Clone Sequence Records
BO06730.3prime Sequence
937 bp (821 high quality bases) assembled on 2005-12-03
> BO06730.3prime
ATGGTCTAGAAAGCTTGCCTTCCAGTTTGAACTGGATCCTGCCCAGCCGC
CTGAGGCCGGCGCTGAGTAGCTGTATCCGTCGCCACCGCCGCCGGAAGAC
CCGCCGTAGGAGCCACCGCTGCCTGAAGCAGCGGCTGCAGCCACCACTTG
TGTATCATAGCTGGATCCGCCGCCACTGCTATAGCCACCGCCATGTCCAC
TGCTGTATCCTCCAGAGCTGTAGGACGAGCCGCTGCTGTAGGAGGAGGCT
CCGCTGTAAGAGGATCCACCAGAATATCCACCATCGTAGCCCCCGGAGGA
GCCACCACTGTATCCACCGGAGGATCCGCCGCCGTATCCGCCGGAAGAGC
CATGTGAATCTCCAGCCGCAGCAGCAGCCACAATCACCTGGGTGTCATGA
CCTCCTCCGCTGTGACCGCCACCGCTGTAGCCGCCGTATCCTCCGCTGCC
ACCATGATCAGAGGAGTCTGAGCTGGCGGCGATGGCTGCAATGTTGGCGA
TGGCATGGCCACCATAACCTCCGCCGTGTCCGCCGCTGCCTCCATGTCCG
CCATGTCCGTGATCGGAGGACGAGCCAGCAGCAGCAGCGATGGCAGCAAT
CTTGGCATCATCATGACCGGAACTATATCCGCCGGAGCTGTATCCGTGGC
CACCTCCACCGCCTCCGCCACCCCCGGAACTGTATCCGTGGTTCTCGGTG
ATAACAGCATAGGTGTTCACATGACCACCGCCTCCTCCACCGCCGCTGTA
TCCGCCATCGTGGGAGTGAATCTCATAGCCTCCACCTCCATGGCCGCCAA
AATCACCGCCTCCGTGGCCGCCAAAATCACCGCCTCCGTGGCCGCCGTGA
TCCCCCACGCTCTCTGGCANGTGAATACGGATGTGGACATGCTCTCGTCC
GAAGGTGGGCTTTCCCCATACCGCTGGGCTAGCCAGC
BO06730.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-PA | 1029 | CG9083-RA | 108..1026 | 937..19 | 4526 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 1311..2229 | 19..937 | 4554 | 99.7 | Plus |
| CG9083-RB | 1165 | CG9083-RB | 102..1020 | 937..19 | 4554 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24898442..24899360 | 937..19 | 4554 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:48:33 has no hits.
BO06730.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:54 Download gff for
BO06730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 108..1029 | 18..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:34 Download gff for
BO06730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 108..1029 | 18..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:55 Download gff for
BO06730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 1311..2229 | 19..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:32 Download gff for
BO06730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 102..1020 | 19..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:32 Download gff for
BO06730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24898442..24899360 | 19..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:55 Download gff for
BO06730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20785965..20786883 | 19..937 | 99 | | Minus |
BO06730.5prime Sequence
955 bp (860 high quality bases) assembled on 2005-12-03
> BO06730.5prime
GAAGTTATCAGTCGACATGTTTGCCGAATCATTTCCAGTCGGTCCAGAGG
CGAGCAATCATTCGAGAGTCCTTCGTAACGAATCCAGAGAAATGGCAGCC
CGTTTCATAATCAGTGCGCTTCTGCTGGCTAGCCCAGCGGTATGGGGAAA
GCCCACCTTCGGACGAGAGCATGTCCACATCCGTATTCACCTGCCAGAGA
GCGGTGGGGATCACGGCGGCCACGGAGGCGGTGATTTTGGCGGCCACGGA
GGCGGTGATTTTGGCGGCCATGGAGGTGGAGGCTATGAGATTCACTCCCA
CGATGGCGGATACAGCGGCGGTGGAGGAGGCGGTGGTCATGTGAACACCT
ATGCTGTTATCACCGAGAACCACGGATACAGTTCCGGGGGTGGCGGAGGC
GGTGGAGGTGGCCACGGATACAGCTCCGGCGGATATAGTTCCGGTCATGA
TGATGCCAAGATTGCTGCCATCGCTGCTGCTGCTGGCTCGTCCTCCGATC
ACGGACATGGCGGACATGGAGGCAGCGGCGGACACGGCGGAGGTTATGGT
GGCCATGCCATCGCCAACATTGCAGCCATCGCCGCCAGCTCAGACTCCTC
TGATCATGGTGGCAGCGGAGGATACGGCGGCTACAGCGGTGGCGGTCACA
GCGGAGGAGGTCATGACACCCAGGTGATTGTGGCTGCTGCTGCGGCTGGA
GATTCACATGGCTCTTCCGGCGGATACGGCGGCGGATCCTCCGGTGGATA
CAGTGGTGGCTCCTCCGGGGGCTACGATGGTGGATATTCTGGTGGATCCT
CTTACAGCGGAGCCTCCTCCTACAGCAGCGGCTCGTCCTACAGCTCTGGA
GGATACAGCAGTGGACATGGCGGTGGCTATAGCAGTGGCGGCGGATCCAG
CTATGATACACAAGTGGTGGCTGCAGCCGCTGCTTCAGGCAGCGGTGGCT
CCTAC
BO06730.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-PA | 1029 | CG9083-RA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-RB | 1165 | CG9083-RB | 1..933 | 23..955 | 4665 | 100 | Plus |
| Tpc2-RB | 2769 | CG2857-RB | 1398..2243 | 955..110 | 4230 | 100 | Minus |
| Tpc2-RB | 2769 | CG2857-RB | 2312..2405 | 109..16 | 470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24898428..24899273 | 110..955 | 4230 | 100 | Plus |
| 2R | 25286936 | 2R | 24898266..24898359 | 16..109 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:18:51 has no hits.
BO06730.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:57:55 Download gff for
BO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:35 Download gff for
BO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:36 Download gff for
BO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..933 | 23..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:33 Download gff for
BO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..933 | 23..955 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:33 Download gff for
BO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24898266..24898359 | 16..109 | 100 | -> | Plus |
| 2R | 24898428..24899273 | 110..955 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:36 Download gff for
BO06730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20785789..20785882 | 16..109 | 100 | -> | Plus |
| arm_2R | 20785951..20786796 | 110..955 | 100 | | Plus |
BO06730.complete Sequence
1060 bp (1060 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630509
> BO06730.complete
GAAGTTATCAGTCGACATGTTTGCCGAATCATTTCCAGTCGGTCCAGAGG
CGAGCAATCATTCGAGAGTCCTTCGTAACGAATCCAGAGAAATGGCAGCC
CGTTTCATAATCAGTGCGCTTCTGCTGGCTAGCCCAGCGGTATGGGGAAA
GCCCACCTTCGGACGAGAGCATGTCCACATCCGTATTCACCTGCCAGAGA
GCGGTGGGGATCACGGCGGCCACGGAGGCGGTGATTTTGGCGGCCACGGA
GGCGGTGATTTTGGCGGCCATGGAGGTGGAGGCTATGAGATTCACTCCCA
CGATGGCGGATACAGCGGCGGTGGAGGAGGCGGTGGTCATGTGAACACCT
ATGCTGTTATCACCGAGAACCACGGATACAGTTCCGGGGGTGGCGGAGGC
GGTGGAGGTGGCCACGGATACAGCTCCGGCGGATATAGTTCCGGTCATGA
TGATGCCAAGATTGCTGCCATCGCTGCTGCTGCTGGCTCGTCCTCCGATC
ACGGACATGGCGGACATGGAGGCAGCGGCGGACACGGCGGAGGTTATGGT
GGCCATGCCATCGCCAACATTGCAGCCATCGCCGCCAGCTCAGACTCCTC
TGATCATGGTGGCAGCGGAGGATACGGCGGCTACAGCGGTGGCGGTCACA
GCGGAGGAGGTCATGACACCCAGGTGATTGTGGCTGCTGCTGCGGCTGGA
GATTCACATGGCTCTTCCGGCGGATACGGCGGCGGATCCTCCGGTGGATA
CAGTGGTGGCTCCTCCGGGGGCTACGATGGTGGATATTCTGGTGGATCCT
CTTACAGCGGAGCCTCCTCCTACAGCAGCGGCTCGTCCTACAGCTCTGGA
GGATACAGCAGTGGACATGGCGGTGGCTATAGCAGTGGCGGCGGATCCAG
CTATGATACACAAGTGGTGGCTGCAGCCGCTGCTTCAGGCAGCGGTGGCT
CCTACGGCGGGTCTTCCGGCGGCGGTGGCGACGGATACAGCTACTCAGCG
CCGGCCTCAGGCGGCTGGGCAGGATCCAGTTCAAACTGGAAGGCAAGCTT
TCTAGACCAT
BO06730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-RB | 954 | CG9083-PB | 1..951 | 92..1042 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-RB | 1165 | CG9083-RB | 1..1020 | 23..1042 | 5100 | 100 | Plus |
| Tpc2-RB | 2769 | CG2857-RB | 1311..2243 | 1042..110 | 4665 | 100 | Minus |
| Tpc2-RB | 2769 | CG2857-RB | 2312..2405 | 109..16 | 470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24898428..24899360 | 110..1042 | 4665 | 100 | Plus |
| 2R | 25286936 | 2R | 24898266..24898359 | 16..109 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:35:46 has no hits.
BO06730.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:32 Download gff for
BO06730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..954 | 92..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:52 Download gff for
BO06730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1015 | 28..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:18 Download gff for
BO06730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1020 | 23..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:32 Download gff for
BO06730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1015 | 28..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:11 Download gff for
BO06730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1020 | 23..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:11 Download gff for
BO06730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24898273..24898359 | 23..109 | 100 | -> | Plus |
| 2R | 24898428..24899360 | 110..1044 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:18 Download gff for
BO06730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20785796..20785882 | 23..109 | 100 | -> | Plus |
| arm_2R | 20785951..20786883 | 110..1044 | 99 | | Plus |
BO06730.pep Sequence
Translation from 16 to 1060
> BO06730.pep
MFAESFPVGPEASNHSRVLRNESREMAARFIISALLLASPAVWGKPTFGR
EHVHIRIHLPESGGDHGGHGGGDFGGHGGGDFGGHGGGGYEIHSHDGGYS
GGGGGGGHVNTYAVITENHGYSSGGGGGGGGGHGYSSGGYSSGHDDAKIA
AIAAAAGSSSDHGHGGHGGSGGHGGGYGGHAIANIAAIAASSDSSDHGGS
GGYGGYSGGGHSGGGHDTQVIVAAAAAGDSHGSSGGYGGGSSGGYSGGSS
GGYDGGYSGGSSYSGASSYSSGSSYSSGGYSSGHGGGYSSGGGSSYDTQV
VAAAAASGSGGSYGGSSGGGGDGYSYSAPASGGWAGSSSNWKASFLDH
BO06730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-PB | 317 | CG9083-PB | 1..317 | 26..342 | 1739 | 100 | Plus |
| CG17108-PA | 342 | CG17108-PA | 46..338 | 63..336 | 403 | 37.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 272..536 | 62..336 | 388 | 38.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 230..493 | 57..336 | 386 | 37.3 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 272..547 | 62..336 | 378 | 36.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 235..471 | 63..336 | 377 | 36.8 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 314..590 | 63..340 | 374 | 37.3 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 230..504 | 57..336 | 371 | 35.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 314..587 | 63..341 | 368 | 35.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 345..601 | 63..340 | 368 | 37.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 15..268 | 62..342 | 354 | 37.1 | Plus |
| CG17108-PA | 342 | CG17108-PA | 101..340 | 62..288 | 353 | 42.1 | Plus |
| CG12523-PB | 250 | CG12523-PB | 17..250 | 80..334 | 352 | 41.1 | Plus |
| CG17108-PA | 342 | CG17108-PA | 17..220 | 83..345 | 321 | 37 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 46..340 | 63..336 | 293 | 32.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 46..340 | 63..336 | 293 | 32.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 66..408 | 63..336 | 290 | 30.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 66..408 | 63..336 | 290 | 30.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 6..202 | 109..344 | 267 | 35.5 | Plus |
| CG17108-PA | 342 | CG17108-PA | 172..342 | 63..239 | 250 | 39.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 371..600 | 60..270 | 237 | 36.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 410..611 | 63..270 | 234 | 36.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 239..342 | 60..205 | 207 | 38.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 28..285 | 60..341 | 204 | 27.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 28..285 | 60..341 | 204 | 27.4 | Plus |
