Clone BO06701 Report

Search the DGRC for BO06701

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG11837-RA
Protein status:BO06701.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO06701.3prime Sequence

925 bp (865 high quality bases) assembled on 2005-12-03

> BO06701.3prime
ATGGTCTAGAAAGCTTGCATTGAAGTGAATGCCCGCTGAATTGAAAGCCA
GCAGGAGCCGCATAAAGTCGTCGATGTCCATGCTTCTCGCACGTTTTGCG
GCCATGTCCTGTTCCTCCAAGATACTTATGACCTTATCCTGCATTTTGAA
GTCGTCTTCAATCGGCTCATTCCTGAGTGAGCGGTATAGCTTGTAGTTTT
TCTCCAACATCTCCAAAACGGACGTCACCTTAAAGGTAGCCGCCAGCGTT
TTGTTCTTGCGCAGGAAGGCAATACGGGTGAGTCCGTCCCATTCGGTGAA
GTTGACCGGTGGCGGTGGGTTTTTTGGCTCCAGCCGGACCACACTGCTTT
CTACCTTTGGTGGCGGCCTAAAGTTGTTCTTGCCCACCTTCATGAGCATG
TCCACCCGGGCCAGCAGTTGGGTGTTGATACTCAGACGACAGTAGAGCTT
ATCACCCGGTTTGGCCACCAATCGTTCTGCGAACTCGCGTTGGAACATAA
GTACGGCGCAACGGAAGAGTGGTCGGTGGAGGAGCAACTTGAAGATCAGT
GGCGAACTGATCTGATACGGAACGTTGGCGATGCACAGATCGAAGAAGGG
CAGCTCCGCCTTTAGGAAGTCTCCAATCAGCACCTGGAGCTTCGGCTGCA
GCGGAGTTGCCTGCACACGCTTCTGCAACTCGGCGGCCAATCGTGTGTCA
ATCTCACAGGCGATCACTTTCTTGGCGCGCTCCAGCATCCGAACGGTCAT
GTTTCCGGTTCCAGGACCGATTTCCAGCACCACATCGGTAGCTCTCAAAG
CGGCTTTCTCCAGCATGGTGGTTATCACCAGAGGATTCTTCAGGATGTGC
TGACCAAAGTCCTTGTTGAAAACGATCCCCTGTTTTTGCACATCATTATG
AATCCGGCTCTTCTTTTCCTTCGTA

BO06701.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-PA 921 CG11837-RA 12..918 925..19 4535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 1103 CG11837-RA 119..1025 925..19 4535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29049719..29050432 879..166 3570 100 Minus
3R 32079331 3R 29050495..29050643 167..19 745 100 Minus
3R 32079331 3R 29049611..29049658 925..878 240 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:07:46 has no hits.

BO06701.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:03 Download gff for BO06701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 13..921 18..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:24 Download gff for BO06701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 13..921 18..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:40 Download gff for BO06701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 120..1030 11..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:16 Download gff for BO06701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 120..1030 11..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:16 Download gff for BO06701.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29049612..29049657 879..924 100 -> Minus
3R 29049720..29050432 166..878 100 -> Minus
3R 29050497..29050648 11..165 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:40 Download gff for BO06701.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24875334..24875379 879..924 100 -> Minus
arm_3R 24875442..24876154 166..878 100 -> Minus
arm_3R 24876219..24876370 11..165 97   Minus

BO06701.5prime Sequence

853 bp (748 high quality bases) assembled on 2005-12-03

> BO06701.5prime
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCAGGATAAGGTCATAAGTATCTTGGAGGAACAGGACATG
GCC

BO06701.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-PA 921 CG11837-RA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 1103 CG11837-RA 108..944 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29049719..29050432 74..787 3570 100 Plus
3R 32079331 3R 29050495..29050562 786..853 340 100 Plus
3R 32079331 3R 29049600..29049658 17..75 295 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:07:56 has no hits.

BO06701.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:04 Download gff for BO06701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:25 Download gff for BO06701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:42 Download gff for BO06701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 101..944 10..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:17 Download gff for BO06701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 101..944 10..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:17 Download gff for BO06701.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29049593..29049657 10..74 95 -> Plus
3R 29049720..29050432 75..787 100 -> Plus
3R 29050497..29050562 788..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:42 Download gff for BO06701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24875315..24875379 10..74 95 -> Plus
arm_3R 24875442..24876154 75..787 100 -> Plus
arm_3R 24876219..24876284 788..853 100   Plus

BO06701.complete Sequence

952 bp (952 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630498

> BO06701.complete
GAAGTTATCAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGA
TTCATAATGATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGT
CAGCACATCCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGC
CGCTTTGAGAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAA
ACATGACCGTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAG
ATTGACACACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCC
GCTGCAGCCGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGC
TGCCCTTCTTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCG
CCACTGATCTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGT
ACTTATGTTCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTG
ATAAGCTCTACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTG
GACATGCTCATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGT
AGAAAGCAGTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCA
ACTTCACCGAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAAC
AAAACGCTGGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGA
GAAAAACTACAAGCTATACCGCTCACTCAGGAATGAGCCGATTGAAGACG
ACTTCAAAATGCAGGATAAGGTCATAAGTATCTTGGAGGAACAGGACATG
GCCGCAAAACGTGCGAGAAGCATGGACATCGACGACTTTATGCGGCTCCT
GCTGGCTTTCAATTCAGCGGGCATTCACTTCAATGCAAGCTTTCTAGACC
AT

BO06701.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 921 CG11837-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 1103 CG11837-RA 108..1025 17..934 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29049719..29050432 74..787 3570 100 Plus
3R 32079331 3R 29050495..29050643 786..934 745 100 Plus
3R 32079331 3R 29049600..29049658 17..75 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:02:02 has no hits.

BO06701.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:39 Download gff for BO06701.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 1..921 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:02 Download gff for BO06701.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 83..1012 10..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:54 Download gff for BO06701.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 108..1025 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:39 Download gff for BO06701.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 83..1012 10..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:11 Download gff for BO06701.complete
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 108..1025 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:11 Download gff for BO06701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29049600..29049657 17..74 100 -> Plus
3R 29049720..29050432 75..787 100 -> Plus
3R 29050497..29050643 788..936 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:54 Download gff for BO06701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24875322..24875379 17..74 100 -> Plus
arm_3R 24875442..24876154 75..787 100 -> Plus
arm_3R 24876219..24876365 788..936 98   Plus

BO06701.pep Sequence

Translation from 16 to 952

> BO06701.pep
MPKVTKEKKSRIHNDVQKQGIVFNKDFGQHILKNPLVITTMLEKAALRAT
DVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQATPLQPKL
QVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPLFRCAVLMFQR
EFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVV
RLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSVLEMLEKNYKL
YRSLRNEPIEDDFKMQDKVISILEEQDMAAKRARSMDIDDFMRLLLAFNS
AGIHFNASFLDH

BO06701.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-PA 306 CG11837-PA 1..306 1..306 1557 100 Plus
mtTFB1-PA 330 CG42631-PA 34..257 25..229 181 29.5 Plus