Clone BO06718 Report

Search the DGRC for BO06718

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG1896-RA
Protein status:BO06718.pep: validated full length
Sequenced Size:772

Clone Sequence Records

BO06718.3prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-03

> BO06718.3prime
ATGGTCTAGAAAGCTTGCAGTTAAGGATAGTCGATAGCCTATCCACTGAG
CTGTAGGCTTTGTTGGCGGTAGCACCCATCCTCTGGGTATAGAGGAGCCT
CTTCCACAGTAGCTTATGTAAGAATCCCATGTGGAGCGAATTTCAAGAAA
TTTCCCCTTATTTAATTTGGGAGTTGGCAAGGATCGGCCGAAGAACACAG
CCTTCCATTGAGATTCAAGTGAAGCCACCTTCTTGGACTCCTTGACATGG
CCAGCTTGAGTCTCTTCTTGGACTCTGCGCCAAACAAGACGCATGTGGGT
CAGTTTTTGGCAAAGGGCGGCTCTGTCTCCTCCACGAGACTCGCAAAGTT
TCTCCAGAAGATCAAAGGTCTCCAAAATGGAGGCAGCATCGCGTTGTTTT
CGCAGGGATATGTGCTTCGCTTGTTCCAGTGCGGTATTTCGGGGCGGTTC
TATGGAGAACTTCTGTTCTGCAGCCTCAGATTTGACGGTTGCACGTATCA
CCCGATGTTGGCTTCGTCTATATAAGCGTCGCCGGCGTTTTCTTTGTTTT
TGTTCGTCGACTACTTGTTGGCCCGGTACTTGGTCAAGTTCATCCAGCAG
GGTTGCCGTGCTCCGCTGCAGCTCCTCCGCCCGGTGCACATCGAAATCGC
GACCTGCTCCACAGCTCTGTTGCTCCAGTTGCCCCAAACTCGATATAACT
TGCTGAATCTTGGCTTTAACTTCACTTAATCTATGCTTTTTGTGCGGCGG
AGTCATGTCGACTGATAACT

BO06718.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-PA 741 CG1896-RA 1..738 756..19 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 835 CG1896-RA 38..775 756..19 3690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31744319..31744938 756..137 3100 100 Minus
3R 32079331 3R 31745000..31745118 137..19 595 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:41:17 has no hits.

BO06718.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:36 Download gff for BO06718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:08 Download gff for BO06718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:31 Download gff for BO06718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..778 15..756 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:21 Download gff for BO06718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..778 15..756 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:21 Download gff for BO06718.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31744319..31744938 137..756 100 -> Minus
3R 31745001..31745121 15..136 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:31 Download gff for BO06718.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27570041..27570660 137..756 100 -> Minus
arm_3R 27570723..27570843 15..136 98   Minus

BO06718.5prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-03

> BO06718.5prime
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTGCAAGCTTTCTAGACC

BO06718.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-PA 741 CG1896-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 835 CG1896-RA 38..775 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31744319..31744938 17..636 3100 100 Plus
3R 32079331 3R 31745000..31745118 636..754 595 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:08:21 has no hits.

BO06718.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:37 Download gff for BO06718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:10 Download gff for BO06718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:47 Download gff for BO06718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..778 17..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:21 Download gff for BO06718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..778 17..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:21 Download gff for BO06718.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31744319..31744938 17..636 100 -> Plus
3R 31745001..31745121 637..758 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:47 Download gff for BO06718.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27570041..27570660 17..636 100 -> Plus
arm_3R 27570723..27570843 637..758 98   Plus

BO06718.complete Sequence

772 bp (772 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630505

> BO06718.complete
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTGCAAGCTTTCTAGACCAT

BO06718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 741 CG1896-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-RA 835 CG1896-RA 38..775 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31744319..31744938 17..636 3100 100 Plus
3R 32079331 3R 31745000..31745118 636..754 595 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:12:35 has no hits.

BO06718.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:44 Download gff for BO06718.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:11 Download gff for BO06718.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 33..773 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:48 Download gff for BO06718.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..775 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:45 Download gff for BO06718.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 33..773 17..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:18 Download gff for BO06718.complete
Subject Subject Range Query Range Percent Splice Strand
CG1896-RA 38..775 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:18 Download gff for BO06718.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31744319..31744938 17..636 100 -> Plus
3R 31745001..31745118 637..756 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:48 Download gff for BO06718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27570041..27570660 17..636 100 -> Plus
arm_3R 27570723..27570840 637..756 98   Plus

BO06718.pep Sequence

Translation from 16 to 772

> BO06718.pep
MTPPHKKHRLSEVKAKIQQVISSLGQLEQQSCGAGRDFDVHRAEELQRST
ATLLDELDQVPGQQVVDEQKQRKRRRRLYRRSQHRVIRATVKSEAAEQKF
SIEPPRNTALEQAKHISLRKQRDAASILETFDLLEKLCESRGGDRAALCQ
KLTHMRLVWRRVQEETQAGHVKESKKVASLESQWKAVFFGRSLPTPKLNK
GKFLEIRSTWDSYISYCGRGSSIPRGWVLPPTKPTAQWIGYRLSLTASFL
DH

BO06718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1896-PA 246 CG1896-PA 1..246 1..246 1271 100 Plus