Clone BO06716 Report

Search the DGRC for BO06716

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptial-RA
Protein status:BO06716.pep: validated full length
Sequenced Size:1021

Clone Sequence Records

BO06716.3prime Sequence

889 bp (887 high quality bases) assembled on 2005-12-03

> BO06716.3prime
ATGGTCTAGAAAGCTTGCATTTCTGGCCGTGTTCTCCTTGCCGCGCTCCC
GTTTCTGCAGCTGCAGCTCCCTTTCGGCCATTCCCGCCTTCACCCAATAA
TGGGTCATCACATCCACCAAGGTGATGCGGCCCTTGCTTTCCTTGCGAAG
CAGCCCGCCAATCAATTCCTTGCAGCCCTTGGACAAATGCGATGGGTAGG
AGATCTCCATGCGCCGGATCTTGCTGTAGGTGCTCTCCGTGCTGTTCGAC
TCGAAGGGCGGACAGCCGACGACGAACTCGTAGCACAGAATGCCCAGGCA
CCACTGGTCCACCGAGTCGTCGTAGGAGTTCCCATCCACCATCTCCGGCG
GCAGATAGTCCAGGGTGCCGCACAGAGTCCTGCGCTTGTTGTTCGGCGTG
TGCGCCGACCAACCAAAGTCGGCCAGCTTAAGGTCGTCCGTGCTGGTTAG
CAGAATGTTCTCCGGCTTCAGATCCCGATGGATCACGTTGTTCAGGTGAC
AGTAGTTGAGGGCATTCGCCACTTGGTAGGTGTACTTCGCAGACCGCGGT
TCATCGAATCGATGATTGGGTGCGCCACGCAGGTGCTTGAACAGCTCGCC
CTCGGACGCAATTTCCAGGGCCAGATAGATGCGGCTCTCGTCGTGGAACC
AAGTGAGCAGGCGCAGGATGTGCGGGTGCTTCAGTCGCGACTGGATCTCG
ATCTCGCGTAGAACCTGACGCTGCACGCAGCCCTTGCGCAGCTCCTCTTT
GAACATCACCTTCATGGCCACCAGATAGTGCGAGTGGCGCTCCCGCGCCA
AGTAGACACGTCCAAATTTGCCGCGTCCCAAGTGGGCGCCCATCTCAAAG
TCCCGGGGACTCCAATCGTATGGCTGTCCGTATGCGTCG

BO06716.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6620-PA 990 ial-RA 117..987 889..19 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 1183 CG6620-RA 234..1104 889..19 4355 100 Minus
aurA-RA 1577 CG3068-RA 1009..1139 468..338 180 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 154..871 3590 100 Plus
2L 23513712 2L 10856876..10857011 19..154 680 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:30:54 has no hits.

BO06716.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:32 Download gff for BO06716.3prime
Subject Subject Range Query Range Percent Splice Strand
ial-PA 117..990 16..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:03 Download gff for BO06716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6620-PA 117..990 16..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:13 Download gff for BO06716.3prime
Subject Subject Range Query Range Percent Splice Strand
ial-RA 234..1109 12..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:50 Download gff for BO06716.3prime
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 234..1109 12..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:50 Download gff for BO06716.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10856871..10857010 12..153 97 <- Plus
2L 10857071..10857788 154..871 100 <- Plus
2L 10857844..10857861 872..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:13 Download gff for BO06716.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10856871..10857010 12..153 97 <- Plus
arm_2L 10857071..10857788 154..871 100 <- Plus
arm_2L 10857844..10857861 872..889 100   Plus

BO06716.5prime Sequence

879 bp (841 high quality bases) assembled on 2005-12-03

> BO06716.5prime
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGGCTG
CAGGAATTGATTGGCGGGCTGCTTCGCAA

BO06716.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6620-PA 990 ial-RA 1..830 17..846 4150 100 Plus
CG6620-PA 990 ial-RA 836..863 852..879 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 1183 CG6620-RA 117..980 16..879 4275 99.8 Plus
aurA-RA 1577 CG3068-RA 1009..1139 554..684 180 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 868..151 3515 99.3 Minus
2L 23513712 2L 10857839..10857978 155..16 685 99.3 Minus
Blast to na_te.dros performed on 2015-02-04 20:08:09 has no hits.

BO06716.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:33 Download gff for BO06716.5prime
Subject Subject Range Query Range Percent Splice Strand
ial-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:04 Download gff for BO06716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6620-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:44 Download gff for BO06716.5prime
Subject Subject Range Query Range Percent Splice Strand
ial-RA 107..978 2..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:19 Download gff for BO06716.5prime
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 107..978 2..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:19 Download gff for BO06716.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10857068..10857788 151..871 99 <- Minus
2L 10857844..10857988 2..150 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:44 Download gff for BO06716.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10857068..10857788 151..871 99 <- Minus
arm_2L 10857844..10857988 2..150 96   Minus

BO06716.complete Sequence

1021 bp (1021 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630503

> BO06716.complete
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGCTGC
AAGGAATTGATTGGCGGGCTGCTTCGCAAGGAAAGCAAGGGCCGCATCAC
CTTGGTGGATGTGATGACCCATTATTGGGTGAAGGCGGGAATGGCCGAAA
GGGAGCTGCAGCTGCAGAAACGGGAGCGCGGCAAGGAGAACACGGCCAGA
AATGCAAGCTTTCTAGACCAT

BO06716.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 990 CG6620-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 1183 CG6620-RA 117..1104 16..1003 4940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 868..151 3590 100 Minus
2L 23513712 2L 10857839..10857978 155..16 685 99.3 Minus
2L 23513712 2L 10856876..10857011 1003..868 680 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:56:47 has no hits.

BO06716.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:42 Download gff for BO06716.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 1..990 17..1006 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:06 Download gff for BO06716.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 95..1097 2..1010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:43 Download gff for BO06716.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 118..1104 17..1005 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:42 Download gff for BO06716.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 95..1097 2..1010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:48 Download gff for BO06716.complete
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 118..1104 17..1005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:48 Download gff for BO06716.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10856872..10857010 869..1005 98 <- Minus
2L 10857071..10857788 151..868 100 <- Minus
2L 10857844..10857977 17..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:43 Download gff for BO06716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10856872..10857010 869..1005 98 <- Minus
arm_2L 10857071..10857788 151..868 100 <- Minus
arm_2L 10857844..10857977 17..150 100   Minus

BO06716.pep Sequence

Translation from 16 to 1021

> BO06716.pep
MTLSRAKHANRNHLPHLLAKVPEEHQEPIKNMCLKMMSHDAYGQPYDWSP
RDFEMGAHLGRGKFGRVYLARERHSHYLVAMKVMFKEELRKGCVQRQVLR
EIEIQSRLKHPHILRLLTWFHDESRIYLALEIASEGELFKHLRGAPNHRF
DEPRSAKYTYQVANALNYCHLNNVIHRDLKPENILLTSTDDLKLADFGWS
AHTPNNKRRTLCGTLDYLPPEMVDGNSYDDSVDQWCLGILCYEFVVGCPP
FESNSTESTYSKIRRMEISYPSHLSKGCKELIGGLLRKESKGRITLVDVM
THYWVKAGMAERELQLQKRERGKENTARNASFLDH

BO06716.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-PA 329 CG6620-PA 1..329 1..329 1774 100 Plus
aurA-PA 411 CG3068-PA 149..408 48..307 718 51.9 Plus
SAK-PA 769 CG7186-PA 1..264 36..302 470 38.2 Plus
Pka-C1-PD 353 CG4379-PD 45..277 52..287 412 37.7 Plus
Pka-C1-PC 353 CG4379-PC 45..277 52..287 412 37.7 Plus