Clone BO06711 Report

Search the DGRC for BO06711

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG5941-RA
Protein status:BO06711.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO06711.3prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-03

> BO06711.3prime
ATGGTCTAGAAAGCTTGCCTTCACGGGCTTCGACTTCCACAGGCCGTCGT
TGAGGAAGTGGTACGTCTCGATACCGATGCCTTTGTTCTTCGCCAGAATT
TCCTGTGTGGATAACGTGAGGAGTCCAACGGCCAGGGCGTGCTCCTTGCC
CTCAGCCATGATGGCCACCACGGTGTCCTTGTCGGCCGGCGTCATACAGG
CGCCTGGCGATGTGAGGCCGGGACACATGACGTTCGCTCCGCTCAGGACG
AAGCGGATGGCGCCTTTGTCCACTTGCTGCATGGTCACGAAGTAGGGGAA
CTTGTGCAGGAGGCGCAGGGTAGGCATCCAGGGGCCATCGCGGTGGCGAA
AGAACACCTGGTCGCCGGCTCCGTTTAGCAGCAGTTCGATGTGGTCATGG
CACTTGGCGATGCGGTACGAGTCCTTCTTGGGCAGGATCAGGTCGATGTG
ACTCTCCAACTTGGGATAGGCCTCCAGCAACTTGGCACGTATGCCCTTCT
GCACAGACGACTTCAGCTGCTGAATGCTGGAAATGCTGTCCTTCTCTTCG
AATTTTTTGAACATGTCGACTGATAACT

BO06711.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-PA 549 CG5941-RA 1..546 564..19 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 798 CG5941-RB 78..623 564..19 2730 100 Minus
CG5941-RA 1245 CG5941-RA 78..623 564..19 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6038262..6038565 401..98 1520 100 Minus
X 23542271 X 6038041..6038193 553..401 765 100 Minus
X 23542271 X 6038876..6038954 97..19 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:44:45 has no hits.

BO06711.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:21 Download gff for BO06711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:50 Download gff for BO06711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:21 Download gff for BO06711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 84..644 13..574 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:11 Download gff for BO06711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 68..628 13..574 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:11 Download gff for BO06711.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6038041..6038193 401..553 100 -> Minus
X 6038263..6038565 98..400 100 -> Minus
X 6038876..6038959 13..97 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:21 Download gff for BO06711.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5932074..5932226 401..553 100 -> Minus
arm_X 5932296..5932598 98..400 100 -> Minus
arm_X 5932909..5932992 13..97 96   Minus

BO06711.5prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-03

> BO06711.5prime
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGGCAAGCTTTCTAGACC

BO06711.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-PA 549 CG5941-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 798 CG5941-RB 78..623 17..562 2730 100 Plus
CG5941-RA 1245 CG5941-RA 78..623 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6038262..6038565 180..483 1520 100 Plus
X 23542271 X 6038041..6038193 28..180 765 100 Plus
X 23542271 X 6038876..6038954 484..562 395 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:06:41 has no hits.

BO06711.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:22 Download gff for BO06711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:51 Download gff for BO06711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:47 Download gff for BO06711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 84..644 7..568 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:04 Download gff for BO06711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 68..628 7..568 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:04 Download gff for BO06711.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6038041..6038193 28..180 100 -> Plus
X 6038263..6038565 181..483 100 -> Plus
X 6038876..6038959 484..568 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:47 Download gff for BO06711.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5932074..5932226 28..180 100 -> Plus
arm_X 5932296..5932598 181..483 100 -> Plus
arm_X 5932909..5932992 484..568 96   Plus

BO06711.complete Sequence

580 bp (580 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630501

> BO06711.complete
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGGCAAGCTTTCTAGACCAT

BO06711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 549 CG5941-PB 1..546 17..562 2730 100 Plus
CG5941-RA 549 CG5941-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-RB 798 CG5941-RB 78..623 17..562 2730 100 Plus
CG5941-RA 1245 CG5941-RA 78..623 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6038262..6038565 180..483 1520 100 Plus
X 23542271 X 6038041..6038193 28..180 765 100 Plus
X 23542271 X 6038876..6038954 484..562 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:42:55 has no hits.

BO06711.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:18 Download gff for BO06711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:27 Download gff for BO06711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 75..635 7..568 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:08 Download gff for BO06711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 99..639 22..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:18 Download gff for BO06711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 75..635 7..568 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:45 Download gff for BO06711.complete
Subject Subject Range Query Range Percent Splice Strand
CG5941-RA 83..623 22..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:45 Download gff for BO06711.complete
Subject Subject Range Query Range Percent Splice Strand
X 6038038..6038193 22..180 97 -> Plus
X 6038263..6038565 181..483 100 -> Plus
X 6038876..6038954 484..564 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:08 Download gff for BO06711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5932071..5932226 22..180 97 -> Plus
arm_X 5932296..5932598 181..483 100 -> Plus
arm_X 5932909..5932987 484..564 97   Plus

BO06711.pep Sequence

Translation from 16 to 580

> BO06711.pep
MFKKFEEKDSISSIQQLKSSVQKGIRAKLLEAYPKLESHIDLILPKKDSY
RIAKCHDHIELLLNGAGDQVFFRHRDGPWMPTLRLLHKFPYFVTMQQVDK
GAIRFVLSGANVMCPGLTSPGACMTPADKDTVVAIMAEGKEHALAVGLLT
LSTQEILAKNKGIGIETYHFLNDGLWKSKPVKASFLDH

BO06711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5941-PB 182 CG5941-PB 1..182 1..182 949 100 Plus
CG5941-PA 182 CG5941-PA 1..182 1..182 949 100 Plus