Clone Sequence Records
BO06709.3prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-03
> BO06709.3prime
ATGGTCTAGAAAGCTTGCCTTGTGCGCAATGGGAATCAGTGTCTCGCCGG
CGGTGAGTGCTGGCAGGGGGGCGTCCACGGTCAGGACTCCGTCCTTGCTG
AGGGACGAGCGGATGGACTCGGGATTGACGCCCTTGGGCAGCAGGAACTC
CCGATTGTACTCCCTGTACACGCTCTTTGTGTCCGACTTCTCCTCGTGCT
TGGCGTGCACCAATAGCTTCTGGTCGACGGTTTTCACAACAATTTCCTCG
GGCGCATACTGGCTGACATCGAAACGCAGCTTCAGCACTTTGTTATCGCC
CTCATCCTGGATCAAGGGTGAGCTAATGTCGGAGACGTAGTTCTGTTGCT
TTGGGATTCGGGATGGCAGCGCCGAGTTTGTCGTTGAGCTGGTGGACTCG
AAGAAGTTCGCCTCGCGGTTCATCAGCTCGTGACGGAACTTGGCCATCTC
CTCCTCCATTTTGCGCATCTCGGAGTCGAAGCGCTCGCGGATGTTGCTGA
ACTCCGTGTCGATGACGCTGAAGTCGCCCAGCTTGATGGGGATATTCCTC
TTGTTAGCCTCGGCCATGTCGACTGATAACT
BO06709.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-PA | 552 | CG14207-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
CG14207-PB | 579 | CG14207-RB | 202..576 | 393..19 | 1875 | 100 | Minus |
CG14207-PB | 579 | CG14207-RB | 1..182 | 567..386 | 910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 1380 | CG14207-RD | 306..854 | 567..19 | 2745 | 100 | Minus |
CG14207-RA | 1240 | CG14207-RA | 306..854 | 567..19 | 2745 | 100 | Minus |
CG14207-RC | 753 | CG14207-RC | 110..487 | 396..19 | 1890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19610695..19610887 | 211..19 | 965 | 100 | Minus |
X | 23542271 | X | 19605504..19605682 | 567..389 | 895 | 100 | Minus |
X | 23542271 | X | 19610525..19610625 | 309..209 | 505 | 100 | Minus |
X | 23542271 | X | 19610378..19610463 | 391..306 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:16:03 has no hits.
BO06709.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:17 Download gff for
BO06709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 16..567 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:44 Download gff for
BO06709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 16..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:07 Download gff for
BO06709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..859 | 14..575 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:10 Download gff for
BO06709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..859 | 14..575 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:10 Download gff for
BO06709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19605497..19605682 | 389..573 | 97 | -> | Minus |
X | 19610381..19610462 | 307..388 | 100 | -> | Minus |
X | 19610528..19610623 | 211..306 | 100 | -> | Minus |
X | 19610696..19610892 | 14..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:07 Download gff for
BO06709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19499530..19499715 | 389..573 | 97 | -> | Minus |
arm_X | 19504414..19504495 | 307..388 | 100 | -> | Minus |
arm_X | 19504561..19504656 | 211..306 | 100 | -> | Minus |
arm_X | 19504729..19504925 | 14..210 | 98 | | Minus |
BO06709.5prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-03
> BO06709.5prime
GAAGTTATCAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCA
AGCTGGGCGACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAG
CGCTTCGACTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCG
TCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCAA
CGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGAACTACGTC
TCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAACAAAGTGCT
GAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAATTGTTGTGA
AAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGGAGAAGTCG
GACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTGCTGCCCAA
GGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGACGGAGTCC
TGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGACACTGATT
CCCATTGCGCACAAGGCAAGCTTTCTAGACC
BO06709.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-PA | 552 | CG14207-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG14207-PB | 579 | CG14207-RB | 202..576 | 191..565 | 1875 | 100 | Plus |
CG14207-PB | 579 | CG14207-RB | 1..182 | 17..198 | 910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 1380 | CG14207-RD | 306..854 | 17..565 | 2745 | 100 | Plus |
CG14207-RA | 1240 | CG14207-RA | 306..854 | 17..565 | 2745 | 100 | Plus |
CG14207-RC | 753 | CG14207-RC | 110..487 | 188..565 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19610695..19610887 | 373..565 | 965 | 100 | Plus |
X | 23542271 | X | 19605504..19605682 | 17..195 | 895 | 100 | Plus |
X | 23542271 | X | 19610525..19610625 | 275..375 | 505 | 100 | Plus |
X | 23542271 | X | 19610378..19610463 | 193..278 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:06:37 has no hits.
BO06709.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:18 Download gff for
BO06709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:46 Download gff for
BO06709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:46 Download gff for
BO06709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..859 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:53:55 Download gff for
BO06709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..859 | 9..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:53:55 Download gff for
BO06709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19605497..19605682 | 11..195 | 97 | -> | Plus |
X | 19610381..19610462 | 196..277 | 100 | -> | Plus |
X | 19610528..19610623 | 278..373 | 100 | -> | Plus |
X | 19610696..19610892 | 374..570 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:46 Download gff for
BO06709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19499530..19499715 | 11..195 | 97 | -> | Plus |
arm_X | 19504414..19504495 | 196..277 | 100 | -> | Plus |
arm_X | 19504561..19504656 | 278..373 | 100 | -> | Plus |
arm_X | 19504729..19504925 | 374..570 | 98 | | Plus |
BO06709.complete Sequence
583 bp (583 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630500
> BO06709.complete
GAAGTTATCAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCA
AGCTGGGCGACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAG
CGCTTCGACTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCG
TCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCAA
CGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGAACTACGTC
TCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAACAAAGTGCT
GAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAATTGTTGTGA
AAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGGAGAAGTCG
GACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTGCTGCCCAA
GGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGACGGAGTCC
TGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGACACTGATT
CCCATTGCGCACAAGGCAAGCTTTCTAGACCAT
BO06709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 552 | CG14207-PD | 1..549 | 17..565 | 2745 | 100 | Plus |
CG14207-RA | 552 | CG14207-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG14207-RC | 465 | CG14207-PC | 85..462 | 188..565 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 1380 | CG14207-RD | 306..854 | 17..565 | 2745 | 100 | Plus |
CG14207-RA | 1240 | CG14207-RA | 306..854 | 17..565 | 2745 | 100 | Plus |
CG14207-RC | 753 | CG14207-RC | 110..487 | 188..565 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19610695..19610887 | 373..565 | 965 | 100 | Plus |
X | 23542271 | X | 19605504..19605682 | 17..195 | 895 | 100 | Plus |
X | 23542271 | X | 19610525..19610625 | 275..375 | 505 | 100 | Plus |
X | 23542271 | X | 19610378..19610463 | 193..278 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:46 has no hits.
BO06709.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:25 Download gff for
BO06709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:00 Download gff for
BO06709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 337..900 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:31 Download gff for
BO06709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 306..854 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:25 Download gff for
BO06709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 337..900 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:47 Download gff for
BO06709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 306..854 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:47 Download gff for
BO06709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19605504..19605682 | 17..195 | 100 | -> | Plus |
X | 19610381..19610462 | 196..277 | 100 | -> | Plus |
X | 19610528..19610623 | 278..373 | 100 | -> | Plus |
X | 19610696..19610887 | 374..567 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:31 Download gff for
BO06709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19499537..19499715 | 17..195 | 100 | -> | Plus |
arm_X | 19504414..19504495 | 196..277 | 100 | -> | Plus |
arm_X | 19504561..19504656 | 278..373 | 100 | -> | Plus |
arm_X | 19504729..19504920 | 374..567 | 98 | | Plus |
BO06709.pep Sequence
Translation from 16 to 583
> BO06709.pep
MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMN
REANFFESTSSTTNSALPSRIPKQQNYVSDISSPLIQDEGDNKVLKLRFD
VSQYAPEEIVVKTVDQKLLVHAKHEEKSDTKSVYREYNREFLLPKGVNPE
SIRSSLSKDGVLTVDAPLPALTAGETLIPIAHKASFLDH
BO06709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-PD | 183 | CG14207-PD | 1..183 | 1..183 | 922 | 100 | Plus |
CG14207-PA | 183 | CG14207-PA | 1..183 | 1..183 | 922 | 100 | Plus |
CG14207-PB | 192 | CG14207-PB | 1..192 | 1..183 | 902 | 95.3 | Plus |
CG14207-PC | 154 | CG14207-PC | 29..154 | 58..183 | 631 | 100 | Plus |
l(2)efl-PC | 187 | CG4533-PC | 75..161 | 91..176 | 194 | 43.7 | Plus |