Clone BO06717 Report

Search the DGRC for BO06717

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5194-RA
Protein status:BO06717.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO06717.3prime Sequence

868 bp (866 high quality bases) assembled on 2005-12-03

> BO06717.3prime
ATGGTCTAGAAAGCTTGCTATGCTATCGCCAGTGCGCATGTGGGGACGAC
GGTGCCAGTGATTGGGATTATTGTACTCAATCAATCGGGTCAAATCAAAG
CCAGCTGGCACTATATTGGGTGGCTTAACTCCGCTCAACATGCGAGTTTC
TTTTCGAGCTGATGGTGGTATGGGAATGTCCGGAAAGGGAGACACATACA
CCACCTTCTCCACGGGTTTGTCACTTTTCGGAGCAGGCGTGATGGTTTTT
GCTGGCTCCGGATCCTTCTTGTCAGAATCCTGGTCAAAATAGGCCTCCAG
GGCCATAGAAAACTGCTGCAAGCGAGAAACCTTGGCCTGGCAAGGTTTCT
GCTGCGAATCGATCCAAATTTCGGTGAAGGCGTGTTTTTGTAAGGCCTCC
GTTTCGGGATTGGAGATCAGGTGCTCTTTTCGGACTGTTACTGAGTGGTC
AAGGTCAAAGTGTTTTATGCATGGTATCTGGCTCGAGGAAAGTCCCGGAA
CATCTCTGGGACACAAGGGCACTGGTCTCTGCTTCTGCTCACTGATCGGC
GAAACGGTAAACTTCTTGGGAGACTTGAAACAGCCCGCAACCTGTGTGGG
CTTGCCAGCGGAGACGCCATCGCAGGTGGATGAGTCGCTGGAATGGACCT
CCAAAACGGGCGACTTTGGCTTTACGAAGACGTCGGAAGGCGTGGGCTTC
AAAGTATTTCCTGCGCCCTGGCCCAGCTGGGCGGGTGCACCAACCATTTT
TTTTTCCATGGAAATCTCATCCGCCGAGCCGGAATCAAAGTCCGCGGCGC
TGTCGCAGTCGCTCTCCGAGAGCGAGAGGCTAAGGTTGTCCATGATATCT
TCGCTTTGGTCGAACGAG

BO06717.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 909 CG5194-RA 57..906 868..19 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 1113 CG5194-RA 134..983 868..19 4250 100 Minus
CG5194-RB 1095 CG5194-RB 134..965 868..19 3970 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9009032..9009530 247..745 2495 100 Plus
3L 28110227 3L 9008754..9008981 19..246 1140 100 Plus
3L 28110227 3L 9009581..9009705 744..868 625 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:38:57 has no hits.

BO06717.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:34 Download gff for BO06717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 57..909 15..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:06 Download gff for BO06717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 57..909 15..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:16:39 Download gff for BO06717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 134..990 11..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:27 Download gff for BO06717.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 134..990 11..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:27 Download gff for BO06717.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9008747..9008981 11..246 98 <- Plus
3L 9009032..9009529 247..744 100 <- Plus
3L 9009582..9009705 745..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:16:39 Download gff for BO06717.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9001847..9002081 11..246 98 <- Plus
arm_3L 9002132..9002629 247..744 100 <- Plus
arm_3L 9002682..9002805 745..868 100   Plus

BO06717.5prime Sequence

861 bp (860 high quality bases) assembled on 2005-12-03

> BO06717.5prime
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAANAGAAACTCGCA
TGTTGAGCGGAGTTAGCCACCCAATATAGTGCCAGCTGGCTTTGATTTGA
CCCCGATGATT

BO06717.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 909 CG5194-RA 1..799 17..815 3976 99.8 Plus
CG5194-PA 909 CG5194-RA 800..838 815..853 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 1113 CG5194-RA 78..915 17..853 4154 99.8 Plus
CG5194-RB 1095 CG5194-RB 78..897 17..853 3874 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9009032..9009530 694..196 2495 100 Minus
3L 28110227 3L 9009581..9009761 197..17 905 100 Minus
3L 28110227 3L 9008822..9008981 853..695 739 98.8 Minus
Blast to na_te.dros performed on 2015-02-12 23:31:23 has no hits.

BO06717.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:35 Download gff for BO06717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 1..846 17..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:07 Download gff for BO06717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-PA 1..846 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:21 Download gff for BO06717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 71..923 9..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:21 Download gff for BO06717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 71..923 9..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:21 Download gff for BO06717.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9008814..9008981 695..861 97 <- Minus
3L 9009032..9009529 197..694 100 <- Minus
3L 9009582..9009768 9..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:21 Download gff for BO06717.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9001914..9002081 695..861 97 <- Minus
arm_3L 9002132..9002629 197..694 100 <- Minus
arm_3L 9002682..9002868 9..196 97   Minus

BO06717.complete Sequence

940 bp (940 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630504

> BO06717.complete
GAAGTTATCAGTCGACATGAGCTCTCTTGTTGATACCAGTCACTCGGATA
TCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCGAAGATATCATG
GACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGA
CTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTG
GTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACG
CCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTC
CAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGG
TTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGT
GAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACT
TTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAG
TAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAACGGAGGCCTTA
CAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAGCAGAAACCTTG
CCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGCCCTGGAGGCCT
ATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAGCAAAAACCATC
ACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTGGTGTATGTGTC
TCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAAAAGAAACTCGCA
TGTTGAGCGGAGTTAAGCCACCCAATATAGTGCCAGCTGGCTTTGATTTG
ACCCGATTGATTGAGTACAATAATCCCAATCACTGGCACCGTCGTCCCCA
CATGCGCACTGGCGATAGCATAGCAAGCTTTCTAGACCAT

BO06717.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 909 CG5194-PA 1..906 17..922 4530 100 Plus
CG5194-RB 891 CG5194-PB 1..888 17..922 4225 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 1113 CG5194-RA 78..983 17..922 4530 100 Plus
CG5194-RB 1095 CG5194-RB 78..965 17..922 4225 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9009032..9009530 694..196 2495 100 Minus
3L 28110227 3L 9008754..9008981 922..695 1140 100 Minus
3L 28110227 3L 9009581..9009761 197..17 905 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:06 has no hits.

BO06717.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:43 Download gff for BO06717.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:09 Download gff for BO06717.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 84..1003 9..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:59 Download gff for BO06717.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 78..983 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:43 Download gff for BO06717.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 84..1003 9..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:04 Download gff for BO06717.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 78..983 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:04 Download gff for BO06717.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9008752..9008981 695..924 99 <- Minus
3L 9009032..9009529 197..694 100 <- Minus
3L 9009582..9009761 17..196 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:59 Download gff for BO06717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9001852..9002081 695..924 99 <- Minus
arm_3L 9002132..9002629 197..694 100 <- Minus
arm_3L 9002682..9002861 17..196 100   Minus

BO06717.pep Sequence

Translation from 16 to 940

> BO06717.pep
MSSLVDTSHSDIDDNDSFHSFDQSEDIMDNLSLSLSESDCDSAADFDSGS
ADEISMEKKMVGAPAQLGQGAGNTLKPTPSDVFVKPKSPVLEVHSSDSST
CDGVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRDVPGLSSSQI
PCIKHFDLDHSVTVRKEHLISNPETEALQKHAFTEIWIDSQQKPCQAKVS
RLQQFSMALEAYFDQDSDKKDPEPAKTITPAPKSDKPVEKVVYVSPFPDI
PIPPSARKETRMLSGVKPPNIVPAGFDLTRLIEYNNPNHWHRRPHMRTGD
SIASFLDH

BO06717.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 302 CG5194-PA 1..302 1..302 1594 100 Plus
CG5194-PB 296 CG5194-PB 1..296 1..302 1547 98 Plus