Clone BO06702 Report

Search the DGRC for BO06702

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptborr-RA
Protein status:BO06702.pep: validated full length
Sequenced Size:979

Clone Sequence Records

BO06702.3prime Sequence

933 bp (826 high quality bases) assembled on 2005-12-03

> BO06702.3prime
ATGGTCTAGAAAGCTTGCCTTGAACACCGCCTGGCTGGCCTTATTAACAA
TCATCTGCAAGTTCTCGTGCAGCGTTTTGATCTGGTTAAGGGTGTCCTCG
TCCAGGTTCTCCAACAGATTTGACTCCACCTCGTCGGCATCCAGTTTTTT
GGGCCGCAAGCTAAGAACTCCGTTCCGAATGGGTATGTTCACATTGGCGA
ACTTGTCTGGCATTACTTGAGCCACCATGGGACTGCCGTATTTGGATAGT
GCCACCTCGCCGGGCTTGGGATAGCGCAGGAATGCCATCGGCGGTGTAGT
TGGCGATCCGGAGCGCATTTGCTTCTGTTTCAAAGGAGTGCGGTCGGCAC
TGAAGGCCTTCGCACGCGAGGCCATCGGTGTGCGCAGTTTGCTGCGCGAA
TTGCGGCTGCTGCTGCTGCTGCTCGAAATTGACGGCGGTTTGGCCGAGTG
CAATATGTTGAGATCCCCGCAGGCGGAACGACTGCGCCGCGCTCGACGAG
CCCTCGCCGAGTGCAGTGGTCCGGGTGTGCGCATGGCCTTCGTGGACCGC
AGCAGGGAGCCTGTGTGGGCGGCCAGGATGCTCCCACCGCTGGCACCGAT
GCTGCTGTCCTCTTCGTCATTGCGACTTCCAGTGGCGGAGGGGGCGTGGC
CCTCGATGGCGCTGCCACTCATGGACATCGAGGCGAGCAGCTGCGTCTGA
TCGCTGGCCTTGAAGTCGCTGAAGCGGTCCAGTTCCTCGAAGAGGCGCAG
CACTTCGGGCATCTTCAGATTGGCCAGCTCCTTCTGCACCTGGCCGAGCA
GTGTCTTCACCTGGTGGTCCACGGCGGAGAGGAACTTGGTCTCCAGCGAA
TCGATGCTGATAAGGCGGGGATCCATTTTCAGCTCGTACAGGCGCACCTT
CTCTTCGCGATTGGCACCTCGCGGTTGCGTTTG

BO06702.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PA 948 Borr-RA 49..945 915..19 4460 99.8 Minus
CG4454-PB 960 Borr-RB 363..957 613..19 2975 100 Minus
CG4454-PB 960 Borr-RB 49..352 915..612 1495 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 1286 CG4454-RA 162..1077 933..19 4540 99.8 Minus
borr-RB 1298 CG4454-RB 162..1089 933..19 4410 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252340 215..613 1995 100 Plus
2L 23513712 2L 9252635..9252957 612..933 1550 99.4 Plus
2L 23513712 2L 9251681..9251876 19..214 980 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:20:07 has no hits.

BO06702.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:05 Download gff for BO06702.3prime
Subject Subject Range Query Range Percent Splice Strand
Borr-PA 30..948 18..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:27 Download gff for BO06702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PA 30..948 18..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:27 Download gff for BO06702.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 162..1085 9..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:16 Download gff for BO06702.3prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 162..1085 9..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:16 Download gff for BO06702.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9251673..9251876 9..214 98 <- Plus
2L 9251942..9252338 215..611 100 <- Plus
2L 9252635..9252957 612..933 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:27 Download gff for BO06702.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251673..9251876 9..214 98 <- Plus
arm_2L 9251942..9252338 215..611 100 <- Plus
arm_2L 9252635..9252957 612..933 99   Plus

BO06702.5prime Sequence

979 bp (822 high quality bases) assembled on 2005-12-03

> BO06702.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAACTGGATGCCGACGAGG
TGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTAACCAGATC
AAAACGCTGCACGAGAACTTGCAGATGATTGTTAATAAGGCCAGCCAAGG
CGGTGTTCAGGGCAGCTTTCTAGACCATT

BO06702.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4454-PA 948 Borr-RA 1..818 17..834 4090 100 Plus
CG4454-PB 960 Borr-RB 363..830 367..834 2340 100 Plus
CG4454-PB 960 Borr-RB 1..352 17..368 1760 100 Plus
CG4454-PB 960 Borr-RB 827..944 830..947 590 100 Plus
CG4454-PA 948 Borr-RA 815..932 830..947 590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 1286 CG4454-RA 133..1075 17..959 4670 99.8 Plus
borr-RB 1298 CG4454-RB 133..1087 17..959 4540 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252340 765..367 1995 100 Minus
2L 23513712 2L 9252635..9252986 368..17 1760 100 Minus
2L 23513712 2L 9251683..9251876 959..766 875 99 Minus
Blast to na_te.dros performed on 2015-02-12 09:47:46 has no hits.

BO06702.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:06 Download gff for BO06702.5prime
Subject Subject Range Query Range Percent Splice Strand
Borr-PA 1..948 17..965 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:28 Download gff for BO06702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-PA 1..948 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:49 Download gff for BO06702.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1085 17..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:15 Download gff for BO06702.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1085 17..970 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:15 Download gff for BO06702.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9251673..9251876 766..970 97 <- Minus
2L 9251942..9252338 369..765 100 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:49 Download gff for BO06702.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251673..9251876 766..970 97 <- Minus
arm_2L 9251942..9252338 369..765 100 <- Minus
arm_2L 9252635..9252986 17..368 100   Minus

BO06702.complete Sequence

979 bp (979 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630499

> BO06702.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTGGATGCCGACGAG
GTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTAACCAGAT
CAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATAAGGCCAGCCAGG
CGGTGTTCAAGGCAAGCTTTCTAGACCAT

BO06702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 948 CG4454-PA 1..945 17..961 4725 100 Plus
borr-RB 960 CG4454-PB 1..957 17..961 4570 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 1286 CG4454-RA 133..1077 17..961 4725 100 Plus
borr-RB 1298 CG4454-RB 133..1089 17..961 4570 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9251942..9252340 765..367 1995 100 Minus
2L 23513712 2L 9252635..9252986 368..17 1760 100 Minus
2L 23513712 2L 9251681..9251876 961..766 980 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:09:21 has no hits.

BO06702.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:41 Download gff for BO06702.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RA 1..948 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:03 Download gff for BO06702.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RA 131..1083 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:33 Download gff for BO06702.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1077 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:41 Download gff for BO06702.complete
Subject Subject Range Query Range Percent Splice Strand
Borr-RA 131..1083 17..971 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:39 Download gff for BO06702.complete
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..1077 17..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:39 Download gff for BO06702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9251677..9251876 766..963 99 <- Minus
2L 9251942..9252338 369..765 100 <- Minus
2L 9252635..9252986 17..368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:33 Download gff for BO06702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9251942..9252338 369..765 100 <- Minus
arm_2L 9251677..9251876 766..963 99 <- Minus
arm_2L 9252635..9252986 17..368 100   Minus

BO06702.pep Sequence

Translation from 16 to 979

> BO06702.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEEDSSIGASGGSILAAHTGSLLRSTKAMRTPGPL
HSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTPMASR
AKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPMVAQV
MPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIKTLHE
NLQMIVNKASQAVFKASFLDH

BO06702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
borr-PA 315 CG4454-PA 1..315 1..315 1564 100 Plus
borr-PB 319 CG4454-PB 1..319 1..315 1549 98.7 Plus
aust-PB 216 CG17009-PB 88..210 175..311 236 41.4 Plus
aust-PA 216 CG17009-PA 88..210 175..311 236 41.4 Plus
aust-PB 216 CG17009-PB 1..98 1..99 178 41 Plus
aust-PA 216 CG17009-PA 1..98 1..99 178 41 Plus