Clone Sequence Records
BO06701.3prime Sequence
925 bp (865 high quality bases) assembled on 2005-12-03
> BO06701.3prime
ATGGTCTAGAAAGCTTGCATTGAAGTGAATGCCCGCTGAATTGAAAGCCA
GCAGGAGCCGCATAAAGTCGTCGATGTCCATGCTTCTCGCACGTTTTGCG
GCCATGTCCTGTTCCTCCAAGATACTTATGACCTTATCCTGCATTTTGAA
GTCGTCTTCAATCGGCTCATTCCTGAGTGAGCGGTATAGCTTGTAGTTTT
TCTCCAACATCTCCAAAACGGACGTCACCTTAAAGGTAGCCGCCAGCGTT
TTGTTCTTGCGCAGGAAGGCAATACGGGTGAGTCCGTCCCATTCGGTGAA
GTTGACCGGTGGCGGTGGGTTTTTTGGCTCCAGCCGGACCACACTGCTTT
CTACCTTTGGTGGCGGCCTAAAGTTGTTCTTGCCCACCTTCATGAGCATG
TCCACCCGGGCCAGCAGTTGGGTGTTGATACTCAGACGACAGTAGAGCTT
ATCACCCGGTTTGGCCACCAATCGTTCTGCGAACTCGCGTTGGAACATAA
GTACGGCGCAACGGAAGAGTGGTCGGTGGAGGAGCAACTTGAAGATCAGT
GGCGAACTGATCTGATACGGAACGTTGGCGATGCACAGATCGAAGAAGGG
CAGCTCCGCCTTTAGGAAGTCTCCAATCAGCACCTGGAGCTTCGGCTGCA
GCGGAGTTGCCTGCACACGCTTCTGCAACTCGGCGGCCAATCGTGTGTCA
ATCTCACAGGCGATCACTTTCTTGGCGCGCTCCAGCATCCGAACGGTCAT
GTTTCCGGTTCCAGGACCGATTTCCAGCACCACATCGGTAGCTCTCAAAG
CGGCTTTCTCCAGCATGGTGGTTATCACCAGAGGATTCTTCAGGATGTGC
TGACCAAAGTCCTTGTTGAAAACGATCCCCTGTTTTTGCACATCATTATG
AATCCGGCTCTTCTTTTCCTTCGTA
BO06701.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-PA | 921 | CG11837-RA | 12..918 | 925..19 | 4535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 1103 | CG11837-RA | 119..1025 | 925..19 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29049719..29050432 | 879..166 | 3570 | 100 | Minus |
3R | 32079331 | 3R | 29050495..29050643 | 167..19 | 745 | 100 | Minus |
3R | 32079331 | 3R | 29049611..29049658 | 925..878 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:07:46 has no hits.
BO06701.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:03 Download gff for
BO06701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 13..921 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:24 Download gff for
BO06701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 13..921 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:40 Download gff for
BO06701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 120..1030 | 11..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:16 Download gff for
BO06701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 120..1030 | 11..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:16 Download gff for
BO06701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29049612..29049657 | 879..924 | 100 | -> | Minus |
3R | 29049720..29050432 | 166..878 | 100 | -> | Minus |
3R | 29050497..29050648 | 11..165 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:40 Download gff for
BO06701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24875334..24875379 | 879..924 | 100 | -> | Minus |
arm_3R | 24875442..24876154 | 166..878 | 100 | -> | Minus |
arm_3R | 24876219..24876370 | 11..165 | 97 | | Minus |
BO06701.5prime Sequence
853 bp (748 high quality bases) assembled on 2005-12-03
> BO06701.5prime
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCAGGATAAGGTCATAAGTATCTTGGAGGAACAGGACATG
GCC
BO06701.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-PA | 921 | CG11837-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 1103 | CG11837-RA | 108..944 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29049719..29050432 | 74..787 | 3570 | 100 | Plus |
3R | 32079331 | 3R | 29050495..29050562 | 786..853 | 340 | 100 | Plus |
3R | 32079331 | 3R | 29049600..29049658 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:07:56 has no hits.
BO06701.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:04 Download gff for
BO06701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:25 Download gff for
BO06701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:42 Download gff for
BO06701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 101..944 | 10..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:17 Download gff for
BO06701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 101..944 | 10..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:17 Download gff for
BO06701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29049593..29049657 | 10..74 | 95 | -> | Plus |
3R | 29049720..29050432 | 75..787 | 100 | -> | Plus |
3R | 29050497..29050562 | 788..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:42 Download gff for
BO06701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24875315..24875379 | 10..74 | 95 | -> | Plus |
arm_3R | 24875442..24876154 | 75..787 | 100 | -> | Plus |
arm_3R | 24876219..24876284 | 788..853 | 100 | | Plus |
BO06701.complete Sequence
952 bp (952 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630498
> BO06701.complete
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCAGGATAAGGTCATAAGTATCTTGGAGGAACAGGACATG
GCCGCAAAACGTGCGAGAAGCATGGACATCGACGACTTTATGCGGCTCCT
GCTGGCTTTCAATTCAGCGGGCATTCACTTCAATGCAAGCTTTCTAGACC
AT
BO06701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 921 | CG11837-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-RA | 1103 | CG11837-RA | 108..1025 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29049719..29050432 | 74..787 | 3570 | 100 | Plus |
3R | 32079331 | 3R | 29050495..29050643 | 786..934 | 745 | 100 | Plus |
3R | 32079331 | 3R | 29049600..29049658 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:02:02 has no hits.
BO06701.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:39 Download gff for
BO06701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 1..921 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:02 Download gff for
BO06701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 83..1012 | 10..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:54 Download gff for
BO06701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 108..1025 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:39 Download gff for
BO06701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 83..1012 | 10..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:11 Download gff for
BO06701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11837-RA | 108..1025 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:11 Download gff for
BO06701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29049600..29049657 | 17..74 | 100 | -> | Plus |
3R | 29049720..29050432 | 75..787 | 100 | -> | Plus |
3R | 29050497..29050643 | 788..936 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:54 Download gff for
BO06701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24875322..24875379 | 17..74 | 100 | -> | Plus |
arm_3R | 24875442..24876154 | 75..787 | 100 | -> | Plus |
arm_3R | 24876219..24876365 | 788..936 | 98 | | Plus |
BO06701.pep Sequence
Translation from 16 to 952
> BO06701.pep
MPKVTKEKKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRAT
DVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQATPLQPKL
QVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPLFRCAVLMFQR
EFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVV
RLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL
YRSLRNEPIEDDFKMQDKVISILEEQDMAAKRARSMDIDDFMRLLLAFNS
AGIHFNASFLDH
BO06701.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11837-PA | 306 | CG11837-PA | 1..306 | 1..306 | 1557 | 100 | Plus |
mtTFB1-PA | 330 | CG42631-PA | 34..257 | 25..229 | 181 | 29.5 | Plus |