Clone Sequence Records
BO06691.3prime Sequence
850 bp (754 high quality bases) assembled on 2005-12-03
> BO06691.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGTAGCCCTCCAGTGGGGAGCCTTCGT
CTAGATCTCTGAGAATGCCCTTGAAATATTTAACGGTCTTAACTCTCAGC
TCCAAAGTGGCATCCTCGTCGCAGATCATCAGGGTATTTGCATGCTGCTG
GAAGGCACTGACGGTCCACATGTGATTCACACCCTCCTCGATGGCCTTGT
ACAGGGCAAATGCCTTGTGAGCTCCGGTGATGAGGATCATCACCTCCTTG
GAGTCCATCACAGTGCCAACGCCCACGGTTAAAGCCTGTTTGGGCACCTT
GCTCATATCGTTGTCAAAGAAACGGGCATTCGCTTCAAGTGTATCCTGCG
CCAGAGTTTTCACCCGCGTTCGGGACACCAATGAGGAGCCGGGCTCATTG
AAGGCAATATGGCCATCGGGTCCGATGCCACCGATGAACAGCTCCACTCC
TCCAGCCTCGCGGATCTGATCCTCGAACTTATTGCACTCGGCCACCAGAT
CAGCTGCATTGCCATCCAAAATGTGCACATTCTTGGGCTCAATGTCGATG
TGCTTGAAGAAGTTGTTCCACATGAAGTAGTGATAGCTCTCATGGTGATC
TCTGGCCAGTCCCACATACTCATCCATATTGAAGGTTTTCACATACTGAA
AGGATACCTTGCCCTGCTTATGAAACTCGATCAGTTCTTTGTACATTCCC
AATGGCGTAGATCCCGTGGGCAGGCCCAAAACGAAGTATCTGTCGGCACT
CGGCTGAAAGTCATTGATGCGTTTCATCACATATTTGGCCGCCCACTTGC
CCACCGAGTCGCTGGTTTCAAGATGACCAATCTCATGTCGACTGATAACT
BO06691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6957-PA | 822 | Oscillin-RA | 19..819 | 819..19 | 4005 | 100 | Minus |
CG6957-PB | 822 | Oscillin-RB | 19..819 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 1299 | CG6957-RH | 218..1036 | 836..19 | 4070 | 99.9 | Minus |
Oscillin-RF | 1388 | CG6957-RF | 218..1036 | 836..19 | 4070 | 99.9 | Minus |
Oscillin-RC | 1206 | CG6957-RC | 208..1026 | 836..19 | 4070 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5548167..5548710 | 612..69 | 2720 | 100 | Minus |
2L | 23513712 | 2L | 5547971..5548101 | 741..611 | 655 | 100 | Minus |
2L | 23513712 | 2L | 5547815..5547912 | 836..740 | 440 | 99 | Minus |
2L | 23513712 | 2L | 5549015..5549067 | 71..19 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:19:27 has no hits.
BO06691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:53 Download gff for
BO06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PA | 1..822 | 16..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:10 Download gff for
BO06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PB | 1..822 | 16..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:00 Download gff for
BO06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1026 | 19..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:46 Download gff for
BO06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1026 | 19..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:46 Download gff for
BO06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5547804..5547912 | 740..845 | 95 | -> | Minus |
2L | 5547973..5548100 | 612..739 | 100 | -> | Minus |
2L | 5548168..5548709 | 70..611 | 100 | -> | Minus |
2L | 5549017..5549067 | 19..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:00 Download gff for
BO06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5547804..5547912 | 740..845 | 95 | -> | Minus |
arm_2L | 5547973..5548100 | 612..739 | 100 | -> | Minus |
arm_2L | 5548168..5548709 | 70..611 | 100 | -> | Minus |
arm_2L | 5549017..5549067 | 19..69 | 100 | | Minus |
BO06691.5prime Sequence
851 bp (803 high quality bases) assembled on 2005-12-03
> BO06691.5prime
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAAGCTCCCCACTGGAGGGCTACAAAAAACGCAGCTTTCTAGAC
C
BO06691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6957-PA | 822 | Oscillin-RA | 1..818 | 17..834 | 4065 | 99.8 | Plus |
CG6957-PB | 822 | Oscillin-RB | 1..818 | 17..834 | 4065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 1299 | CG6957-RH | 218..1035 | 17..834 | 4075 | 99.9 | Plus |
Oscillin-RF | 1388 | CG6957-RF | 218..1035 | 17..834 | 4075 | 99.9 | Plus |
Oscillin-RC | 1206 | CG6957-RC | 208..1025 | 17..834 | 4075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5548167..5548710 | 242..785 | 2720 | 100 | Plus |
2L | 23513712 | 2L | 5547971..5548101 | 113..243 | 655 | 100 | Plus |
2L | 23513712 | 2L | 5547815..5547912 | 17..114 | 490 | 100 | Plus |
2L | 23513712 | 2L | 5549015..5549066 | 783..834 | 245 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:21:25 has no hits.
BO06691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:54 Download gff for
BO06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PA | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:12 Download gff for
BO06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6957-PB | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:06 Download gff for
BO06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1025 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:09 Download gff for
BO06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1025 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:09 Download gff for
BO06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5547804..5547912 | 8..114 | 96 | -> | Plus |
2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
2L | 5549017..5549066 | 785..834 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:06 Download gff for
BO06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5547804..5547912 | 8..114 | 96 | -> | Plus |
arm_2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
arm_2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
arm_2L | 5549017..5549066 | 785..834 | 98 | | Plus |
BO06691.complete Sequence
853 bp (853 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630495
> BO06691.complete
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAGGCTCCCCACTGGAGGGCTACAAAAACGCAAGCTTTCTAGAC
CAT
BO06691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 822 | CG6957-PH | 1..819 | 17..835 | 4095 | 100 | Plus |
Oscillin-RF | 822 | CG6957-PF | 1..819 | 17..835 | 4095 | 100 | Plus |
Oscillin-RC | 822 | CG6957-PC | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-RH | 1299 | CG6957-RH | 218..1036 | 17..835 | 4095 | 100 | Plus |
Oscillin-RF | 1388 | CG6957-RF | 218..1036 | 17..835 | 4095 | 100 | Plus |
Oscillin-RC | 1206 | CG6957-RC | 208..1026 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5548167..5548710 | 242..785 | 2720 | 100 | Plus |
2L | 23513712 | 2L | 5547971..5548101 | 113..243 | 655 | 100 | Plus |
2L | 23513712 | 2L | 5547815..5547912 | 17..114 | 490 | 100 | Plus |
2L | 23513712 | 2L | 5549015..5549067 | 783..835 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:48:18 has no hits.
BO06691.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:55 Download gff for
BO06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RB | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:26 Download gff for
BO06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RB | 545..1374 | 8..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:17 Download gff for
BO06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1026 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:55 Download gff for
BO06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RB | 545..1374 | 8..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:53 Download gff for
BO06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscillin-RC | 208..1026 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:53 Download gff for
BO06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
2L | 5547815..5547912 | 17..114 | 100 | -> | Plus |
2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
2L | 5549017..5549067 | 785..837 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:17 Download gff for
BO06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5547815..5547912 | 17..114 | 100 | -> | Plus |
arm_2L | 5547973..5548100 | 115..242 | 100 | -> | Plus |
arm_2L | 5548168..5548709 | 243..784 | 100 | -> | Plus |
arm_2L | 5549017..5549067 | 785..837 | 96 | | Plus |
BO06691.pep Sequence
Translation from 16 to 853
> BO06691.pep
MRLVILETSDSVGKWAAKYVMKRINDFQPSADRYFVLGLPTGSTPLGMYK
ELIEFHKQGKVSFQYVKTFNMDEYVGLARDHHESYHYFMWNNFFKHIDIE
PKNVHILDGNAADLVAECNKFEDQIREAGGVELFIGGIGPDGHIAFNEPG
SSLVSRTRVKTLAQDTLEANARFFDNDMSKVPKQALTVGVGTVMDSKEVM
ILITGAHKAFALYKAIEEGVNHMWTVSAFQQHANTLMICDEDATLELRVK
TVKYFKGILRDLDEGSPLEGYKNASFLDH
BO06691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscillin-PH | 273 | CG6957-PH | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PF | 273 | CG6957-PF | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PC | 273 | CG6957-PC | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PB | 273 | CG6957-PB | 1..273 | 1..273 | 1434 | 100 | Plus |
Oscillin-PA | 273 | CG6957-PA | 1..273 | 1..273 | 1434 | 100 | Plus |