Clone Sequence Records
BO06690.3prime Sequence
845 bp (844 high quality bases) assembled on 2005-12-03
> BO06690.3prime
ATGGTCTAGAAAGCTTGCGATGCCAGTGTTAGTCTTGATCCAGTCCAGGT
AGCTGGTCACACGAGTGAAGGCAGCGGGGTAGCCCTTCTCGCAACCGGCA
GAGGCACCGAATGAGGTCAGACCGATCTGCTCGCTGGACGACTTGAGGAC
CAGAGGACCGCCGGAGTCACCGTTGCAGGTGGACTTGGCGTCGGTGGTGG
CCACGCAGAGGGTTGAGTCGGTCACGACCGAGGTGCCGTAGGTTTGGGCG
CACTTGGTGTTGGTGATCACAGTCAGGTCGACATACTGAAGATTGGTAGC
CACACCACTGGAGGTGTCACTGGTGCGTCCCCATCCGGAGGCGACAGCGA
CGTCACCGACGAAGGTCGAGTAGGAGTTGGAGATGCTTGGCAGCTTGACG
GCGGAGATCCTGCTGCTGGAGGAGGTGGCGGGGATCTTGATCAGGGAGAT
GTCGTTGCGCAGGTTAGCGCTGTTCCAGCCGGAGTGGATGATGATGTCGG
AGCTGGACACGGTGTGGGTGATCTCGGCGGAGGTGCGCACGGTGGCGCCC
AAGTAGACGGTCACGGACTGAACTCCATCGGTACAGTGAGCAGCGGTCAG
GACCCAGGTGCTGCCGATCAGAGAACCACCGCACCAGGCGCTGGACAGAG
CACTCAGCTTCAGGGAAAGTCCCACCTGGTAGGGGAACTGGCCGACGGCG
GCGTTGCTTCCTCCGGTGATGCGACCTCCAATGTCGCCAACGACGGGCAT
CTCGCGGCTGCGATGGCGCAGCTCCGGCTCGGGGAAAGCGGAGGCGGCCA
CAGCCAGGGCAAGGATGATCAGGAACTTCATGTCGACTGATAACT
BO06690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6467-PA | 816 | Jon65Aiv-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
CG6483-PA | 825 | Jon65Aiii-RA | 765..809 | 70..26 | 150 | 93.3 | Minus |
CG6298-PA | 1239 | Jon74E-RA | 1075..1109 | 180..146 | 150 | 97.1 | Minus |
CG6457-PA | 813 | yip7-RA | 144..171 | 694..667 | 140 | 100 | Minus |
CG10472-PA | 873 | CG10472-RA | 688..725 | 183..146 | 140 | 94.7 | Minus |
CG10477-PA | 819 | CG10477-RA | 374..400 | 461..435 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 904 | CG6467-RA | 42..854 | 831..19 | 4065 | 100 | Minus |
Jon74E-RA | 1452 | CG6298-RA | 1155..1305 | 184..34 | 335 | 82.2 | Minus |
Jon99Ciii-RB | 1240 | CG31362-RB | 210..407 | 636..439 | 240 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6039529..6040085 | 575..19 | 2785 | 100 | Minus |
3L | 28110227 | 3L | 6039196..6039452 | 831..575 | 1285 | 100 | Minus |
3L | 28110227 | 3L | 17546886..17547036 | 34..184 | 335 | 81.5 | Plus |
3L | 28110227 | 3L | 6051486..6051648 | 184..22 | 215 | 75.5 | Minus |
3R | 32079331 | 3R | 29922425..29922622 | 636..439 | 210 | 73.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:42:31 has no hits.
BO06690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:51 Download gff for
BO06690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:07 Download gff for
BO06690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:15 Download gff for
BO06690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..854 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:32 Download gff for
BO06690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..854 | 19..831 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:32 Download gff for
BO06690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6039196..6039452 | 575..831 | 100 | -> | Minus |
3L | 6039530..6040085 | 19..574 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:15 Download gff for
BO06690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6032296..6032552 | 575..831 | 100 | -> | Minus |
arm_3L | 6032630..6033185 | 19..574 | 100 | | Minus |
BO06690.5prime Sequence
845 bp (807 high quality bases) assembled on 2005-12-03
> BO06690.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGATNCAGACTAACACTGGCATCGCAAGCTTTCTAGACC
BO06690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6467-PA | 816 | Jon65Aiv-RA | 1..813 | 17..829 | 4021 | 99.7 | Plus |
CG6298-PA | 1239 | Jon74E-RA | 1075..1109 | 668..702 | 150 | 97.1 | Plus |
CG6457-PA | 813 | yip7-RA | 144..171 | 154..181 | 140 | 100 | Plus |
CG10472-PA | 873 | CG10472-RA | 688..725 | 665..702 | 140 | 94.7 | Plus |
CG10477-PA | 819 | CG10477-RA | 374..400 | 387..413 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 904 | CG6467-RA | 42..854 | 17..829 | 4039 | 99.8 | Plus |
Jon74E-RA | 1452 | CG6298-RA | 1155..1301 | 664..810 | 315 | 81.8 | Plus |
Jon99Ciii-RB | 1240 | CG31362-RB | 210..407 | 212..409 | 240 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6039529..6040085 | 273..829 | 2759 | 99.6 | Plus |
3L | 28110227 | 3L | 6039196..6039452 | 17..273 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 17546890..17547036 | 810..664 | 315 | 81 | Minus |
3R | 32079331 | 3R | 29922425..29922622 | 212..409 | 210 | 73.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:47:25 has no hits.
BO06690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:52 Download gff for
BO06690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:09 Download gff for
BO06690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6467-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:47 Download gff for
BO06690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..854 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:08 Download gff for
BO06690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..854 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:08 Download gff for
BO06690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6039196..6039452 | 17..273 | 100 | -> | Plus |
3L | 6039530..6040085 | 274..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:47 Download gff for
BO06690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6032296..6032552 | 17..273 | 100 | -> | Plus |
arm_3L | 6032630..6033185 | 274..829 | 99 | | Plus |
BO06690.complete Sequence
847 bp (847 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630494
> BO06690.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGATCAAGACTAACACTGGCATCGCAAGCTTTCTAGACCAT
BO06690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 816 | CG6467-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Jon74E-RA | 1239 | CG6298-PA | 1071..1221 | 664..814 | 335 | 81.5 | Plus |
Jon65Aiii-RA | 825 | CG6483-PA | 651..813 | 664..826 | 215 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-RA | 904 | CG6467-RA | 42..854 | 17..829 | 4065 | 100 | Plus |
Jon74E-RA | 1452 | CG6298-RA | 1155..1305 | 664..814 | 335 | 81.5 | Plus |
Jon65Aiii-RA | 875 | CG6483-RA | 671..833 | 664..826 | 215 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6039529..6040085 | 273..829 | 2785 | 100 | Plus |
3L | 28110227 | 3L | 6039196..6039452 | 17..273 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 17546886..17547036 | 814..664 | 335 | 81.5 | Minus |
3L | 28110227 | 3L | 6051486..6051648 | 664..826 | 215 | 75.5 | Plus |
3R | 32079331 | 3R | 29922425..29922622 | 212..409 | 210 | 73.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:07:04 has no hits.
BO06690.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:53 Download gff for
BO06690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:25 Download gff for
BO06690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 40..852 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:58 Download gff for
BO06690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..854 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:54 Download gff for
BO06690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 40..852 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:16 Download gff for
BO06690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Aiv-RA | 42..854 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:16 Download gff for
BO06690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6039196..6039452 | 17..273 | 100 | -> | Plus |
3L | 6039530..6040085 | 274..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:58 Download gff for
BO06690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6032296..6032552 | 17..273 | 100 | -> | Plus |
arm_3L | 6032630..6033185 | 274..831 | 99 | | Plus |
BO06690.pep Sequence
Translation from 16 to 847
> BO06690.pep
MKFLIILALAVAASAFPEPELRHRSREMPVVGDIGGRITGGSNAAVGQFP
YQVGLSLKLSALSSAWCGGSLIGSTWVLTAAHCTDGVQSVTVYLGATVRT
SAEITHTVSSSDIIIHSGWNSANLRNDISLIKIPATSSSSRISAVKLPSI
SNSYSTFVGDVAVASGWGRTSDTSSGVATNLQYVDLTVITNTKCAQTYGT
SVVTDSTLCVATTDAKSTCNGDSGGPLVLKSSSEQIGLTSFGASAGCEKG
YPAAFTRVTSYLDWIKTNTGIASFLDH
BO06690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Aiv-PA | 271 | CG6467-PA | 1..271 | 1..271 | 1375 | 100 | Plus |
Jon65Aiii-PA | 274 | CG6483-PA | 1..273 | 1..272 | 784 | 56 | Plus |
CG10477-PB | 272 | CG10477-PB | 6..270 | 4..271 | 767 | 56 | Plus |
CG10477-PA | 272 | CG10477-PA | 6..270 | 4..271 | 767 | 56 | Plus |
yip7-PA | 270 | CG6457-PA | 1..270 | 1..271 | 736 | 55.3 | Plus |