Clone BO06693 Report

Search the DGRC for BO06693

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG33062-RA
Protein status:BO06693.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO06693.3prime Sequence

404 bp (403 high quality bases) assembled on 2005-12-03

> BO06693.3prime
ATGGTCTAGAAAGCTTGCGCTTTTTACCGATTTTCTGGATGGCCAACAGC
AGCAACAACGAATCGTGCAGCAAACGAGGCAGCCACAGAGAGATGAAAAG
ATAAGCAAAGATTGCGAAAATTGTATTTTCCATTGTGGCAGCGTGGTGGG
AAGGGGAAGGTGTCCGTGTCTTGGCCAAAGGATGCAGGCGGAAACAAAAG
GGAAATGCCGAAACCGTTTGCTCCATGAGTCCTCAATGGGCATCGGGGTG
CGGTGGCAACCCTTTTCGGAGAACCCTTTTCGAAAACTGGCAAGACGAAG
GGTGCACAGCCGCTCACATTCCACCCACACCCACTCTGCCAGTGGATGTG
CGGTAAGGCAGTTACAAGGTCTGAGTTTGAGTTGATCCATGTCGACTGAT
AACT

BO06693.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PA 375 CG33062-RA 1..372 390..19 1835 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 933 CG33062-RB 245..616 390..19 1845 99.7 Minus
CG33062-RA 954 CG33062-RA 266..637 390..19 1845 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19442106..19442394 19..307 1445 100 Plus
3L 28110227 3L 19446035..19446118 307..390 405 98.8 Plus
Blast to na_te.dros performed 2015-02-11 22:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 44..132 117 63.4 Plus

BO06693.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:57 Download gff for BO06693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 15..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:15 Download gff for BO06693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 15..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:06 Download gff for BO06693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..641 14..397 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:37 Download gff for BO06693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..641 14..397 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:37 Download gff for BO06693.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19442102..19442393 14..306 99 <- Plus
3L 19446035..19446124 307..397 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:06 Download gff for BO06693.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19439135..19439224 307..397 95   Plus
arm_3L 19435202..19435493 14..306 99 <- Plus

BO06693.5prime Sequence

404 bp (403 high quality bases) assembled on 2005-12-03

> BO06693.5prime
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCGCAAGCTTTCTA
GACC

BO06693.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PA 375 CG33062-RA 1..372 17..388 1835 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 933 CG33062-RB 245..616 17..388 1845 99.7 Plus
CG33062-RA 954 CG33062-RA 266..637 17..388 1845 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19442106..19442394 388..100 1445 100 Minus
3L 28110227 3L 19446035..19446118 100..17 405 98.8 Minus
Blast to na_te.dros performed 2015-02-11 16:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 363..275 117 63.4 Minus

BO06693.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:58 Download gff for BO06693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 17..392 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:17 Download gff for BO06693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-PA 1..375 17..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:26 Download gff for BO06693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..641 10..393 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:09 Download gff for BO06693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 260..641 10..393 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:09 Download gff for BO06693.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19442102..19442393 101..393 99 <- Minus
3L 19446035..19446124 10..100 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:26 Download gff for BO06693.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19435202..19435493 101..393 99 <- Minus
arm_3L 19439135..19439224 10..100 95   Minus

BO06693.complete Sequence

406 bp (406 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630496

> BO06693.complete
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCGCAAGCTTTCTA
GACCAT

BO06693.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 375 CG33062-PB 1..372 17..388 1845 99.7 Plus
CG33062-RA 375 CG33062-PA 1..372 17..388 1845 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 933 CG33062-RB 245..616 17..388 1845 99.7 Plus
CG33062-RA 954 CG33062-RA 266..637 17..388 1845 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19442106..19442394 388..100 1445 100 Minus
3L 28110227 3L 19446035..19446118 100..17 405 98.8 Minus
Blast to na_te.dros performed 2014-11-27 16:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 363..275 117 63.4 Minus

BO06693.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:07:35 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:04 Download gff for BO06693.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 266..637 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:35 Download gff for BO06693.complete
Subject Subject Range Query Range Percent Splice Strand
Ptx1-RB 1330..1351 345..367 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:27 Download gff for BO06693.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 266..637 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:27 Download gff for BO06693.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19442104..19442393 101..390 99 <- Minus
3L 19446035..19446118 17..100 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:04 Download gff for BO06693.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19435204..19435493 101..390 99 <- Minus
arm_3L 19439135..19439218 17..100 98   Minus

BO06693.pep Sequence

Translation from 16 to 406

> BO06693.pep
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKSASFLDH

BO06693.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PB 124 CG33062-PB 1..124 1..124 720 100 Plus
CG33062-PA 124 CG33062-PA 1..124 1..124 720 100 Plus