Clone Sequence Records
BO06724.3prime Sequence
872 bp (870 high quality bases) assembled on 2005-12-03
> BO06724.3prime
ATGGTCTAGAAAGCTTGCGTTAATGCGCGGCTTGAGCTCGTCGTAGCACG
AGCGCAGAAAGATTTGGGGCTTCTTGGCCGGGTTGAAGTACTCGTGGCCC
TTCGACCAGTCGTAGCCGACGGCGTACGCAAATATCTGGCCGTTGGCGTT
AAATCCGCATTTGGTAATGGACTGATCCATGGTCTCGCTGGACTTGAGCT
TGGTCCGGGCATCCTTGTCCCAGAAACTGAAGGTGCCATCTGAGCCAACG
GTCACCAGGGTGCCGTGCACAGGGTGGAATGCGATGTCATTTACTGCATA
AATATCCTGGTAGCCTGAGGTGCCCGTAGTACGGTGGCACTTGAAGGTGA
AGTTATCTTTTGGATTCCCCGGATTCACATACTGAATGGCCACACGGCCC
TCAATGCTGCCCAGCGCACAGCCTGTGGGCTCTTTTTTCTTGTCCCGGAA
AATGGAAATGGCACGGTGCTGGTACTTCAGCGGACTCTCCTGCCGCTTGT
ACTCGGTTGGGCTATTCTGCAGCGAGTATATGATGAGTCCTCTGTTGGCC
GTGCCCACCACGGCCATCGGATACTCCACATCGGCGCAGTAGCACCGCTC
GGGTAGATTGATGGTCATCATGGGATTGGGCGAACGGGTGTCCCAGAACT
TTAGGGTCTTGTCCCAGGAGCCGGTCATGAGGCAGGTGTACGTGGGTCCC
TTGACCATGTGGCACGTCTTAACGGGACCGTCGTGGGCCGCCACTTGCAT
CACTTGATCGGAGGCGAGGTCCCAGAGCTTCACCTGCTTGTCGCANGAGG
CGACGAACACTTTGCTGCCGTCGTCCGACCAGCAAACGTCCAGCACCGGT
CCGCCCATGGTCTTCATCGACT
BO06724.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9862-PA | 1041 | Rae1-RA | 185..1038 | 872..19 | 4251 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-RA | 1189 | CG9862-RA | 260..1113 | 872..19 | 4259 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21658846..21659477 | 19..650 | 3160 | 100 | Plus |
| 2R | 25286936 | 2R | 21659525..21659748 | 649..872 | 1109 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:02:29 has no hits.
BO06724.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:46 Download gff for
BO06724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-PA | 185..1041 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:22 Download gff for
BO06724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9862-PA | 185..1041 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:27 Download gff for
BO06724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 260..1113 | 19..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:48 Download gff for
BO06724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 260..1113 | 19..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:48 Download gff for
BO06724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21658846..21659475 | 19..648 | 100 | <- | Plus |
| 2R | 21659525..21659748 | 649..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:27 Download gff for
BO06724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17546351..17546980 | 19..648 | 100 | <- | Plus |
| arm_2R | 17547030..17547253 | 649..872 | 99 | | Plus |
BO06724.5prime Sequence
909 bp (755 high quality bases) assembled on 2005-12-03
> BO06724.5prime
GAAGTTATCAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGA
ACGACTTCGAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAG
TTCAGCCCCAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGA
CAGCACGGTCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCA
AGTCGATGAAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGAC
GACGGCAGCAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTG
GGACCTCGCCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCG
TTAAGACGTGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACC
GGCTCCTGGGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCC
CATGATGACCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGT
ATCCGATGGCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCG
CTGCAGAATAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTA
CCAGCACCGTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAG
GCTGTGCGCTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAAT
CCGGGGAATCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGG
CACCTCAGGCTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACC
CTGTGCACGGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTC
TGGGACAAGGATGCCGGGACCAGCTCAAGTCCAGCGAGACCATGGATCAG
TCCATTACC
BO06724.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9862-PA | 1041 | Rae1-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
| CG9862-PA | 1041 | Rae1-RA | 857..894 | 872..909 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-RA | 1189 | CG9862-RA | 76..969 | 17..909 | 4430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21658990..21659477 | 909..423 | 2375 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21659525..21659932 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:20:56 has no hits.
BO06724.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:47 Download gff for
BO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:24 Download gff for
BO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9862-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:52 Download gff for
BO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..969 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:57 Download gff for
BO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..969 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:57 Download gff for
BO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21658990..21659475 | 425..909 | 99 | <- | Minus |
| 2R | 21659525..21659939 | 9..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:52 Download gff for
BO06724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17546495..17546980 | 425..909 | 99 | <- | Minus |
| arm_2R | 17547030..17547444 | 9..424 | 99 | | Minus |
BO06724.complete Sequence
1072 bp (1072 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630507
> BO06724.complete
GAAGTTATCAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGA
ACGACTTCGAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAG
TTCAGCCCCAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGA
CAGCACGGTCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCA
AGTCGATGAAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGAC
GACGGCAGCAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTG
GGACCTCGCCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCG
TTAAGACGTGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACC
GGCTCCTGGGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCC
CATGATGACCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGT
ATCCGATGGCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCG
CTGCAGAATAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTA
CCAGCACCGTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAG
GCTGTGCGCTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAAT
CCGGGGAATCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGG
CACCTCAGGCTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACC
CTGTGCACGGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTC
TGGGACAAGGATGCCCGGACCAAGCTCAAGTCCAGCGAGACCATGGATCA
GTCCATTACCAAATGCGGATTTAACGCCAACGGCCAGATATTTGCGTACG
CCGTCGGCTACGACTGGTCGAAGGGCCACGAGTACTTCAACCCGGCCAAG
AAGCCCCAAATCTTTCTGCGCTCGTGCTACGACGAGCTCAAGCCGCGCAT
TAACGCAAGCTTTCTAGACCAT
BO06724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-RA | 1041 | CG9862-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-RA | 1189 | CG9862-RA | 76..1113 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21658846..21659477 | 1054..423 | 3160 | 100 | Minus |
| 2R | 25286936 | 2R | 21659525..21659932 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:14:55 has no hits.
BO06724.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:31 Download gff for
BO06724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 1..1041 | 17..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:51 Download gff for
BO06724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 65..1109 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:46 Download gff for
BO06724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 82..1113 | 23..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:31 Download gff for
BO06724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 65..1109 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:48 Download gff for
BO06724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 82..1113 | 23..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:48 Download gff for
BO06724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21658843..21659475 | 425..1056 | 99 | <- | Minus |
| 2R | 21659525..21659926 | 23..424 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:46 Download gff for
BO06724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17546348..17546980 | 425..1056 | 99 | <- | Minus |
| arm_2R | 17547030..17547431 | 23..424 | 100 | | Minus |
BO06724.pep Sequence
Translation from 16 to 1072
> BO06724.pep
MFGATQSTNRMNDFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRC
WEVEQNGATVPKSMKTMGGPVLDVCWSDDGSKVFVASCDKQVKLWDLASD
QVMQVAAHDGPVKTCHMVKGPTYTCLMTGSWDKTLKFWDTRSPNPMMTIN
LPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYKRQESPLKYQHRAI
SIFRDKKKEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKCHRTTGTSGYQ
DIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKC
GFNANGQIFAYAVGYDWSKGHEYFNPAKKPQIFLRSCYDELKPRINASFL
DH
BO06724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-PA | 346 | CG9862-PA | 1..346 | 1..346 | 1884 | 100 | Plus |
| CG12782-PA | 336 | CG12782-PA | 4..328 | 2..335 | 675 | 41.6 | Plus |
| Bub3-PB | 326 | CG7581-PB | 2..297 | 10..315 | 401 | 32.4 | Plus |
| Bub3-PA | 326 | CG7581-PA | 2..297 | 10..315 | 401 | 32.4 | Plus |
