Clone BO06715 Report

Search the DGRC for BO06715

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptasf1-RA
Protein status:BO06715.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO06715.3prime Sequence

686 bp (685 high quality bases) assembled on 2005-12-03

> BO06715.3prime
ATGGTCTAGAAAGCTTGCACATTCCATGGCCAGTGAGTTGGAGTTCTCGT
TCAAGGCCTTGATTCCGTTCTCCATTGGCATGGCCAAACTATTATCATCT
TCGGGATGGATAACTGCTGAAGCCGCCTCCGATGTGGACGGTCCATCGGT
GGCCATCTCATCTTGATGGCCGTTCTCCACGCCATTTCCATTCCCGTTGA
TGTGCCCGTAGTCCCAATTGATTTTGAATCGGGTGACGCGCGGCTTGCTG
GCCAGGATGTTTCGCGTCAGCTTCTCGAAAAGAGGCTTTGTTGGCGGGTT
CTCGCGCATCTCCGGGTCAGCGTAGTCGTTATTCACATAGTAGCCCACGC
GGACGAACTCCTGGCCGCGGTAGGAGCAGGTAAGCAGAACAATGGTAACG
CCCACCGCATCCGGTTCCGGGATCTTGCTGACGTCTGGCGGATCCGCCTG
GAAGACAAAGATGTGTCGCCCCTCAGGCACAGGTCCCACGTATATGGTGT
CCAGCACCTGGTCGTGCTCCTCGGACTCCGCCGAGCCTACATAGATCATC
TTCCACTCTAGATCCTCTTTTAGCTCCTCAATGCACTCGAACGTGAGTTC
GAACTGAAAGGGGTTGAAGAAGCTGCTCGGGTTGTCCAGCACCACCACGT
TGGTGATGTGCACCTTGGCCATGTCGACTGATAACT

BO06715.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9383-PA 657 asf1-RA 1..654 672..19 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 1129 CG9383-RB 285..939 673..19 3275 100 Minus
asf1-RA 1505 CG9383-RA 285..939 673..19 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19619178..19619832 673..19 3275 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:06:46 has no hits.

BO06715.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:30 Download gff for BO06715.3prime
Subject Subject Range Query Range Percent Splice Strand
asf1-PA 1..657 16..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:01 Download gff for BO06715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9383-PA 1..657 16..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:49 Download gff for BO06715.3prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 12..686 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:13 Download gff for BO06715.3prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 12..686 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:13 Download gff for BO06715.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19619169..19619840 12..686 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:49 Download gff for BO06715.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19612269..19612940 12..686 98   Minus

BO06715.5prime Sequence

686 bp (685 high quality bases) assembled on 2005-12-03

> BO06715.5prime
GAAGTTATCAGTCGACATGGCCAAGGTGCACATCACCAACGTGGTGGTGC
TGGACAACCCGAGCAGCTTCTTCAACCCCTTTCAGTTCGAACTCACGTTC
GAGTGCATTGAGGAGCTAAAAGAGGATCTAGAGTGGAAGATGATCTATGT
AGGCTCGGCGGAGTCCGAGGAGCACGACCAGGTGCTGGACACCATATACG
TGGGACCTGTGCCTGAGGGGCGACACATCTTTGTCTTCCAGGCGGATCCG
CCAGACGTCAGCAAGATCCCGGAACCGGATGCGGTGGGCGTTACCATTGT
TCTGCTTACCTGCTCCTACCGCGGCCAGGAGTTCGTCCGCGTGGGCTACT
ATGTGAATAACGACTACGCTGACCCGGAGATGCGCGAGAACCCGCCAACA
AAGCCTCTTTTCGAGAAGCTGACGCGAAACATCCTGGCCAGCAAGCCGCG
CGTCACCCGATTCAAAATCAATTGGGACTACGGGCACATCAACGGGAATG
GAAATGGCGTGGAGAACGGCCATCAAGATGAGATGGCCACCGATGGACCG
TCCACATCGGAGGCGGCTTCAGCAGTTATCCATCCCGAAGATGATAATAG
TTTGGCCATGCCAATGGAGAACGGAATCAAGGCCTTGAACGAGAACTCCA
ACTCACTGGCCATGGAATGTGCAAGCTTTCTAGACC

BO06715.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9383-PA 657 asf1-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 1129 CG9383-RB 285..939 16..670 3275 100 Plus
asf1-RA 1505 CG9383-RA 285..939 16..670 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19619178..19619832 16..670 3275 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:30:30 has no hits.

BO06715.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:31 Download gff for BO06715.5prime
Subject Subject Range Query Range Percent Splice Strand
asf1-PA 1..657 17..673 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:02 Download gff for BO06715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9383-PA 1..657 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:08 Download gff for BO06715.5prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 3..677 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:31 Download gff for BO06715.5prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 3..677 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:31 Download gff for BO06715.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19619169..19619840 3..677 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:08 Download gff for BO06715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19612269..19612940 3..677 98   Plus

BO06715.complete Sequence

688 bp (688 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630502

> BO06715.complete
GAAGTTATCAGTCGACATGGCCAAGGTGCACATCACCAACGTGGTGGTGC
TGGACAACCCGAGCAGCTTCTTCAACCCCTTTCAGTTCGAACTCACGTTC
GAGTGCATTGAGGAGCTAAAAGAGGATCTAGAGTGGAAGATGATCTATGT
AGGCTCGGCGGAGTCCGAGGAGCACGACCAGGTGCTGGACACCATATACG
TGGGACCTGTGCCTGAGGGGCGACACATCTTTGTCTTCCAGGCGGATCCG
CCAGACGTCAGCAAGATCCCGGAACCGGATGCGGTGGGCGTTACCATTGT
TCTGCTTACCTGCTCCTACCGCGGCCAGGAGTTCGTCCGCGTGGGCTACT
ATGTGAATAACGACTACGCTGACCCGGAGATGCGCGAGAACCCGCCAACA
AAGCCTCTTTTCGAGAAGCTGACGCGAAACATCCTGGCCAGCAAGCCGCG
CGTCACCCGATTCAAAATCAATTGGGACTACGGGCACATCAACGGGAATG
GAAATGGCGTGGAGAACGGCCATCAAGATGAGATGGCCACCGATGGACCG
TCCACATCGGAGGCGGCTTCAGCAGTTATCCATCCCGAAGATGATAATAG
TTTGGCCATGCCAATGGAGAACGGAATCAAGGCCTTGAACGAGAACTCCA
ACTCACTGGCCATGGAATGTGCAAGCTTTCTAGACCAT

BO06715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 657 CG9383-PB 1..654 17..670 3270 100 Plus
asf1-RA 657 CG9383-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 1129 CG9383-RB 285..939 16..670 3275 100 Plus
asf1-RA 1505 CG9383-RA 285..939 16..670 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19619178..19619832 16..670 3275 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:32:14 has no hits.

BO06715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:07 Download gff for BO06715.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 1..657 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:54 Download gff for BO06715.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 278..949 3..677 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:55 Download gff for BO06715.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 286..939 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:07 Download gff for BO06715.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 278..949 3..677 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:18 Download gff for BO06715.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 286..939 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:18 Download gff for BO06715.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19619179..19619832 17..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:55 Download gff for BO06715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19612279..19612932 17..672 99   Plus

BO06715.pep Sequence

Translation from 16 to 688

> BO06715.pep
MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKEDLEWKMIYVGSAES
EEHDQVLDTIYVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCS
YRGQEFVRVGYYVNNDYADPEMRENPPTKPLFEKLTRNILASKPRVTRFK
INWDYGHINGNGNGVENGHQDEMATDGPSTSEAASAVIHPEDDNSLAMPM
ENGIKALNENSNSLAMECASFLDH

BO06715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-PB 218 CG9383-PB 1..218 1..218 1162 100 Plus
asf1-PA 218 CG9383-PA 1..218 1..218 1162 100 Plus