Clone Sequence Records
BO06693.3prime Sequence
404 bp (403 high quality bases) assembled on 2005-12-03
> BO06693.3prime
ATGGTCTAGAAAGCTTGCGCTTTTTACCGATTTTCTGGATGGCCAACAGC
AGCAACAACGAATCGTGCAGCAAACGAGGCAGCCACAGAGAGATGAAAAG
ATAAGCAAAGATTGCGAAAATTGTATTTTCCATTGTGGCAGCGTGGTGGG
AAGGGGAAGGTGTCCGTGTCTTGGCCAAAGGATGCAGGCGGAAACAAAAG
GGAAATGCCGAAACCGTTTGCTCCATGAGTCCTCAATGGGCATCGGGGTG
CGGTGGCAACCCTTTTCGGAGAACCCTTTTCGAAAACTGGCAAGACGAAG
GGTGCACAGCCGCTCACATTCCACCCACACCCACTCTGCCAGTGGATGTG
CGGTAAGGCAGTTACAAGGTCTGAGTTTGAGTTGATCCATGTCGACTGAT
AACT
BO06693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PA | 375 | CG33062-RA | 1..372 | 390..19 | 1835 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 933 | CG33062-RB | 245..616 | 390..19 | 1845 | 99.7 | Minus |
CG33062-RA | 954 | CG33062-RA | 266..637 | 390..19 | 1845 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19442106..19442394 | 19..307 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 19446035..19446118 | 307..390 | 405 | 98.8 | Plus |
Blast to na_te.dros performed 2015-02-11 22:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1626 | 44..132 | 117 | 63.4 | Plus |
BO06693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:57 Download gff for
BO06693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:15 Download gff for
BO06693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:06 Download gff for
BO06693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..641 | 14..397 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:37 Download gff for
BO06693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..641 | 14..397 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:37 Download gff for
BO06693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19442102..19442393 | 14..306 | 99 | <- | Plus |
3L | 19446035..19446124 | 307..397 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:06 Download gff for
BO06693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19439135..19439224 | 307..397 | 95 | | Plus |
arm_3L | 19435202..19435493 | 14..306 | 99 | <- | Plus |
BO06693.5prime Sequence
404 bp (403 high quality bases) assembled on 2005-12-03
> BO06693.5prime
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCGCAAGCTTTCTA
GACC
BO06693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PA | 375 | CG33062-RA | 1..372 | 17..388 | 1835 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 933 | CG33062-RB | 245..616 | 17..388 | 1845 | 99.7 | Plus |
CG33062-RA | 954 | CG33062-RA | 266..637 | 17..388 | 1845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19442106..19442394 | 388..100 | 1445 | 100 | Minus |
3L | 28110227 | 3L | 19446035..19446118 | 100..17 | 405 | 98.8 | Minus |
Blast to na_te.dros performed 2015-02-11 16:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1626 | 363..275 | 117 | 63.4 | Minus |
BO06693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:56:58 Download gff for
BO06693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:17 Download gff for
BO06693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:26 Download gff for
BO06693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..641 | 10..393 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:09 Download gff for
BO06693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 260..641 | 10..393 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:09 Download gff for
BO06693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19442102..19442393 | 101..393 | 99 | <- | Minus |
3L | 19446035..19446124 | 10..100 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:26 Download gff for
BO06693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19435202..19435493 | 101..393 | 99 | <- | Minus |
arm_3L | 19439135..19439224 | 10..100 | 95 | | Minus |
BO06693.complete Sequence
406 bp (406 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630496
> BO06693.complete
GAAGTTATCAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCC
TTACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTG
TGCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTG
CCACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGC
ATTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTT
CCCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTT
GCTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTT
GTTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCGCAAGCTTTCTA
GACCAT
BO06693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 375 | CG33062-PB | 1..372 | 17..388 | 1845 | 99.7 | Plus |
CG33062-RA | 375 | CG33062-PA | 1..372 | 17..388 | 1845 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-RB | 933 | CG33062-RB | 245..616 | 17..388 | 1845 | 99.7 | Plus |
CG33062-RA | 954 | CG33062-RA | 266..637 | 17..388 | 1845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19442106..19442394 | 388..100 | 1445 | 100 | Minus |
3L | 28110227 | 3L | 19446035..19446118 | 100..17 | 405 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-27 16:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1626 | 363..275 | 117 | 63.4 | Minus |
BO06693.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:07:35 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:04 Download gff for
BO06693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 266..637 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:35 Download gff for
BO06693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptx1-RB | 1330..1351 | 345..367 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:27 Download gff for
BO06693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 266..637 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:27 Download gff for
BO06693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19442104..19442393 | 101..390 | 99 | <- | Minus |
3L | 19446035..19446118 | 17..100 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:04 Download gff for
BO06693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19435204..19435493 | 101..390 | 99 | <- | Minus |
arm_3L | 19439135..19439218 | 17..100 | 98 | | Minus |
BO06693.pep Sequence
Translation from 16 to 406
> BO06693.pep
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKSASFLDH
BO06693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PB | 124 | CG33062-PB | 1..124 | 1..124 | 720 | 100 | Plus |
CG33062-PA | 124 | CG33062-PA | 1..124 | 1..124 | 720 | 100 | Plus |