Clone Sequence Records
BO06718.3prime Sequence
770 bp (769 high quality bases) assembled on 2005-12-03
> BO06718.3prime
ATGGTCTAGAAAGCTTGCAGTTAAGGATAGTCGATAGCCTATCCACTGAG
CTGTAGGCTTTGTTGGCGGTAGCACCCATCCTCTGGGTATAGAGGAGCCT
CTTCCACAGTAGCTTATGTAAGAATCCCATGTGGAGCGAATTTCAAGAAA
TTTCCCCTTATTTAATTTGGGAGTTGGCAAGGATCGGCCGAAGAACACAG
CCTTCCATTGAGATTCAAGTGAAGCCACCTTCTTGGACTCCTTGACATGG
CCAGCTTGAGTCTCTTCTTGGACTCTGCGCCAAACAAGACGCATGTGGGT
CAGTTTTTGGCAAAGGGCGGCTCTGTCTCCTCCACGAGACTCGCAAAGTT
TCTCCAGAAGATCAAAGGTCTCCAAAATGGAGGCAGCATCGCGTTGTTTT
CGCAGGGATATGTGCTTCGCTTGTTCCAGTGCGGTATTTCGGGGCGGTTC
TATGGAGAACTTCTGTTCTGCAGCCTCAGATTTGACGGTTGCACGTATCA
CCCGATGTTGGCTTCGTCTATATAAGCGTCGCCGGCGTTTTCTTTGTTTT
TGTTCGTCGACTACTTGTTGGCCCGGTACTTGGTCAAGTTCATCCAGCAG
GGTTGCCGTGCTCCGCTGCAGCTCCTCCGCCCGGTGCACATCGAAATCGC
GACCTGCTCCACAGCTCTGTTGCTCCAGTTGCCCCAAACTCGATATAACT
TGCTGAATCTTGGCTTTAACTTCACTTAATCTATGCTTTTTGTGCGGCGG
AGTCATGTCGACTGATAACT
BO06718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-PA | 741 | CG1896-RA | 1..738 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 835 | CG1896-RA | 38..775 | 756..19 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31744319..31744938 | 756..137 | 3100 | 100 | Minus |
3R | 32079331 | 3R | 31745000..31745118 | 137..19 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:41:17 has no hits.
BO06718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:36 Download gff for
BO06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:08 Download gff for
BO06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:31 Download gff for
BO06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..778 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:21 Download gff for
BO06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..778 | 15..756 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:21 Download gff for
BO06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31744319..31744938 | 137..756 | 100 | -> | Minus |
3R | 31745001..31745121 | 15..136 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:31 Download gff for
BO06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27570041..27570660 | 137..756 | 100 | -> | Minus |
arm_3R | 27570723..27570843 | 15..136 | 98 | | Minus |
BO06718.5prime Sequence
770 bp (769 high quality bases) assembled on 2005-12-03
> BO06718.5prime
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTGCAAGCTTTCTAGACC
BO06718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-PA | 741 | CG1896-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 835 | CG1896-RA | 38..775 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31744319..31744938 | 17..636 | 3100 | 100 | Plus |
3R | 32079331 | 3R | 31745000..31745118 | 636..754 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:08:21 has no hits.
BO06718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:37 Download gff for
BO06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:10 Download gff for
BO06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:47 Download gff for
BO06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..778 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:21 Download gff for
BO06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..778 | 17..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:21 Download gff for
BO06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31744319..31744938 | 17..636 | 100 | -> | Plus |
3R | 31745001..31745121 | 637..758 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:47 Download gff for
BO06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27570041..27570660 | 17..636 | 100 | -> | Plus |
arm_3R | 27570723..27570843 | 637..758 | 98 | | Plus |
BO06718.complete Sequence
772 bp (772 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630505
> BO06718.complete
GAAGTTATCAGTCGACATGACTCCGCCGCACAAAAAGCATAGATTAAGTG
AAGTTAAAGCCAAGATTCAGCAAGTTATATCGAGTTTGGGGCAACTGGAG
CAACAGAGCTGTGGAGCAGGTCGCGATTTCGATGTGCACCGGGCGGAGGA
GCTGCAGCGGAGCACGGCAACCCTGCTGGATGAACTTGACCAAGTACCGG
GCCAACAAGTAGTCGACGAACAAAAACAAAGAAAACGCCGGCGACGCTTA
TATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGC
TGCAGAACAGAAGTTCTCCATAGAACCGCCCCGAAATACCGCACTGGAAC
AAGCGAAGCACATATCCCTGCGAAAACAACGCGATGCTGCCTCCATTTTG
GAGACCTTTGATCTTCTGGAGAAACTTTGCGAGTCTCGTGGAGGAGACAG
AGCCGCCCTTTGCCAAAAACTGACCCACATGCGTCTTGTTTGGCGCAGAG
TCCAAGAAGAGACTCAAGCTGGCCATGTCAAGGAGTCCAAGAAGGTGGCT
TCACTTGAATCTCAATGGAAGGCTGTGTTCTTCGGCCGATCCTTGCCAAC
TCCCAAATTAAATAAGGGGAAATTTCTTGAAATTCGCTCCACATGGGATT
CTTACATAAGCTACTGTGGAAGAGGCTCCTCTATACCCAGAGGATGGGTG
CTACCGCCAACAAAGCCTACAGCTCAGTGGATAGGCTATCGACTATCCTT
AACTGCAAGCTTTCTAGACCAT
BO06718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 741 | CG1896-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-RA | 835 | CG1896-RA | 38..775 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31744319..31744938 | 17..636 | 3100 | 100 | Plus |
3R | 32079331 | 3R | 31745000..31745118 | 636..754 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:12:35 has no hits.
BO06718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:44 Download gff for
BO06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:11 Download gff for
BO06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 33..773 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:48 Download gff for
BO06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..775 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:45 Download gff for
BO06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 33..773 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:18 Download gff for
BO06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1896-RA | 38..775 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:18 Download gff for
BO06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31744319..31744938 | 17..636 | 100 | -> | Plus |
3R | 31745001..31745118 | 637..756 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:48 Download gff for
BO06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27570041..27570660 | 17..636 | 100 | -> | Plus |
arm_3R | 27570723..27570840 | 637..756 | 98 | | Plus |
BO06718.pep Sequence
Translation from 16 to 772
> BO06718.pep
MTPPHKKHRLSEVKAKIQQVISSLGQLEQQSCGAGRDFDVHRAEELQRST
ATLLDELDQVPGQQVVDEQKQRKRRRRLYRRSQHRVIRATVKSEAAEQKF
SIEPPRNTALEQAKHISLRKQRDAASILETFDLLEKLCESRGGDRAALCQ
KLTHMRLVWRRVQEETQAGHVKESKKVASLESQWKAVFFGRSLPTPKLNK
GKFLEIRSTWDSYISYCGRGSSIPRGWVLPPTKPTAQWIGYRLSLTASFL
DH
BO06718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1896-PA | 246 | CG1896-PA | 1..246 | 1..246 | 1271 | 100 | Plus |