Clone BO06728 Report

Search the DGRC for BO06728

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptSpase25-RA
Protein status:BO06728.pep: validated full length
Sequenced Size:631

Clone Sequence Records

BO06728.3prime Sequence

629 bp (628 high quality bases) assembled on 2005-12-03

> BO06728.3prime
ATGGTCTAGAAAGCTTGCATTAGAAGAAAGGCTGCTAGCGTTCTTCTTGT
CGGCAGCTAAGGCGTTGAACAGACGGTTGACCTCGTTGGCCACCAGGTTG
TCCAGGACGATGCCATTCTGATCGATGAAGGCGGCGCACGACTTGTTGCT
GCTCTGCTCGCGCCGCTTGCCATTTTTCGTGTCGCGAACACTGAGGGTCA
GCAGGTACTTGTCGTCGTACTTGCGCATATCGGAGCTGGCCTCCCACAGG
CGCTCCCGCTCCTTGTCCTTCTGCAGGGCCACCGCAAAGGTGCCCTTCTC
GCGGAAACTGGAGTGCAGGGTCAGAATGCCGAGGAGTGCAAAGTAGGCCA
AAACACTGAAGAGGAGCACTGGACGGGATTCCGGGAAGGGGTGGGTGAAG
TCCCAAGCATGGGCCATTATAGCCACGGAAACGGCGAGGGCGCAGAGGGC
CAAACGGGTGTTGACCAGGCCGAATTGCTCCTTCAGCTGGGGACGATCGC
CAAGGAGGCAGGTTTTCACTGCATCATCGAGGGCGTGCTTCACTGCGGAT
CCATCCCACTTGTTGACCTTCACCAGCTCCTCGCCTTGCTGTGACTTTTC
ATCCTTCTTGCCCATGTCGACTGATAACT

BO06728.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1751-PA 600 CG1751-RA 1..597 615..19 2985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 1188 CG1751-RC 144..740 615..19 2985 100 Minus
Spase25-RB 860 CG1751-RB 144..740 615..19 2985 100 Minus
Spase25-RA 821 CG1751-RA 144..740 615..19 2985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11485559..11486118 578..19 2800 100 Minus
X 23542271 X 11485393..11485431 615..577 195 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:02:37 has no hits.

BO06728.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:50 Download gff for BO06728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 15..615 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:28 Download gff for BO06728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 15..615 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:29 Download gff for BO06728.3prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..743 15..623 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:20 Download gff for BO06728.3prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..743 15..623 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:20 Download gff for BO06728.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11485383..11485431 577..623 91 -> Minus
X 11485561..11486121 15..576 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:29 Download gff for BO06728.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11379416..11379464 577..623 91 -> Minus
arm_X 11379594..11380154 15..576 99   Minus

BO06728.5prime Sequence

629 bp (628 high quality bases) assembled on 2005-12-03

> BO06728.5prime
GAAGTTATCAGTCGACATGGGCAAGAAGGATGAAAAGTCACAGCAAGGCG
AGGAGCTGGTGAAGGTCAACAAGTGGGATGGATCCGCAGTGAAGCACGCC
CTCGATGATGCAGTGAAAACCTGCCTCCTTGGCGATCGTCCCCAGCTGAA
GGAGCAATTCGGCCTGGTCAACACCCGTTTGGCCCTCTGCGCCCTCGCCG
TTTCCGTGGCTATAATGGCCCATGCTTGGGACTTCACCCACCCCTTCCCG
GAATCCCGTCCAGTGCTCCTCTTCAGTGTTTTGGCCTACTTTGCACTCCT
CGGCATTCTGACCCTGCACTCCAGTTTCCGCGAGAAGGGCACCTTTGCGG
TGGCCCTGCAGAAGGACAAGGAGCGGGAGCGCCTGTGGGAGGCCAGCTCC
GATATGCGCAAGTACGACGACAAGTACCTGCTGACCCTCAGTGTTCGCGA
CACGAAAAATGGCAAGCGGCGCGAGCAGAGCAGCAACAAGTCGTGCGCCG
CCTTCATCGATCAGAATGGCATCGTCCTGGACAACCTGGTGGCCAACGAG
GTCAACCGTCTGTTCAACGCCTTAGCTGCCGACAAGAAGAACGCTAGCAG
CCTTTCTTCTAATGCAAGCTTTCTAGACC

BO06728.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1751-PA 600 CG1751-RA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 1188 CG1751-RC 144..740 17..613 2985 100 Plus
Spase25-RB 860 CG1751-RB 144..740 17..613 2985 100 Plus
Spase25-RA 821 CG1751-RA 144..740 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11485559..11486118 54..613 2800 100 Plus
X 23542271 X 11485393..11485431 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:18:37 has no hits.

BO06728.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:51 Download gff for BO06728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 17..617 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:29 Download gff for BO06728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1751-PA 1..600 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:33 Download gff for BO06728.5prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..743 9..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:31 Download gff for BO06728.5prime
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 134..743 9..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:31 Download gff for BO06728.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11485383..11485431 9..55 91 -> Plus
X 11485561..11486121 56..617 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:33 Download gff for BO06728.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11379416..11379464 9..55 91 -> Plus
arm_X 11379594..11380154 56..617 99   Plus

BO06728.complete Sequence

631 bp (631 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630508

> BO06728.complete
GAAGTTATCAGTCGACATGGGCAAGAAGGATGAAAAGTCACAGCAAGGCG
AGGAGCTGGTGAAGGTCAACAAGTGGGATGGATCCGCAGTGAAGCACGCC
CTCGATGATGCAGTGAAAACCTGCCTCCTTGGCGATCGTCCCCAGCTGAA
GGAGCAATTCGGCCTGGTCAACACCCGTTTGGCCCTCTGCGCCCTCGCCG
TTTCCGTGGCTATAATGGCCCATGCTTGGGACTTCACCCACCCCTTCCCG
GAATCCCGTCCAGTGCTCCTCTTCAGTGTTTTGGCCTACTTTGCACTCCT
CGGCATTCTGACCCTGCACTCCAGTTTCCGCGAGAAGGGCACCTTTGCGG
TGGCCCTGCAGAAGGACAAGGAGCGGGAGCGCCTGTGGGAGGCCAGCTCC
GATATGCGCAAGTACGACGACAAGTACCTGCTGACCCTCAGTGTTCGCGA
CACGAAAAATGGCAAGCGGCGCGAGCAGAGCAGCAACAAGTCGTGCGCCG
CCTTCATCGATCAGAATGGCATCGTCCTGGACAACCTGGTGGCCAACGAG
GTCAACCGTCTGTTCAACGCCTTAGCTGCCGACAAGAAGAACGCTAGCAG
CCTTTCTTCTAATGCAAGCTTTCTAGACCAT

BO06728.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 600 CG1751-PC 1..597 17..613 2985 100 Plus
Spase25-RB 600 CG1751-PB 1..597 17..613 2985 100 Plus
Spase25-RA 600 CG1751-PA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-RC 1188 CG1751-RC 144..740 17..613 2985 100 Plus
Spase25-RB 860 CG1751-RB 144..740 17..613 2985 100 Plus
Spase25-RA 821 CG1751-RA 144..740 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11485559..11486118 54..613 2800 100 Plus
X 23542271 X 11485393..11485431 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:49:19 has no hits.

BO06728.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:14 Download gff for BO06728.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 1..600 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:34 Download gff for BO06728.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 132..741 9..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:46 Download gff for BO06728.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 144..740 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:14 Download gff for BO06728.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 132..741 9..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:09 Download gff for BO06728.complete
Subject Subject Range Query Range Percent Splice Strand
Spase25-RA 144..740 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:09 Download gff for BO06728.complete
Subject Subject Range Query Range Percent Splice Strand
X 11485393..11485431 17..55 100 -> Plus
X 11485561..11486118 56..615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:46 Download gff for BO06728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11379426..11379464 17..55 100 -> Plus
arm_X 11379594..11380151 56..615 99   Plus

BO06728.pep Sequence

Translation from 16 to 631

> BO06728.pep
MGKKDEKSQQGEELVKVNKWDGSAVKHALDDAVKTCLLGDRPQLKEQFGL
VNTRLALCALAVSVAIMAHAWDFTHPFPESRPVLLFSVLAYFALLGILTL
HSSFREKGTFAVALQKDKERERLWEASSDMRKYDDKYLLTLSVRDTKNGK
RREQSSNKSCAAFIDQNGIVLDNLVANEVNRLFNALAADKKNASSLSSNA
SFLDH

BO06728.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Spase25-PC 199 CG1751-PC 1..199 1..199 1012 100 Plus
Spase25-PB 199 CG1751-PB 1..199 1..199 1012 100 Plus
Spase25-PA 199 CG1751-PA 1..199 1..199 1012 100 Plus