Clone BO06690 Report

Search the DGRC for BO06690

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptJon65Aiv-RA
Protein status:BO06690.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO06690.3prime Sequence

845 bp (844 high quality bases) assembled on 2005-12-03

> BO06690.3prime
ATGGTCTAGAAAGCTTGCGATGCCAGTGTTAGTCTTGATCCAGTCCAGGT
AGCTGGTCACACGAGTGAAGGCAGCGGGGTAGCCCTTCTCGCAACCGGCA
GAGGCACCGAATGAGGTCAGACCGATCTGCTCGCTGGACGACTTGAGGAC
CAGAGGACCGCCGGAGTCACCGTTGCAGGTGGACTTGGCGTCGGTGGTGG
CCACGCAGAGGGTTGAGTCGGTCACGACCGAGGTGCCGTAGGTTTGGGCG
CACTTGGTGTTGGTGATCACAGTCAGGTCGACATACTGAAGATTGGTAGC
CACACCACTGGAGGTGTCACTGGTGCGTCCCCATCCGGAGGCGACAGCGA
CGTCACCGACGAAGGTCGAGTAGGAGTTGGAGATGCTTGGCAGCTTGACG
GCGGAGATCCTGCTGCTGGAGGAGGTGGCGGGGATCTTGATCAGGGAGAT
GTCGTTGCGCAGGTTAGCGCTGTTCCAGCCGGAGTGGATGATGATGTCGG
AGCTGGACACGGTGTGGGTGATCTCGGCGGAGGTGCGCACGGTGGCGCCC
AAGTAGACGGTCACGGACTGAACTCCATCGGTACAGTGAGCAGCGGTCAG
GACCCAGGTGCTGCCGATCAGAGAACCACCGCACCAGGCGCTGGACAGAG
CACTCAGCTTCAGGGAAAGTCCCACCTGGTAGGGGAACTGGCCGACGGCG
GCGTTGCTTCCTCCGGTGATGCGACCTCCAATGTCGCCAACGACGGGCAT
CTCGCGGCTGCGATGGCGCAGCTCCGGCTCGGGGAAAGCGGAGGCGGCCA
CAGCCAGGGCAAGGATGATCAGGAACTTCATGTCGACTGATAACT

BO06690.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6467-PA 816 Jon65Aiv-RA 1..813 831..19 4065 100 Minus
CG6483-PA 825 Jon65Aiii-RA 765..809 70..26 150 93.3 Minus
CG6298-PA 1239 Jon74E-RA 1075..1109 180..146 150 97.1 Minus
CG6457-PA 813 yip7-RA 144..171 694..667 140 100 Minus
CG10472-PA 873 CG10472-RA 688..725 183..146 140 94.7 Minus
CG10477-PA 819 CG10477-RA 374..400 461..435 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 904 CG6467-RA 42..854 831..19 4065 100 Minus
Jon74E-RA 1452 CG6298-RA 1155..1305 184..34 335 82.2 Minus
Jon99Ciii-RB 1240 CG31362-RB 210..407 636..439 240 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6039529..6040085 575..19 2785 100 Minus
3L 28110227 3L 6039196..6039452 831..575 1285 100 Minus
3L 28110227 3L 17546886..17547036 34..184 335 81.5 Plus
3L 28110227 3L 6051486..6051648 184..22 215 75.5 Minus
3R 32079331 3R 29922425..29922622 636..439 210 73.7 Minus
Blast to na_te.dros performed on 2015-02-12 15:42:31 has no hits.

BO06690.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:51 Download gff for BO06690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 18..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:07 Download gff for BO06690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 18..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:15 Download gff for BO06690.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..854 19..831 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:32 Download gff for BO06690.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..854 19..831 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:32 Download gff for BO06690.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6039196..6039452 575..831 100 -> Minus
3L 6039530..6040085 19..574 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:15 Download gff for BO06690.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6032296..6032552 575..831 100 -> Minus
arm_3L 6032630..6033185 19..574 100   Minus

BO06690.5prime Sequence

845 bp (807 high quality bases) assembled on 2005-12-03

> BO06690.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGATNCAGACTAACACTGGCATCGCAAGCTTTCTAGACC

BO06690.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6467-PA 816 Jon65Aiv-RA 1..813 17..829 4021 99.7 Plus
CG6298-PA 1239 Jon74E-RA 1075..1109 668..702 150 97.1 Plus
CG6457-PA 813 yip7-RA 144..171 154..181 140 100 Plus
CG10472-PA 873 CG10472-RA 688..725 665..702 140 94.7 Plus
CG10477-PA 819 CG10477-RA 374..400 387..413 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 904 CG6467-RA 42..854 17..829 4039 99.8 Plus
Jon74E-RA 1452 CG6298-RA 1155..1301 664..810 315 81.8 Plus
Jon99Ciii-RB 1240 CG31362-RB 210..407 212..409 240 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6039529..6040085 273..829 2759 99.6 Plus
3L 28110227 3L 6039196..6039452 17..273 1285 100 Plus
3L 28110227 3L 17546890..17547036 810..664 315 81 Minus
3R 32079331 3R 29922425..29922622 212..409 210 73.7 Plus
Blast to na_te.dros performed on 2015-02-12 09:47:25 has no hits.

BO06690.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:52 Download gff for BO06690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:09 Download gff for BO06690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6467-PA 1..816 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:47 Download gff for BO06690.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..854 17..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:08 Download gff for BO06690.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..854 17..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:08 Download gff for BO06690.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6039196..6039452 17..273 100 -> Plus
3L 6039530..6040085 274..829 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:47 Download gff for BO06690.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6032296..6032552 17..273 100 -> Plus
arm_3L 6032630..6033185 274..829 99   Plus

BO06690.complete Sequence

847 bp (847 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630494

> BO06690.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGG
CCGCCTCCGCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATG
CCCGTCGTTGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGC
CGTCGGCCAGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTC
TGTCCAGCGCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTG
ACCGCTGCTCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGG
CGCCACCGTGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCG
ACATCATCATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATC
TCCCTGATCAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGT
CAAGCTGCCAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCG
CTGTCGCCTCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCT
ACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGC
CCAAACCTACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCA
CCACCGACGCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTC
CTCAAGTCGTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGC
CGGTTGCGAGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACC
TGGACTGGATCAAGACTAACACTGGCATCGCAAGCTTTCTAGACCAT

BO06690.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 816 CG6467-PA 1..813 17..829 4065 100 Plus
Jon74E-RA 1239 CG6298-PA 1071..1221 664..814 335 81.5 Plus
Jon65Aiii-RA 825 CG6483-PA 651..813 664..826 215 75.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-RA 904 CG6467-RA 42..854 17..829 4065 100 Plus
Jon74E-RA 1452 CG6298-RA 1155..1305 664..814 335 81.5 Plus
Jon65Aiii-RA 875 CG6483-RA 671..833 664..826 215 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6039529..6040085 273..829 2785 100 Plus
3L 28110227 3L 6039196..6039452 17..273 1285 100 Plus
3L 28110227 3L 17546886..17547036 814..664 335 81.5 Minus
3L 28110227 3L 6051486..6051648 664..826 215 75.5 Plus
3R 32079331 3R 29922425..29922622 212..409 210 73.7 Plus
Blast to na_te.dros performed on 2014-11-27 13:07:04 has no hits.

BO06690.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:53 Download gff for BO06690.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 1..816 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:25 Download gff for BO06690.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 40..852 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:58 Download gff for BO06690.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..854 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:54 Download gff for BO06690.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 40..852 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:16 Download gff for BO06690.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Aiv-RA 42..854 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:16 Download gff for BO06690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6039196..6039452 17..273 100 -> Plus
3L 6039530..6040085 274..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:58 Download gff for BO06690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6032296..6032552 17..273 100 -> Plus
arm_3L 6032630..6033185 274..831 99   Plus

BO06690.pep Sequence

Translation from 16 to 847

> BO06690.pep
MKFLIILALAVAASAFPEPELRHRSREMPVVGDIGGRITGGSNAAVGQFP
YQVGLSLKLSALSSAWCGGSLIGSTWVLTAAHCTDGVQSVTVYLGATVRT
SAEITHTVSSSDIIIHSGWNSANLRNDISLIKIPATSSSSRISAVKLPSI
SNSYSTFVGDVAVASGWGRTSDTSSGVATNLQYVDLTVITNTKCAQTYGT
SVVTDSTLCVATTDAKSTCNGDSGGPLVLKSSSEQIGLTSFGASAGCEKG
YPAAFTRVTSYLDWIKTNTGIASFLDH

BO06690.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Aiv-PA 271 CG6467-PA 1..271 1..271 1375 100 Plus
Jon65Aiii-PA 274 CG6483-PA 1..273 1..272 784 56 Plus
CG10477-PB 272 CG10477-PB 6..270 4..271 767 56 Plus
CG10477-PA 272 CG10477-PA 6..270 4..271 767 56 Plus
yip7-PA 270 CG6457-PA 1..270 1..271 736 55.3 Plus