Clone Sequence Records
BO06687.3prime Sequence
644 bp (643 high quality bases) assembled on 2005-12-03
> BO06687.3prime
ATGGTCTAGAAAGCTTGCAGCTTTCTGCTTCTGCTCCTGGCCGTAGTACT
CGCTGTAATCATACTCCCTGAAGGGCACATCGTATGTTAGGTACCCGGAG
TCGCGGGCTTGCTGAACGGCGACCATTAGACGCAGGTGGCTCTTTTGACA
CAGGCCTGTCTTTGAGTAGCTAAGGACGTCTCCGCTGTGGGGCGATATGA
ACTGCTCCAGGAGCTCCGTGTTGCGGTAGTCCAGCACCAGGTATTCATCA
CGGCAAATGGGACAGGGATTTCCGGTGCTGATACGGTTCTGGCGGATGCA
CGTCTTTCGTGTTTTGCGCGGCGCATACATGCCCTTGTGGTTGCGCCGAT
ACTGCGTCCACACAAAGTCCTCGCCGTAGGTTTGCTTGTAAGCGGCGCTC
TTTAAGTATCGAATCGAGGTCTCCACTGGGATTGGTTTGCTGCGATCCTT
CGGGTCTGGTGCGGAACCACTAGCGTTATCCTCGCCTTCGCCTTCGGTGG
CAGCCGCATTATTTTCTTCAGTCGAAGTCTCCGCCTTGCATCTCAAGGCG
CTGGCCGTGTGAAGAGCTCCCCGGCTATTCCGGGTAATGTTGACCAGTCC
AATGTAAATTCCACGTGCAATCGGCAACATGTCGACTGATAACT
BO06687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10757-PA | 615 | mRpS18B-RA | 1..612 | 630..19 | 3060 | 100 | Minus |
CG10757-PB | 615 | mRpS18B-RB | 1..612 | 630..19 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 761 | CG10757-RB | 105..716 | 630..19 | 3060 | 100 | Minus |
mRpS18B-RA | 863 | CG10757-RA | 105..716 | 630..19 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20096476..20096804 | 19..347 | 1645 | 100 | Plus |
2L | 23513712 | 2L | 20096865..20097149 | 346..630 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:07:36 has no hits.
BO06687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:45 Download gff for
BO06687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:59 Download gff for
BO06687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PB | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:37 Download gff for
BO06687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..719 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:15 Download gff for
BO06687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..719 | 15..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:15 Download gff for
BO06687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20096473..20096803 | 15..346 | 99 | <- | Plus |
2L | 20096866..20097158 | 347..639 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:37 Download gff for
BO06687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20096473..20096803 | 15..346 | 99 | <- | Plus |
arm_2L | 20096866..20097158 | 347..639 | 98 | | Plus |
BO06687.5prime Sequence
644 bp (643 high quality bases) assembled on 2005-12-03
> BO06687.5prime
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTGCAAGCTTTCTAGACC
BO06687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10757-PA | 615 | mRpS18B-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
CG10757-PB | 615 | mRpS18B-RB | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 761 | CG10757-RB | 105..716 | 17..628 | 3060 | 100 | Plus |
mRpS18B-RA | 863 | CG10757-RA | 105..716 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20096476..20096804 | 628..300 | 1645 | 100 | Minus |
2L | 23513712 | 2L | 20096865..20097149 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:19:07 has no hits.
BO06687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:46 Download gff for
BO06687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:00 Download gff for
BO06687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10757-PB | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:42 Download gff for
BO06687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..719 | 8..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:18 Download gff for
BO06687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 96..719 | 8..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:18 Download gff for
BO06687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20096473..20096803 | 301..632 | 99 | <- | Minus |
2L | 20096866..20097158 | 8..300 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:42 Download gff for
BO06687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20096473..20096803 | 301..632 | 99 | <- | Minus |
arm_2L | 20096866..20097158 | 8..300 | 98 | | Minus |
BO06687.complete Sequence
646 bp (646 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630493
> BO06687.complete
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTGCAAGCTTTCTAGACCAT
BO06687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 615 | CG10757-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
mRpS18B-RA | 615 | CG10757-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-RB | 761 | CG10757-RB | 105..716 | 17..628 | 3060 | 100 | Plus |
mRpS18B-RA | 863 | CG10757-RA | 105..716 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20096476..20096804 | 628..300 | 1645 | 100 | Minus |
2L | 23513712 | 2L | 20096865..20097149 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:33:20 has no hits.
BO06687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:18 Download gff for
BO06687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RB | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:50 Download gff for
BO06687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RB | 89..712 | 8..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:45 Download gff for
BO06687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 110..716 | 22..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:18 Download gff for
BO06687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RB | 89..712 | 8..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:56 Download gff for
BO06687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18B-RA | 110..716 | 22..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:56 Download gff for
BO06687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20096474..20096803 | 301..630 | 99 | <- | Minus |
2L | 20096866..20097144 | 22..300 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:45 Download gff for
BO06687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20096474..20096803 | 301..630 | 99 | <- | Minus |
arm_2L | 20096866..20097144 | 22..300 | 100 | | Minus |
BO06687.pep Sequence
Translation from 16 to 646
> BO06687.pep
MLPIARGIYIGLVNITRNSRGALHTASALRCKAETSTEENNAAATEGEGE
DNASGSAPDPKDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKG
MYAPRKTRKTCIRQNRISTGNPCPICRDEYLVLDYRNTELLEQFISPHSG
DVLSYSKTGLCQKSHLRLMVAVQQARDSGYLTYDVPFREYDYSEYYGQEQ
KQKAASFLDH
BO06687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18B-PB | 204 | CG10757-PB | 1..204 | 1..204 | 1079 | 100 | Plus |
mRpS18B-PA | 204 | CG10757-PA | 1..204 | 1..204 | 1079 | 100 | Plus |