strand
X 7105156..7105392 17..253 100 -> Plus
X 7105794..7106111 254..573 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:00 Download gff for BO06686.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6999189..6999425 17..253 100 -> Plus
arm_X 6999827..7000144 254..573 99   Plus

BO06686.pep Sequence

Translation from 16 to 589

> BO06686.pep
MSAERNKSGEVRSAAGGLELASASGASASETDNVSALELQSNKRMLYFSD
GVMEELSSGSEDEADAEMGDKCYDVHLNESEMPLGPRLRYKASRMGNRFL
AGIDYVGGGLAHLLGITSSKYASELENYHRAKEHGDEDLDNWHPRAMSTT
TSSSNNNSSGNNNRNETIVLCEPTRSEATLPPTRQASFLDH

BO06686.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8300-PA 185 CG8300-PA 1..185 1..185 952 100 Plus