Clone Sequence Records
BO06702.3prime Sequence
933 bp (826 high quality bases) assembled on 2005-12-03
> BO06702.3prime
ATGGTCTAGAAAGCTTGCCTTGAACACCGCCTGGCTGGCCTTATTAACAA
TCATCTGCAAGTTCTCGTGCAGCGTTTTGATCTGGTTAAGGGTGTCCTCG
TCCAGGTTCTCCAACAGATTTGACTCCACCTCGTCGGCATCCAGTTTTTT
GGGCCGCAAGCTAAGAACTCCGTTCCGAATGGGTATGTTCACATTGGCGA
ACTTGTCTGGCATTACTTGAGCCACCATGGGACTGCCGTATTTGGATAGT
GCCACCTCGCCGGGCTTGGGATAGCGCAGGAATGCCATCGGCGGTGTAGT
TGGCGATCCGGAGCGCATTTGCTTCTGTTTCAAAGGAGTGCGGTCGGCAC
TGAAGGCCTTCGCACGCGAGGCCATCGGTGTGCGCAGTTTGCTGCGCGAA
TTGCGGCTGCTGCTGCTGCTGCTCGAAATTGACGGCGGTTTGGCCGAGTG
CAATATGTTGAGATCCCCGCAGGCGGAACGACTGCGCCGCGCTCGACGAG
CCCTCGCCGAGTGCAGTGGTCCGGGTGTGCGCATGGCCTTCGTGGACCGC
AGCAGGGAGCCTGTGTGGGCGGCCAGGATGCTCCCACCGCTGGCACCGAT
GCTGCTGTCCTCTTCGTCATTGCGACTTCCAGTGGCGGAGGGGGCGTGGC
CCTCGATGGCGCTGCCACTCATGGACATCGAGGCGAGCAGCTGCGTCTGA
TCGCTGGCCTTGAAGTCGCTGAAGCGGTCCAGTTCCTCGAAGAGGCGCAG
CACTTCGGGCATCTTCAGATTGGCCAGCTCCTTCTGCACCTGGCCGAGCA
GTGTCTTCACCTGGTGGTCCACGGCGGAGAGGAACTTGGTCTCCAGCGAA
TCGATGCTGATAAGGCGGGGATCCATTTTCAGCTCGTACAGGCGCACCTT
CTCTTCGCGATTGGCACCTCGCGGTTGCGTTTG
BO06702.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PA | 948 | Borr-RA | 49..945 | 915..19 | 4460 | 99.8 | Minus |
CG4454-PB | 960 | Borr-RB | 363..957 | 613..19 | 2975 | 100 | Minus |
CG4454-PB | 960 | Borr-RB | 49..352 | 915..612 | 1495 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 1286 | CG4454-RA | 162..1077 | 933..19 | 4540 | 99.8 | Minus |
borr-RB | 1298 | CG4454-RB | 162..1089 | 933..19 | 4410 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252340 | 215..613 | 1995 | 100 | Plus |
2L | 23513712 | 2L | 9252635..9252957 | 612..933 | 1550 | 99.4 | Plus |
2L | 23513712 | 2L | 9251681..9251876 | 19..214 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:20:07 has no hits.
BO06702.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:05 Download gff for
BO06702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-PA | 30..948 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:27 Download gff for
BO06702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PA | 30..948 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:27 Download gff for
BO06702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 162..1085 | 9..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:16 Download gff for
BO06702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 162..1085 | 9..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:16 Download gff for
BO06702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251673..9251876 | 9..214 | 98 | <- | Plus |
2L | 9251942..9252338 | 215..611 | 100 | <- | Plus |
2L | 9252635..9252957 | 612..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:27 Download gff for
BO06702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251673..9251876 | 9..214 | 98 | <- | Plus |
arm_2L | 9251942..9252338 | 215..611 | 100 | <- | Plus |
arm_2L | 9252635..9252957 | 612..933 | 99 | | Plus |
BO06702.5prime Sequence
979 bp (822 high quality bases) assembled on 2005-12-03
> BO06702.5prime
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAACTGGATGCCGACGAGG
TGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTAACCAGATC
AAAACGCTGCACGAGAACTTGCAGATGATTGTTAATAAGGCCAGCCAAGG
CGGTGTTCAGGGCAGCTTTCTAGACCATT
BO06702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4454-PA | 948 | Borr-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG4454-PB | 960 | Borr-RB | 363..830 | 367..834 | 2340 | 100 | Plus |
CG4454-PB | 960 | Borr-RB | 1..352 | 17..368 | 1760 | 100 | Plus |
CG4454-PB | 960 | Borr-RB | 827..944 | 830..947 | 590 | 100 | Plus |
CG4454-PA | 948 | Borr-RA | 815..932 | 830..947 | 590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 1286 | CG4454-RA | 133..1075 | 17..959 | 4670 | 99.8 | Plus |
borr-RB | 1298 | CG4454-RB | 133..1087 | 17..959 | 4540 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252340 | 765..367 | 1995 | 100 | Minus |
2L | 23513712 | 2L | 9252635..9252986 | 368..17 | 1760 | 100 | Minus |
2L | 23513712 | 2L | 9251683..9251876 | 959..766 | 875 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:47:46 has no hits.
BO06702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:06 Download gff for
BO06702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:28 Download gff for
BO06702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4454-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:49 Download gff for
BO06702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1085 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:15 Download gff for
BO06702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1085 | 17..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:15 Download gff for
BO06702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251673..9251876 | 766..970 | 97 | <- | Minus |
2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:49 Download gff for
BO06702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251673..9251876 | 766..970 | 97 | <- | Minus |
arm_2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
BO06702.complete Sequence
979 bp (979 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630499
> BO06702.complete
GAAGTTATCAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAAC
GCAACCGCGAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTG
AAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCT
CTCCGCCGTGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGG
AGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTG
GACCGCTTCAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTC
GATGTCCATGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTG
GAAGTCGCAATGACGAAGAGGACAGCAGCATCGGTGCCAGCGGTGGGAGC
ATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCATGCG
CACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGCAGTC
GTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCCGTCA
ATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGCGCAC
ACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCTTTGA
AACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGCATTC
CTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCAGTCC
CATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATACCCA
TTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTGGATGCCGACGAG
GTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCCTTAACCAGAT
CAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATAAGGCCAGCCAGG
CGGTGTTCAAGGCAAGCTTTCTAGACCAT
BO06702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 948 | CG4454-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
borr-RB | 960 | CG4454-PB | 1..957 | 17..961 | 4570 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-RA | 1286 | CG4454-RA | 133..1077 | 17..961 | 4725 | 100 | Plus |
borr-RB | 1298 | CG4454-RB | 133..1089 | 17..961 | 4570 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9251942..9252340 | 765..367 | 1995 | 100 | Minus |
2L | 23513712 | 2L | 9252635..9252986 | 368..17 | 1760 | 100 | Minus |
2L | 23513712 | 2L | 9251681..9251876 | 961..766 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:09:21 has no hits.
BO06702.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:41 Download gff for
BO06702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RA | 1..948 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:03 Download gff for
BO06702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 131..1083 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:33 Download gff for
BO06702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1077 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:41 Download gff for
BO06702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Borr-RA | 131..1083 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:39 Download gff for
BO06702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
borr-RA | 133..1077 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:39 Download gff for
BO06702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9251677..9251876 | 766..963 | 99 | <- | Minus |
2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
2L | 9252635..9252986 | 17..368 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:33 Download gff for
BO06702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9251942..9252338 | 369..765 | 100 | <- | Minus |
arm_2L | 9251677..9251876 | 766..963 | 99 | <- | Minus |
arm_2L | 9252635..9252986 | 17..368 | 100 | | Minus |
BO06702.pep Sequence
Translation from 16 to 979
> BO06702.pep
MPRTKIPKNSKRNREVANREEKVRLYELKMDSRLISIDSLETKFLSAVDH
QVKTLLGQVQKELANLKMPEVLRLFEELDRFSDFKASDQTQLLASMSMSG
SAIEGHAPSATGSRNDEEDSSIGASGGSILAAHTGSLLRSTKAMRTPGPL
HSARARRARRSRSACGDLNILHSAKPPSISSSSSSSRNSRSKLRTPMASR
AKAFSADRTPLKQKQMRSGSPTTPPMAFLRYPKPGEVALSKYGSPMVAQV
MPDKFANVNIPIRNGVLSLRPKKLDADEVESNLLENLDEDTLNQIKTLHE
NLQMIVNKASQAVFKASFLDH
BO06702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
borr-PA | 315 | CG4454-PA | 1..315 | 1..315 | 1564 | 100 | Plus |
borr-PB | 319 | CG4454-PB | 1..319 | 1..315 | 1549 | 98.7 | Plus |
aust-PB | 216 | CG17009-PB | 88..210 | 175..311 | 236 | 41.4 | Plus |
aust-PA | 216 | CG17009-PA | 88..210 | 175..311 | 236 | 41.4 | Plus |
aust-PB | 216 | CG17009-PB | 1..98 | 1..99 | 178 | 41 | Plus |
aust-PA | 216 | CG17009-PA | 1..98 | 1..99 | 178 | 41 | Plus |