Clone BO06719 Report

Search the DGRC for BO06719

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG9335-RA
Protein status:BO06719.pep: validated full length
Sequenced Size:532

Clone Sequence Records

BO06719.5prime Sequence

530 bp (529 high quality bases) assembled on 2005-12-03

> BO06719.5prime
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCGCAAGCTTTCTAGACC

BO06719.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9335-PA 501 CG9335-RA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 1150 CG9335-RA 171..669 16..514 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20856140..20856356 83..299 1085 100 Plus
2L 23513712 2L 20856418..20856632 300..514 1075 100 Plus
2L 23513712 2L 20852748..20852818 16..86 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:48:31 has no hits.

BO06719.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:39 Download gff for BO06719.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 17..518 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:12 Download gff for BO06719.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:54 Download gff for BO06719.5prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 10..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:30 Download gff for BO06719.5prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 10..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:30 Download gff for BO06719.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20852745..20852818 10..86 96 -> Plus
2L 20856144..20856356 87..299 100 -> Plus
2L 20856418..20856637 300..520 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:54 Download gff for BO06719.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20852745..20852818 10..86 96 -> Plus
arm_2L 20856144..20856356 87..299 100 -> Plus
arm_2L 20856418..20856637 300..520 99   Plus

BO06719.3prime Sequence

530 bp (529 high quality bases) assembled on 2005-12-03

> BO06719.3prime
ATGGTCTAGAAAGCTTGCGATGGCAAACTGTTGGATGAGGCCCGCGATGG
GCAGGAGCAGCAGCATCTCCAAAATGGATGCACCTGCTAAGGCTCCGTTG
CAGCGATCGGTGAGGCAGTCCTCGCAGAATATCCGCCGCACGTTCTTCTC
CGGACTGGTGATGTTGCACAGCTCCACGGGATCTGATTTGTTGGTGTAGT
AGCAGAATCGCTTGGTGATCAGCTTGCCATTATTTTCCTCCACGGTCTTG
CGGCAAACGGCCCTCTCGTGATCGGAGTTAATGGTGCCGTTGCAGCTCCT
TAGCAGATTTATATTCCGCTCCTTGATCAGGTCAGTGGGAATGTTGTCCT
CCTGGAAGGTCACGTCGCAGAAGTCCTCCGCCCCAATTGTGTCCGAGCTA
CAGTGCCAGCACTGCAGGTGATGCTTCTGGTGCTGCTCATTTATGGCTGT
GATGTGCCAGGCATTGGCCAGCAAGAAGAGACCAGCCAGAAAGGCTTTCA
TCGGCACCGCTGACATGTCGACTGATAACT

BO06719.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9335-PA 501 CG9335-RA 1..498 516..19 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 1150 CG9335-RA 171..669 517..19 2495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20856140..20856356 450..234 1085 100 Minus
2L 23513712 2L 20856418..20856632 233..19 1075 100 Minus
2L 23513712 2L 20852748..20852818 517..447 355 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:08:32 has no hits.

BO06719.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:38 Download gff for BO06719.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 15..516 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:11 Download gff for BO06719.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9335-PA 1..501 15..516 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:48 Download gff for BO06719.3prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 13..523 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:23 Download gff for BO06719.3prime
Subject Subject Range Query Range Percent Splice Strand
twit-RA 168..674 13..523 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:23 Download gff for BO06719.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20852745..20852818 447..523 96 -> Minus
2L 20856144..20856356 234..446 100 -> Minus
2L 20856418..20856637 13..233 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:48 Download gff for BO06719.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20852745..20852818 447..523 96 -> Minus
arm_2L 20856144..20856356 234..446 100 -> Minus
arm_2L 20856418..20856637 13..233 99   Minus

BO06719.complete Sequence

532 bp (532 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630506

> BO06719.complete
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCGCAAGCTTTCTAGACCAT

BO06719.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 501 CG9335-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
twit-RA 1150 CG9335-RA 171..669 16..514 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20856140..20856356 83..299 1085 100 Plus
2L 23513712 2L 20856418..20856632 300..514 1075 100 Plus
2L 23513712 2L 20852748..20852818 16..86 355 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:45:55 has no hits.

BO06719.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:06 Download gff for BO06719.complete
Subject Subject Range Query Range Percent Splice Strand
CG9335-RA 1..501 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:16 Download gff for BO06719.complete
Subject Subject Range Query Range Percent Splice Strand
CG9335-RA 165..671 10..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:03 Download gff for BO06719.complete
Subject Subject Range Query Range Percent Splice Strand
twit-RA 172..669 17..516 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:06 Download gff for BO06719.complete
Subject Subject Range Query Range Percent Splice Strand
CG9335-RA 165..671 10..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:13 Download gff for BO06719.complete
Subject Subject Range Query Range Percent Splice Strand
twit-RA 172..669 17..516 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:13 Download gff for BO06719.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20856418..20856632 300..516 99   Plus
2L 20852749..20852818 17..86 100 -> Plus
2L 20856144..20856356 87..299 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:03 Download gff for BO06719.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20856418..20856632 300..516 99   Plus
arm_2L 20852749..20852818 17..86 100 -> Plus
arm_2L 20856144..20856356 87..299 100 -> Plus

BO06719.pep Sequence

Translation from 16 to 532

> BO06719.pep
MSAVPMKAFLAGLFLLANAWHITAINEQHQKHHLQCWHCSSDTIGAEDFC
DVTFQEDNIPTDLIKERNINLLRSCNGTINSDHERAVCRKTVEENNGKLI
TKRFCYYTNKSDPVELCNITSPEKNVRRIFCEDCLTDRCNGALAGASILE
MLLLLPIAGLIQQFAIASFLDH

BO06719.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
twit-PA 166 CG9335-PA 1..166 1..166 891 100 Plus
CG31676-PB 159 CG31676-PB 27..146 34..157 184 33.1 Plus
CG31676-PA 159 CG31676-PA 27..146 34..157 184 33.1 Plus