Clone BO06687 Report

Search the DGRC for BO06687

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS18B-RA
Protein status:BO06687.pep: validated full length
Sequenced Size:646

Clone Sequence Records

BO06687.3prime Sequence

644 bp (643 high quality bases) assembled on 2005-12-03

> BO06687.3prime
ATGGTCTAGAAAGCTTGCAGCTTTCTGCTTCTGCTCCTGGCCGTAGTACT
CGCTGTAATCATACTCCCTGAAGGGCACATCGTATGTTAGGTACCCGGAG
TCGCGGGCTTGCTGAACGGCGACCATTAGACGCAGGTGGCTCTTTTGACA
CAGGCCTGTCTTTGAGTAGCTAAGGACGTCTCCGCTGTGGGGCGATATGA
ACTGCTCCAGGAGCTCCGTGTTGCGGTAGTCCAGCACCAGGTATTCATCA
CGGCAAATGGGACAGGGATTTCCGGTGCTGATACGGTTCTGGCGGATGCA
CGTCTTTCGTGTTTTGCGCGGCGCATACATGCCCTTGTGGTTGCGCCGAT
ACTGCGTCCACACAAAGTCCTCGCCGTAGGTTTGCTTGTAAGCGGCGCTC
TTTAAGTATCGAATCGAGGTCTCCACTGGGATTGGTTTGCTGCGATCCTT
CGGGTCTGGTGCGGAACCACTAGCGTTATCCTCGCCTTCGCCTTCGGTGG
CAGCCGCATTATTTTCTTCAGTCGAAGTCTCCGCCTTGCATCTCAAGGCG
CTGGCCGTGTGAAGAGCTCCCCGGCTATTCCGGGTAATGTTGACCAGTCC
AATGTAAATTCCACGTGCAATCGGCAACATGTCGACTGATAACT

BO06687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10757-PA 615 mRpS18B-RA 1..612 630..19 3060 100 Minus
CG10757-PB 615 mRpS18B-RB 1..612 630..19 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 761 CG10757-RB 105..716 630..19 3060 100 Minus
mRpS18B-RA 863 CG10757-RA 105..716 630..19 3060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20096476..20096804 19..347 1645 100 Plus
2L 23513712 2L 20096865..20097149 346..630 1425 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:07:36 has no hits.

BO06687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:45 Download gff for BO06687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PA 1..615 15..630 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:59 Download gff for BO06687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PB 1..615 15..630 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:37 Download gff for BO06687.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..719 15..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:15 Download gff for BO06687.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..719 15..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:15 Download gff for BO06687.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20096473..20096803 15..346 99 <- Plus
2L 20096866..20097158 347..639 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:37 Download gff for BO06687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20096473..20096803 15..346 99 <- Plus
arm_2L 20096866..20097158 347..639 98   Plus

BO06687.5prime Sequence

644 bp (643 high quality bases) assembled on 2005-12-03

> BO06687.5prime
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTGCAAGCTTTCTAGACC

BO06687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10757-PA 615 mRpS18B-RA 1..612 17..628 3060 100 Plus
CG10757-PB 615 mRpS18B-RB 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 761 CG10757-RB 105..716 17..628 3060 100 Plus
mRpS18B-RA 863 CG10757-RA 105..716 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20096476..20096804 628..300 1645 100 Minus
2L 23513712 2L 20096865..20097149 301..17 1425 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:19:07 has no hits.

BO06687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:46 Download gff for BO06687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PA 1..615 17..632 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:00 Download gff for BO06687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10757-PB 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:42 Download gff for BO06687.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..719 8..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:18 Download gff for BO06687.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 96..719 8..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:18 Download gff for BO06687.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20096473..20096803 301..632 99 <- Minus
2L 20096866..20097158 8..300 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:42 Download gff for BO06687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20096473..20096803 301..632 99 <- Minus
arm_2L 20096866..20097158 8..300 98   Minus

BO06687.complete Sequence

646 bp (646 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630493

> BO06687.complete
GAAGTTATCAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGAC
TGGTCAACATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCC
TTGAGATGCAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCAC
CGAAGGCGAAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGG
ATCGCAGCAAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGC
GCCGCTTACAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCG
GCGCAACCACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCA
TCCGCCAGAACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGAT
GAATACCTGGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCAT
ATCGCCCCACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTC
AAAAGAGCCACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCC
GGGTACCTAACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTA
CTACGGCCAGGAGCAGAAGCAGAAAGCTGCAAGCTTTCTAGACCAT

BO06687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 615 CG10757-PB 1..612 17..628 3060 100 Plus
mRpS18B-RA 615 CG10757-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-RB 761 CG10757-RB 105..716 17..628 3060 100 Plus
mRpS18B-RA 863 CG10757-RA 105..716 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20096476..20096804 628..300 1645 100 Minus
2L 23513712 2L 20096865..20097149 301..17 1425 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:33:20 has no hits.

BO06687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:18 Download gff for BO06687.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RB 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:50 Download gff for BO06687.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RB 89..712 8..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:45 Download gff for BO06687.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 110..716 22..630 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:18 Download gff for BO06687.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RB 89..712 8..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:56 Download gff for BO06687.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18B-RA 110..716 22..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:56 Download gff for BO06687.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20096474..20096803 301..630 99 <- Minus
2L 20096866..20097144 22..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:45 Download gff for BO06687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20096474..20096803 301..630 99 <- Minus
arm_2L 20096866..20097144 22..300 100   Minus

BO06687.pep Sequence

Translation from 16 to 646

> BO06687.pep
MLPIARGIYIGLVNITRNSRGALHTASALRCKAETSTEENNAAATEGEGE
DNASGSAPDPKDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKG
MYAPRKTRKTCIRQNRISTGNPCPICRDEYLVLDYRNTELLEQFISPHSG
DVLSYSKTGLCQKSHLRLMVAVQQARDSGYLTYDVPFREYDYSEYYGQEQ
KQKAASFLDH

BO06687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18B-PB 204 CG10757-PB 1..204 1..204 1079 100 Plus
mRpS18B-PA 204 CG10757-PA 1..204 1..204 1079 100 Plus