Clone Sequence Records
BO06717.3prime Sequence
868 bp (866 high quality bases) assembled on 2005-12-03
> BO06717.3prime
ATGGTCTAGAAAGCTTGCTATGCTATCGCCAGTGCGCATGTGGGGACGAC
GGTGCCAGTGATTGGGATTATTGTACTCAATCAATCGGGTCAAATCAAAG
CCAGCTGGCACTATATTGGGTGGCTTAACTCCGCTCAACATGCGAGTTTC
TTTTCGAGCTGATGGTGGTATGGGAATGTCCGGAAAGGGAGACACATACA
CCACCTTCTCCACGGGTTTGTCACTTTTCGGAGCAGGCGTGATGGTTTTT
GCTGGCTCCGGATCCTTCTTGTCAGAATCCTGGTCAAAATAGGCCTCCAG
GGCCATAGAAAACTGCTGCAAGCGAGAAACCTTGGCCTGGCAAGGTTTCT
GCTGCGAATCGATCCAAATTTCGGTGAAGGCGTGTTTTTGTAAGGCCTCC
GTTTCGGGATTGGAGATCAGGTGCTCTTTTCGGACTGTTACTGAGTGGTC
AAGGTCAAAGTGTTTTATGCATGGTATCTGGCTCGAGGAAAGTCCCGGAA
CATCTCTGGGACACAAGGGCACTGGTCTCTGCTTCTGCTCACTGATCGGC
GAAACGGTAAACTTCTTGGGAGACTTGAAACAGCCCGCAACCTGTGTGGG
CTTGCCAGCGGAGACGCCATCGCAGGTGGATGAGTCGCTGGAATGGACCT
CCAAAACGGGCGACTTTGGCTTTACGAAGACGTCGGAAGGCGTGGGCTTC
AAAGTATTTCCTGCGCCCTGGCCCAGCTGGGCGGGTGCACCAACCATTTT
TTTTTCCATGGAAATCTCATCCGCCGAGCCGGAATCAAAGTCCGCGGCGC
TGTCGCAGTCGCTCTCCGAGAGCGAGAGGCTAAGGTTGTCCATGATATCT
TCGCTTTGGTCGAACGAG
BO06717.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-PA | 909 | CG5194-RA | 57..906 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 1113 | CG5194-RA | 134..983 | 868..19 | 4250 | 100 | Minus |
CG5194-RB | 1095 | CG5194-RB | 134..965 | 868..19 | 3970 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9009032..9009530 | 247..745 | 2495 | 100 | Plus |
3L | 28110227 | 3L | 9008754..9008981 | 19..246 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 9009581..9009705 | 744..868 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:38:57 has no hits.
BO06717.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:34 Download gff for
BO06717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 57..909 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:06 Download gff for
BO06717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 57..909 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:16:39 Download gff for
BO06717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 134..990 | 11..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:27 Download gff for
BO06717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 134..990 | 11..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:27 Download gff for
BO06717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9008747..9008981 | 11..246 | 98 | <- | Plus |
3L | 9009032..9009529 | 247..744 | 100 | <- | Plus |
3L | 9009582..9009705 | 745..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:16:39 Download gff for
BO06717.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9001847..9002081 | 11..246 | 98 | <- | Plus |
arm_3L | 9002132..9002629 | 247..744 | 100 | <- | Plus |
arm_3L | 9002682..9002805 | 745..868 | 100 | | Plus |
BO06717.5prime Sequence
861 bp (860 high quality bases) assembled on 2005-12-03
> BO06717.5prime
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAANAGAAACTCGCA
TGTTGAGCGGAGTTAGCCACCCAATATAGTGCCAGCTGGCTTTGATTTGA
CCCCGATGATT
BO06717.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-PA | 909 | CG5194-RA | 1..799 | 17..815 | 3976 | 99.8 | Plus |
CG5194-PA | 909 | CG5194-RA | 800..838 | 815..853 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 1113 | CG5194-RA | 78..915 | 17..853 | 4154 | 99.8 | Plus |
CG5194-RB | 1095 | CG5194-RB | 78..897 | 17..853 | 3874 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9009032..9009530 | 694..196 | 2495 | 100 | Minus |
3L | 28110227 | 3L | 9009581..9009761 | 197..17 | 905 | 100 | Minus |
3L | 28110227 | 3L | 9008822..9008981 | 853..695 | 739 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:31:23 has no hits.
BO06717.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:35 Download gff for
BO06717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:07 Download gff for
BO06717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:21 Download gff for
BO06717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 71..923 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:21 Download gff for
BO06717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 71..923 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:21 Download gff for
BO06717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9008814..9008981 | 695..861 | 97 | <- | Minus |
3L | 9009032..9009529 | 197..694 | 100 | <- | Minus |
3L | 9009582..9009768 | 9..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:21 Download gff for
BO06717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9001914..9002081 | 695..861 | 97 | <- | Minus |
arm_3L | 9002132..9002629 | 197..694 | 100 | <- | Minus |
arm_3L | 9002682..9002868 | 9..196 | 97 | | Minus |
BO06717.complete Sequence
940 bp (940 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630504
> BO06717.complete
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAAAAGAAACTCGCA
TGTTGAGCGGAGTTAAGCCACCCAATATAGTGCCAGCTGGCTTTGATTTG
ACCCGATTGATTGAGTACAATAATCCCAATCACTGGCACCGTCGTCCCCA
CATGCGCACTGGCGATAGCATAGCAAGCTTTCTAGACCAT
BO06717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 909 | CG5194-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
CG5194-RB | 891 | CG5194-PB | 1..888 | 17..922 | 4225 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-RA | 1113 | CG5194-RA | 78..983 | 17..922 | 4530 | 100 | Plus |
CG5194-RB | 1095 | CG5194-RB | 78..965 | 17..922 | 4225 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9009032..9009530 | 694..196 | 2495 | 100 | Minus |
3L | 28110227 | 3L | 9008754..9008981 | 922..695 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 9009581..9009761 | 197..17 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:06 has no hits.
BO06717.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:43 Download gff for
BO06717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:09 Download gff for
BO06717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 84..1003 | 9..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:59 Download gff for
BO06717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 78..983 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:43 Download gff for
BO06717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 84..1003 | 9..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:04 Download gff for
BO06717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5194-RA | 78..983 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:04 Download gff for
BO06717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9008752..9008981 | 695..924 | 99 | <- | Minus |
3L | 9009032..9009529 | 197..694 | 100 | <- | Minus |
3L | 9009582..9009761 | 17..196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:59 Download gff for
BO06717.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9001852..9002081 | 695..924 | 99 | <- | Minus |
arm_3L | 9002132..9002629 | 197..694 | 100 | <- | Minus |
arm_3L | 9002682..9002861 | 17..196 | 100 | | Minus |
BO06717.pep Sequence
Translation from 16 to 940
> BO06717.pep
MSSLVDTSHSDIDDNDSFHSFDQSEDIMDNLSLSLSESDCDSAADFDSGS
ADEISMEKKMVGAPAQLGQGAGNTLKPTPSDVFVKPKSPVLEVHSSDSST
CDGVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRDVPGLSSSQI
PCIKHFDLDHSVTVRKEHLISNPETEALQKHAFTEIWIDSQQKPCQAKVS
RLQQFSMALEAYFDQDSDKKDPEPAKTITPAPKSDKPVEKVVYVSPFPDI
PIPPSARKETRMLSGVKPPNIVPAGFDLTRLIEYNNPNHWHRRPHMRTGD
SIASFLDH
BO06717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5194-PA | 302 | CG5194-PA | 1..302 | 1..302 | 1594 | 100 | Plus |
CG5194-PB | 296 | CG5194-PB | 1..296 | 1..302 | 1547 | 98 | Plus |