Clone Sequence Records
BO06716.3prime Sequence
889 bp (887 high quality bases) assembled on 2005-12-03
> BO06716.3prime
ATGGTCTAGAAAGCTTGCATTTCTGGCCGTGTTCTCCTTGCCGCGCTCCC
GTTTCTGCAGCTGCAGCTCCCTTTCGGCCATTCCCGCCTTCACCCAATAA
TGGGTCATCACATCCACCAAGGTGATGCGGCCCTTGCTTTCCTTGCGAAG
CAGCCCGCCAATCAATTCCTTGCAGCCCTTGGACAAATGCGATGGGTAGG
AGATCTCCATGCGCCGGATCTTGCTGTAGGTGCTCTCCGTGCTGTTCGAC
TCGAAGGGCGGACAGCCGACGACGAACTCGTAGCACAGAATGCCCAGGCA
CCACTGGTCCACCGAGTCGTCGTAGGAGTTCCCATCCACCATCTCCGGCG
GCAGATAGTCCAGGGTGCCGCACAGAGTCCTGCGCTTGTTGTTCGGCGTG
TGCGCCGACCAACCAAAGTCGGCCAGCTTAAGGTCGTCCGTGCTGGTTAG
CAGAATGTTCTCCGGCTTCAGATCCCGATGGATCACGTTGTTCAGGTGAC
AGTAGTTGAGGGCATTCGCCACTTGGTAGGTGTACTTCGCAGACCGCGGT
TCATCGAATCGATGATTGGGTGCGCCACGCAGGTGCTTGAACAGCTCGCC
CTCGGACGCAATTTCCAGGGCCAGATAGATGCGGCTCTCGTCGTGGAACC
AAGTGAGCAGGCGCAGGATGTGCGGGTGCTTCAGTCGCGACTGGATCTCG
ATCTCGCGTAGAACCTGACGCTGCACGCAGCCCTTGCGCAGCTCCTCTTT
GAACATCACCTTCATGGCCACCAGATAGTGCGAGTGGCGCTCCCGCGCCA
AGTAGACACGTCCAAATTTGCCGCGTCCCAAGTGGGCGCCCATCTCAAAG
TCCCGGGGACTCCAATCGTATGGCTGTCCGTATGCGTCG
BO06716.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6620-PA | 990 | ial-RA | 117..987 | 889..19 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 1183 | CG6620-RA | 234..1104 | 889..19 | 4355 | 100 | Minus |
aurA-RA | 1577 | CG3068-RA | 1009..1139 | 468..338 | 180 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10857071..10857788 | 154..871 | 3590 | 100 | Plus |
2L | 23513712 | 2L | 10856876..10857011 | 19..154 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:30:54 has no hits.
BO06716.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:32 Download gff for
BO06716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-PA | 117..990 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:03 Download gff for
BO06716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6620-PA | 117..990 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:13 Download gff for
BO06716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 234..1109 | 12..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:50 Download gff for
BO06716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurB-RA | 234..1109 | 12..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:50 Download gff for
BO06716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10856871..10857010 | 12..153 | 97 | <- | Plus |
2L | 10857071..10857788 | 154..871 | 100 | <- | Plus |
2L | 10857844..10857861 | 872..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:13 Download gff for
BO06716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10856871..10857010 | 12..153 | 97 | <- | Plus |
arm_2L | 10857071..10857788 | 154..871 | 100 | <- | Plus |
arm_2L | 10857844..10857861 | 872..889 | 100 | | Plus |
BO06716.5prime Sequence
879 bp (841 high quality bases) assembled on 2005-12-03
> BO06716.5prime
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGGCTG
CAGGAATTGATTGGCGGGCTGCTTCGCAA
BO06716.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6620-PA | 990 | ial-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
CG6620-PA | 990 | ial-RA | 836..863 | 852..879 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 1183 | CG6620-RA | 117..980 | 16..879 | 4275 | 99.8 | Plus |
aurA-RA | 1577 | CG3068-RA | 1009..1139 | 554..684 | 180 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10857071..10857788 | 868..151 | 3515 | 99.3 | Minus |
2L | 23513712 | 2L | 10857839..10857978 | 155..16 | 685 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:08:09 has no hits.
BO06716.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:33 Download gff for
BO06716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:04 Download gff for
BO06716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6620-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:44 Download gff for
BO06716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 107..978 | 2..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:19 Download gff for
BO06716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurB-RA | 107..978 | 2..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:19 Download gff for
BO06716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10857068..10857788 | 151..871 | 99 | <- | Minus |
2L | 10857844..10857988 | 2..150 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:44 Download gff for
BO06716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10857068..10857788 | 151..871 | 99 | <- | Minus |
arm_2L | 10857844..10857988 | 2..150 | 96 | | Minus |
BO06716.complete Sequence
1021 bp (1021 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630503
> BO06716.complete
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGCTGC
AAGGAATTGATTGGCGGGCTGCTTCGCAAGGAAAGCAAGGGCCGCATCAC
CTTGGTGGATGTGATGACCCATTATTGGGTGAAGGCGGGAATGGCCGAAA
GGGAGCTGCAGCTGCAGAAACGGGAGCGCGGCAAGGAGAACACGGCCAGA
AATGCAAGCTTTCTAGACCAT
BO06716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 990 | CG6620-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 1183 | CG6620-RA | 117..1104 | 16..1003 | 4940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10857071..10857788 | 868..151 | 3590 | 100 | Minus |
2L | 23513712 | 2L | 10857839..10857978 | 155..16 | 685 | 99.3 | Minus |
2L | 23513712 | 2L | 10856876..10857011 | 1003..868 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:56:47 has no hits.
BO06716.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:42 Download gff for
BO06716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 1..990 | 17..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:06 Download gff for
BO06716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 95..1097 | 2..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:43 Download gff for
BO06716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 118..1104 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:42 Download gff for
BO06716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 95..1097 | 2..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:48 Download gff for
BO06716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurB-RA | 118..1104 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:48 Download gff for
BO06716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10856872..10857010 | 869..1005 | 98 | <- | Minus |
2L | 10857071..10857788 | 151..868 | 100 | <- | Minus |
2L | 10857844..10857977 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:43 Download gff for
BO06716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10856872..10857010 | 869..1005 | 98 | <- | Minus |
arm_2L | 10857071..10857788 | 151..868 | 100 | <- | Minus |
arm_2L | 10857844..10857977 | 17..150 | 100 | | Minus |
BO06716.pep Sequence
Translation from 16 to 1021
> BO06716.pep
MTLSRAKHANRNHLPHLLAKVPEEHQEPIKNMCLKMMSHDAYGQPYDWSP
RDFEMGAHLGRGKFGRVYLARERHSHYLVAMKVMFKEELRKGCVQRQVLR
EIEIQSRLKHPHILRLLTWFHDESRIYLALEIASEGELFKHLRGAPNHRF
DEPRSAKYTYQVANALNYCHLNNVIHRDLKPENILLTSTDDLKLADFGWS
AHTPNNKRRTLCGTLDYLPPEMVDGNSYDDSVDQWCLGILCYEFVVGCPP
FESNSTESTYSKIRRMEISYPSHLSKGCKELIGGLLRKESKGRITLVDVM
THYWVKAGMAERELQLQKRERGKENTARNASFLDH
BO06716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-PA | 329 | CG6620-PA | 1..329 | 1..329 | 1774 | 100 | Plus |
aurA-PA | 411 | CG3068-PA | 149..408 | 48..307 | 718 | 51.9 | Plus |
SAK-PA | 769 | CG7186-PA | 1..264 | 36..302 | 470 | 38.2 | Plus |
Pka-C1-PD | 353 | CG4379-PD | 45..277 | 52..287 | 412 | 37.7 | Plus |
Pka-C1-PC | 353 | CG4379-PC | 45..277 | 52..287 | 412 | 37.7 | Plus |