Clone BO06691 Report

Search the DGRC for BO06691

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptOscillin-RA
Protein status:BO06691.pep: validated full length
Sequenced Size:853

Clone Sequence Records

BO06691.3prime Sequence

850 bp (754 high quality bases) assembled on 2005-12-03

> BO06691.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGTAGCCCTCCAGTGGGGAGCCTTCGT
CTAGATCTCTGAGAATGCCCTTGAAATATTTAACGGTCTTAACTCTCAGC
TCCAAAGTGGCATCCTCGTCGCAGATCATCAGGGTATTTGCATGCTGCTG
GAAGGCACTGACGGTCCACATGTGATTCACACCCTCCTCGATGGCCTTGT
ACAGGGCAAATGCCTTGTGAGCTCCGGTGATGAGGATCATCACCTCCTTG
GAGTCCATCACAGTGCCAACGCCCACGGTTAAAGCCTGTTTGGGCACCTT
GCTCATATCGTTGTCAAAGAAACGGGCATTCGCTTCAAGTGTATCCTGCG
CCAGAGTTTTCACCCGCGTTCGGGACACCAATGAGGAGCCGGGCTCATTG
AAGGCAATATGGCCATCGGGTCCGATGCCACCGATGAACAGCTCCACTCC
TCCAGCCTCGCGGATCTGATCCTCGAACTTATTGCACTCGGCCACCAGAT
CAGCTGCATTGCCATCCAAAATGTGCACATTCTTGGGCTCAATGTCGATG
TGCTTGAAGAAGTTGTTCCACATGAAGTAGTGATAGCTCTCATGGTGATC
TCTGGCCAGTCCCACATACTCATCCATATTGAAGGTTTTCACATACTGAA
AGGATACCTTGCCCTGCTTATGAAACTCGATCAGTTCTTTGTACATTCCC
AATGGCGTAGATCCCGTGGGCAGGCCCAAAACGAAGTATCTGTCGGCACT
CGGCTGAAAGTCATTGATGCGTTTCATCACATATTTGGCCGCCCACTTGC
CCACCGAGTCGCTGGTTTCAAGATGACCAATCTCATGTCGACTGATAACT

BO06691.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6957-PA 822 Oscillin-RA 19..819 819..19 4005 100 Minus
CG6957-PB 822 Oscillin-RB 19..819 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 1299 CG6957-RH 218..1036 836..19 4070 99.9 Minus
Oscillin-RF 1388 CG6957-RF 218..1036 836..19 4070 99.9 Minus
Oscillin-RC 1206 CG6957-RC 208..1026 836..19 4070 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5548167..5548710 612..69 2720 100 Minus
2L 23513712 2L 5547971..5548101 741..611 655 100 Minus
2L 23513712 2L 5547815..5547912 836..740 440 99 Minus
2L 23513712 2L 5549015..5549067 71..19 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:19:27 has no hits.

BO06691.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:53 Download gff for BO06691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PA 1..822 16..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:10 Download gff for BO06691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PB 1..822 16..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:00 Download gff for BO06691.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1026 19..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:46 Download gff for BO06691.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1026 19..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:46 Download gff for BO06691.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5547804..5547912 740..845 95 -> Minus
2L 5547973..5548100 612..739 100 -> Minus
2L 5548168..5548709 70..611 100 -> Minus
2L 5549017..5549067 19..69 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:00 Download gff for BO06691.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5547804..5547912 740..845 95 -> Minus
arm_2L 5547973..5548100 612..739 100 -> Minus
arm_2L 5548168..5548709 70..611 100 -> Minus
arm_2L 5549017..5549067 19..69 100   Minus

BO06691.5prime Sequence

851 bp (803 high quality bases) assembled on 2005-12-03

> BO06691.5prime
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAAGCTCCCCACTGGAGGGCTACAAAAAACGCAGCTTTCTAGAC
C

BO06691.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6957-PA 822 Oscillin-RA 1..818 17..834 4065 99.8 Plus
CG6957-PB 822 Oscillin-RB 1..818 17..834 4065 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 1299 CG6957-RH 218..1035 17..834 4075 99.9 Plus
Oscillin-RF 1388 CG6957-RF 218..1035 17..834 4075 99.9 Plus
Oscillin-RC 1206 CG6957-RC 208..1025 17..834 4075 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5548167..5548710 242..785 2720 100 Plus
2L 23513712 2L 5547971..5548101 113..243 655 100 Plus
2L 23513712 2L 5547815..5547912 17..114 490 100 Plus
2L 23513712 2L 5549015..5549066 783..834 245 98.1 Plus
Blast to na_te.dros performed on 2015-02-13 05:21:25 has no hits.

BO06691.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:54 Download gff for BO06691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PA 1..822 17..839 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:12 Download gff for BO06691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-PB 1..822 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:06 Download gff for BO06691.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1025 17..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:09 Download gff for BO06691.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1025 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:09 Download gff for BO06691.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5547804..5547912 8..114 96 -> Plus
2L 5547973..5548100 115..242 100 -> Plus
2L 5548168..5548709 243..784 100 -> Plus
2L 5549017..5549066 785..834 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:06 Download gff for BO06691.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5547804..5547912 8..114 96 -> Plus
arm_2L 5547973..5548100 115..242 100 -> Plus
arm_2L 5548168..5548709 243..784 100 -> Plus
arm_2L 5549017..5549066 785..834 98   Plus

BO06691.complete Sequence

853 bp (853 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630495

> BO06691.complete
GAAGTTATCAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGG
TGGGCAAGTGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAG
CCGAGTGCCGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCC
ATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT
CCTTTCAGTATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCC
AGAGATCACCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAA
GCACATCGACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAG
CTGATCTGGTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCT
GGAGGAGTGGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGC
CTTCAATGAGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTC
TGGCGCAGGATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATG
AGCAAGGTGCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGA
CTCCAAGGAGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCC
TGTACAAGGCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCC
TTCCAGCAGCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTT
GGAGCTGAGAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATC
TAGACGAAGGCTCCCCACTGGAGGGCTACAAAAACGCAAGCTTTCTAGAC
CAT

BO06691.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 822 CG6957-PH 1..819 17..835 4095 100 Plus
Oscillin-RF 822 CG6957-PF 1..819 17..835 4095 100 Plus
Oscillin-RC 822 CG6957-PC 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 1299 CG6957-RH 218..1036 17..835 4095 100 Plus
Oscillin-RF 1388 CG6957-RF 218..1036 17..835 4095 100 Plus
Oscillin-RC 1206 CG6957-RC 208..1026 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5548167..5548710 242..785 2720 100 Plus
2L 23513712 2L 5547971..5548101 113..243 655 100 Plus
2L 23513712 2L 5547815..5547912 17..114 490 100 Plus
2L 23513712 2L 5549015..5549067 783..835 265 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:48:18 has no hits.

BO06691.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:55 Download gff for BO06691.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RB 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:26 Download gff for BO06691.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RB 545..1374 8..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:17 Download gff for BO06691.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1026 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:55 Download gff for BO06691.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RB 545..1374 8..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:53 Download gff for BO06691.complete
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1026 17..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:53 Download gff for BO06691.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5547973..5548100 115..242 100 -> Plus
2L 5547815..5547912 17..114 100 -> Plus
2L 5548168..5548709 243..784 100 -> Plus
2L 5549017..5549067 785..837 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:17 Download gff for BO06691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5547815..5547912 17..114 100 -> Plus
arm_2L 5547973..5548100 115..242 100 -> Plus
arm_2L 5548168..5548709 243..784 100 -> Plus
arm_2L 5549017..5549067 785..837 96   Plus

BO06691.pep Sequence

Translation from 16 to 853

> BO06691.pep
MRLVILETSDSVGKWAAKYVMKRINDFQPSADRYFVLGLPTGSTPLGMYK
ELIEFHKQGKVSFQYVKTFNMDEYVGLARDHHESYHYFMWNNFFKHIDIE
PKNVHILDGNAADLVAECNKFEDQIREAGGVELFIGGIGPDGHIAFNEPG
SSLVSRTRVKTLAQDTLEANARFFDNDMSKVPKQALTVGVGTVMDSKEVM
ILITGAHKAFALYKAIEEGVNHMWTVSAFQQHANTLMICDEDATLELRVK
TVKYFKGILRDLDEGSPLEGYKNASFLDH

BO06691.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-PH 273 CG6957-PH 1..273 1..273 1434 100 Plus
Oscillin-PF 273 CG6957-PF 1..273 1..273 1434 100 Plus
Oscillin-PC 273 CG6957-PC 1..273 1..273 1434 100 Plus
Oscillin-PB 273 CG6957-PB 1..273 1..273 1434 100 Plus
Oscillin-PA 273 CG6957-PA 1..273 1..273 1434 100 Plus