Clone Sequence Records
BO06719.5prime Sequence
530 bp (529 high quality bases) assembled on 2005-12-03
> BO06719.5prime
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCGCAAGCTTTCTAGACC
BO06719.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9335-PA | 501 | CG9335-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 1150 | CG9335-RA | 171..669 | 16..514 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20856140..20856356 | 83..299 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 20856418..20856632 | 300..514 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 20852748..20852818 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:48:31 has no hits.
BO06719.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:39 Download gff for
BO06719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:12 Download gff for
BO06719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:54 Download gff for
BO06719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:30 Download gff for
BO06719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 10..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:30 Download gff for
BO06719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20852745..20852818 | 10..86 | 96 | -> | Plus |
2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
2L | 20856418..20856637 | 300..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:54 Download gff for
BO06719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20852745..20852818 | 10..86 | 96 | -> | Plus |
arm_2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
arm_2L | 20856418..20856637 | 300..520 | 99 | | Plus |
BO06719.3prime Sequence
530 bp (529 high quality bases) assembled on 2005-12-03
> BO06719.3prime
ATGGTCTAGAAAGCTTGCGATGGCAAACTGTTGGATGAGGCCCGCGATGG
GCAGGAGCAGCAGCATCTCCAAAATGGATGCACCTGCTAAGGCTCCGTTG
CAGCGATCGGTGAGGCAGTCCTCGCAGAATATCCGCCGCACGTTCTTCTC
CGGACTGGTGATGTTGCACAGCTCCACGGGATCTGATTTGTTGGTGTAGT
AGCAGAATCGCTTGGTGATCAGCTTGCCATTATTTTCCTCCACGGTCTTG
CGGCAAACGGCCCTCTCGTGATCGGAGTTAATGGTGCCGTTGCAGCTCCT
TAGCAGATTTATATTCCGCTCCTTGATCAGGTCAGTGGGAATGTTGTCCT
CCTGGAAGGTCACGTCGCAGAAGTCCTCCGCCCCAATTGTGTCCGAGCTA
CAGTGCCAGCACTGCAGGTGATGCTTCTGGTGCTGCTCATTTATGGCTGT
GATGTGCCAGGCATTGGCCAGCAAGAAGAGACCAGCCAGAAAGGCTTTCA
TCGGCACCGCTGACATGTCGACTGATAACT
BO06719.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9335-PA | 501 | CG9335-RA | 1..498 | 516..19 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 1150 | CG9335-RA | 171..669 | 517..19 | 2495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20856140..20856356 | 450..234 | 1085 | 100 | Minus |
2L | 23513712 | 2L | 20856418..20856632 | 233..19 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 20852748..20852818 | 517..447 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:08:32 has no hits.
BO06719.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:38 Download gff for
BO06719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 15..516 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:11 Download gff for
BO06719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-PA | 1..501 | 15..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:48 Download gff for
BO06719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 13..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:23 Download gff for
BO06719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 168..674 | 13..523 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:23 Download gff for
BO06719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20852745..20852818 | 447..523 | 96 | -> | Minus |
2L | 20856144..20856356 | 234..446 | 100 | -> | Minus |
2L | 20856418..20856637 | 13..233 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:48 Download gff for
BO06719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20852745..20852818 | 447..523 | 96 | -> | Minus |
arm_2L | 20856144..20856356 | 234..446 | 100 | -> | Minus |
arm_2L | 20856418..20856637 | 13..233 | 99 | | Minus |
BO06719.complete Sequence
532 bp (532 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630506
> BO06719.complete
GAAGTTATCAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTG
GTCTCTTCTTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAG
CACCAGAAGCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGG
GGCGGAGGACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTG
ACCTGATCAAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACC
ATTAACTCCGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAA
TAATGGCAAGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAG
ATCCCGTGGAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGG
ATATTCTGCGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGG
TGCATCCATTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCC
AACAGTTTGCCATCGCAAGCTTTCTAGACCAT
BO06719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 501 | CG9335-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-RA | 1150 | CG9335-RA | 171..669 | 16..514 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20856140..20856356 | 83..299 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 20856418..20856632 | 300..514 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 20852748..20852818 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:55 has no hits.
BO06719.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:06 Download gff for
BO06719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-RA | 1..501 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:16 Download gff for
BO06719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-RA | 165..671 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:03 Download gff for
BO06719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 172..669 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:06 Download gff for
BO06719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9335-RA | 165..671 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:13 Download gff for
BO06719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twit-RA | 172..669 | 17..516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:13 Download gff for
BO06719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20856418..20856632 | 300..516 | 99 | | Plus |
2L | 20852749..20852818 | 17..86 | 100 | -> | Plus |
2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:03 Download gff for
BO06719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20856418..20856632 | 300..516 | 99 | | Plus |
arm_2L | 20852749..20852818 | 17..86 | 100 | -> | Plus |
arm_2L | 20856144..20856356 | 87..299 | 100 | -> | Plus |
BO06719.pep Sequence
Translation from 16 to 532
> BO06719.pep
MSAVPMKAFLAGLFLLANAWHITAINEQHQKHHLQCWHCSSDTIGAEDFC
DVTFQEDNIPTDLIKERNINLLRSCNGTINSDHERAVCRKTVEENNGKLI
TKRFCYYTNKSDPVELCNITSPEKNVRRIFCEDCLTDRCNGALAGASILE
MLLLLPIAGLIQQFAIASFLDH
BO06719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twit-PA | 166 | CG9335-PA | 1..166 | 1..166 | 891 | 100 | Plus |
CG31676-PB | 159 | CG31676-PB | 27..146 | 34..157 | 184 | 33.1 | Plus |
CG31676-PA | 159 | CG31676-PA | 27..146 | 34..157 | 184 | 33.1 | Plus |