Clone Sequence Records
BO06711.3prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-03
> BO06711.3prime
ATGGTCTAGAAAGCTTGCCTTCACGGGCTTCGACTTCCACAGGCCGTCGT
TGAGGAAGTGGTACGTCTCGATACCGATGCCTTTGTTCTTCGCCAGAATT
TCCTGTGTGGATAACGTGAGGAGTCCAACGGCCAGGGCGTGCTCCTTGCC
CTCAGCCATGATGGCCACCACGGTGTCCTTGTCGGCCGGCGTCATACAGG
CGCCTGGCGATGTGAGGCCGGGACACATGACGTTCGCTCCGCTCAGGACG
AAGCGGATGGCGCCTTTGTCCACTTGCTGCATGGTCACGAAGTAGGGGAA
CTTGTGCAGGAGGCGCAGGGTAGGCATCCAGGGGCCATCGCGGTGGCGAA
AGAACACCTGGTCGCCGGCTCCGTTTAGCAGCAGTTCGATGTGGTCATGG
CACTTGGCGATGCGGTACGAGTCCTTCTTGGGCAGGATCAGGTCGATGTG
ACTCTCCAACTTGGGATAGGCCTCCAGCAACTTGGCACGTATGCCCTTCT
GCACAGACGACTTCAGCTGCTGAATGCTGGAAATGCTGTCCTTCTCTTCG
AATTTTTTGAACATGTCGACTGATAACT
BO06711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-PA | 549 | CG5941-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 798 | CG5941-RB | 78..623 | 564..19 | 2730 | 100 | Minus |
CG5941-RA | 1245 | CG5941-RA | 78..623 | 564..19 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6038262..6038565 | 401..98 | 1520 | 100 | Minus |
X | 23542271 | X | 6038041..6038193 | 553..401 | 765 | 100 | Minus |
X | 23542271 | X | 6038876..6038954 | 97..19 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:44:45 has no hits.
BO06711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:21 Download gff for
BO06711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:50 Download gff for
BO06711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:21 Download gff for
BO06711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 84..644 | 13..574 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:11 Download gff for
BO06711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 68..628 | 13..574 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:11 Download gff for
BO06711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6038041..6038193 | 401..553 | 100 | -> | Minus |
X | 6038263..6038565 | 98..400 | 100 | -> | Minus |
X | 6038876..6038959 | 13..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:21 Download gff for
BO06711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5932074..5932226 | 401..553 | 100 | -> | Minus |
arm_X | 5932296..5932598 | 98..400 | 100 | -> | Minus |
arm_X | 5932909..5932992 | 13..97 | 96 | | Minus |
BO06711.5prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-03
> BO06711.5prime
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGGCAAGCTTTCTAGACC
BO06711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-PA | 549 | CG5941-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 798 | CG5941-RB | 78..623 | 17..562 | 2730 | 100 | Plus |
CG5941-RA | 1245 | CG5941-RA | 78..623 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6038262..6038565 | 180..483 | 1520 | 100 | Plus |
X | 23542271 | X | 6038041..6038193 | 28..180 | 765 | 100 | Plus |
X | 23542271 | X | 6038876..6038954 | 484..562 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:06:41 has no hits.
BO06711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:22 Download gff for
BO06711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:32:51 Download gff for
BO06711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:47 Download gff for
BO06711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 84..644 | 7..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:04 Download gff for
BO06711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 68..628 | 7..568 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:04 Download gff for
BO06711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6038041..6038193 | 28..180 | 100 | -> | Plus |
X | 6038263..6038565 | 181..483 | 100 | -> | Plus |
X | 6038876..6038959 | 484..568 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:47 Download gff for
BO06711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5932074..5932226 | 28..180 | 100 | -> | Plus |
arm_X | 5932296..5932598 | 181..483 | 100 | -> | Plus |
arm_X | 5932909..5932992 | 484..568 | 96 | | Plus |
BO06711.complete Sequence
580 bp (580 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630501
> BO06711.complete
GAAGTTATCAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTT
CCAGCATTCAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAG
TTGCTGGAGGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCC
CAAGAAGGACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGC
TGCTAAACGGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCC
TGGATGCCTACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCAT
GCAGCAAGTGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACG
TCATGTGTCCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGAC
AAGGACACCGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGC
CGTTGGACTCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAG
GCATCGGTATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCG
AAGCCCGTGAAGGCAAGCTTTCTAGACCAT
BO06711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 549 | CG5941-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG5941-RA | 549 | CG5941-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-RB | 798 | CG5941-RB | 78..623 | 17..562 | 2730 | 100 | Plus |
CG5941-RA | 1245 | CG5941-RA | 78..623 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6038262..6038565 | 180..483 | 1520 | 100 | Plus |
X | 23542271 | X | 6038041..6038193 | 28..180 | 765 | 100 | Plus |
X | 23542271 | X | 6038876..6038954 | 484..562 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:42:55 has no hits.
BO06711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:18 Download gff for
BO06711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:27 Download gff for
BO06711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 75..635 | 7..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:08 Download gff for
BO06711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 99..639 | 22..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:18 Download gff for
BO06711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 75..635 | 7..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:45 Download gff for
BO06711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5941-RA | 83..623 | 22..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:45 Download gff for
BO06711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6038038..6038193 | 22..180 | 97 | -> | Plus |
X | 6038263..6038565 | 181..483 | 100 | -> | Plus |
X | 6038876..6038954 | 484..564 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:08 Download gff for
BO06711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5932071..5932226 | 22..180 | 97 | -> | Plus |
arm_X | 5932296..5932598 | 181..483 | 100 | -> | Plus |
arm_X | 5932909..5932987 | 484..564 | 97 | | Plus |
BO06711.pep Sequence
Translation from 16 to 580
> BO06711.pep
MFKKFEEKDSISSIQQLKSSVQKGIRAKLLEAYPKLESHIDLILPKKDSY
RIAKCHDHIELLLNGAGDQVFFRHRDGPWMPTLRLLHKFPYFVTMQQVDK
GAIRFVLSGANVMCPGLTSPGACMTPADKDTVVAIMAEGKEHALAVGLLT
LSTQEILAKNKGIGIETYHFLNDGLWKSKPVKASFLDH
BO06711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5941-PB | 182 | CG5941-PB | 1..182 | 1..182 | 949 | 100 | Plus |
CG5941-PA | 182 | CG5941-PA | 1..182 | 1..182 | 949 | 100 | Plus |