Clone Sequence Records
BO06736.3prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-03
> BO06736.3prime
ATGGTCTAGAAAGCTTGCAAATCTGTAACGCCTGATGGCACGATACTGGT
AGCCATCGCTGCCCAGGACGGCACTCTCGCCTCCAGCTGGACCCTCCACG
ATGACCTCCTCGCCGCCGATCGGAGGCAGATACTCGGGAGCGGCCTCCCT
CAGCTCGGCGGGCATCTCGGCCGGCTGCTGGTAGTGGTAGCCATCCTGGA
GCAGTTGCCCAGAAACGGTGGGCACATCCACCACACGGACATCGGCTGGC
TCCTCGGGTGCAGCCGCCTCGGTGGTTTCCTCAGCGGCTGGTGCAGCTTC
CGTGGGCGGAAGGTACTCCCGGTTCACCTTGGGCTCGGCGGCGGACACCA
CCTCCTCGGTGTCATCGGCAGGTGGAGCTGCAGCTGCCGGAGCCTCGGGT
GCAGCCTGCGCCTCCTGAGCAGGTGGCAAGTAGGCGGTGCTGGGTGGCAG
ATACTGCCTGGCTGGCTGCAAATGGGACACATCACGACGGTTGCGATGGC
GCAGCTTAAGGCGGCGCACCGTGCGGTACTCGTAGCCCTCATCGCCCAGG
ACAGTGGCCTCCGGATCGGCTTCCAGGGCAGCAGGATCGGCATGAGCCTC
AGCCTCCACAGGCTCAGCGTTCAGGAGGACAGCCTCGGTGACCGAAGGAG
GCAGATATTCCACTGCAGCGGGATCCACCAGTTCCGAGACATCGCGGCGC
AGCCGAGATTCCAATTGAGGAGCACCTAGGGCCACACTGGCCACAGCGGA
GAGGGTAAGGACACCACCAAGCGAGAAGATTTTCATGTCGACTGATAACT
BO06736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4229-PA | 771 | CG4229-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4229-RA | 949 | CG4229-RA | 74..841 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16557085..16557850 | 784..19 | 3830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:18:15 has no hits.
BO06736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:00 Download gff for
BO06736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:41 Download gff for
BO06736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:11 Download gff for
BO06736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 74..850 | 8..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:09 Download gff for
BO06736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 74..850 | 8..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:09 Download gff for
BO06736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16557081..16557859 | 8..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:11 Download gff for
BO06736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16550181..16550959 | 8..791 | 99 | | Minus |
BO06736.5prime Sequence
800 bp (767 high quality bases) assembled on 2005-12-03
> BO06736.5prime
GAAGTTATCAGTCGACATGAAAATCTTCTCGCTTGGTGGTGTCCTTACCC
TCTCCGCTGTGGCCAGTGTGGCCCTAGGTGCTCCTCAATTGGAATCTCGG
CTGCGCCGCGATGTCTCGGAACTGGTGGATCCCGCTGCAGTGGAATATCT
GCCTCCTTCGGTCACCGAGGCTGTCCTCCTGAACGCTGAGCCTGTGGAGG
CTGAGGCTCATGCCGATCCTGCTGCCCTGGAAGCCGATCCGGAGGCCACT
GTCCTGGGCGATGAGGGCTACGAGTACCGCACGGTGCGCCGCCTTAAGCT
GCGCCATCGCAACCGTCGTGATGTGTCCCATTTGCAGCCAGCCAGGCAGT
ATCTGCCACCCAGCACCGCCTACTTGCCACCTGCTCAGGAGGCGCAGGCT
GCACCCGAGGCTCCGGCAGCTGCAGCTCCACCTGCCGATGACACCGAGGA
GGTGGTGTCCGCCGCCGAGCCCAAGGTGAACCGGGAGTACCTTCCGCCCA
CGGAAGCTGCACCAGCCGCTGAGGAAACCACCGAGGCGGCTGCACCCGAG
GAGCCAGCCGATGTCCGTGTGGTGGATGTGCCCACCGTTTCTGGGCAACT
GCTCCAGGATGGCTACCACTACCAGCAGCCGGCCGAGATGCCCGCCGAGC
TGAGGGAGGCCGCTCCCGAGTATCTGCCTCCGATCGGCGGCGAGGAGGTC
ATCGTGGAGGGTCCAGCTGGAGGCGAGAGTGCCGTCCTGGGCAGCGATGG
CTACCAGTATCGTGCCATCAGGCGTTACAGATTTGCAAGCTTTCTAGACC
BO06736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4229-PA | 771 | CG4229-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4229-RA | 949 | CG4229-RA | 74..841 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16557085..16557850 | 19..784 | 3830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:33:00 has no hits.
BO06736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:01 Download gff for
BO06736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:42 Download gff for
BO06736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:42 Download gff for
BO06736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 74..850 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:42 Download gff for
BO06736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 74..850 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:42 Download gff for
BO06736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16557081..16557859 | 12..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:42 Download gff for
BO06736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16550181..16550959 | 12..795 | 99 | | Plus |
BO06736.complete Sequence
802 bp (802 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630510
> BO06736.complete
GAAGTTATCAGTCGACATGAAAATCTTCTCGCTTGGTGGTGTCCTTACCC
TCTCCGCTGTGGCCAGTGTGGCCCTAGGTGCTCCTCAATTGGAATCTCGG
CTGCGCCGCGATGTCTCGGAACTGGTGGATCCCGCTGCAGTGGAATATCT
GCCTCCTTCGGTCACCGAGGCTGTCCTCCTGAACGCTGAGCCTGTGGAGG
CTGAGGCTCATGCCGATCCTGCTGCCCTGGAAGCCGATCCGGAGGCCACT
GTCCTGGGCGATGAGGGCTACGAGTACCGCACGGTGCGCCGCCTTAAGCT
GCGCCATCGCAACCGTCGTGATGTGTCCCATTTGCAGCCAGCCAGGCAGT
ATCTGCCACCCAGCACCGCCTACTTGCCACCTGCTCAGGAGGCGCAGGCT
GCACCCGAGGCTCCGGCAGCTGCAGCTCCACCTGCCGATGACACCGAGGA
GGTGGTGTCCGCCGCCGAGCCCAAGGTGAACCGGGAGTACCTTCCGCCCA
CGGAAGCTGCACCAGCCGCTGAGGAAACCACCGAGGCGGCTGCACCCGAG
GAGCCAGCCGATGTCCGTGTGGTGGATGTGCCCACCGTTTCTGGGCAACT
GCTCCAGGATGGCTACCACTACCAGCAGCCGGCCGAGATGCCCGCCGAGC
TGAGGGAGGCCGCTCCCGAGTATCTGCCTCCGATCGGCGGCGAGGAGGTC
ATCGTGGAGGGTCCAGCTGGAGGCGAGAGTGCCGTCCTGGGCAGCGATGG
CTACCAGTATCGTGCCATCAGGCGTTACAGATTTGCAAGCTTTCTAGACC
AT
BO06736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4229-RA | 771 | CG4229-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4229-RA | 949 | CG4229-RA | 74..841 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16557085..16557850 | 19..784 | 3830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:40:41 has no hits.
BO06736.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:33 Download gff for
BO06736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:54 Download gff for
BO06736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 54..830 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:10 Download gff for
BO06736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 74..841 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:33 Download gff for
BO06736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 54..830 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:04 Download gff for
BO06736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4229-RA | 74..841 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:04 Download gff for
BO06736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16557084..16557850 | 17..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:10 Download gff for
BO06736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16550184..16550950 | 17..786 | 99 | | Plus |
BO06736.pep Sequence
Translation from 16 to 802
> BO06736.pep
MKIFSLGGVLTLSAVASVALGAPQLESRLRRDVSELVDPAAVEYLPPSVT
EAVLLNAEPVEAEAHADPAALEADPEATVLGDEGYEYRTVRRLKLRHRNR
RDVSHLQPARQYLPPSTAYLPPAQEAQAAPEAPAAAAPPADDTEEVVSAA
EPKVNREYLPPTEAAPAAEETTEAAAPEEPADVRVVDVPTVSGQLLQDGY
HYQQPAEMPAELREAAPEYLPPIGGEEVIVEGPAGGESAVLGSDGYQYRA
IRRYRFASFLDH
BO06736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4229-PA | 256 | CG4229-PA | 1..256 | 1..256 | 1299 | 100 | Plus |
CG32237-PA | 911 | CG32237-PA | 1..237 | 1..256 | 280 | 36 | Plus |
CG32237-PA | 911 | CG32237-PA | 626..853 | 24..256 | 278 | 37.2 | Plus |
CG32237-PA | 911 | CG32237-PA | 402..629 | 24..256 | 274 | 36.9 | Plus |
CG32237-PA | 911 | CG32237-PA | 178..405 | 24..256 | 272 | 35.2 | Plus |
CG32237-PA | 911 | CG32237-PA | 458..685 | 24..256 | 269 | 35.2 | Plus |
CG32237-PA | 911 | CG32237-PA | 682..904 | 24..255 | 267 | 35.7 | Plus |
CG32237-PA | 911 | CG32237-PA | 234..461 | 24..256 | 263 | 35.3 | Plus |
CG13705-PA | 432 | CG13705-PA | 20..196 | 41..253 | 238 | 34.8 | Plus |
CG13705-PA | 432 | CG13705-PA | 59..241 | 24..253 | 223 | 33.6 | Plus |
CG13705-PA | 432 | CG13705-PA | 154..332 | 28..253 | 220 | 35.7 | Plus |
CG13705-PA | 432 | CG13705-PA | 199..428 | 28..255 | 213 | 31.2 | Plus |
CG13033-PA | 211 | CG13033-PA | 24..211 | 100..256 | 194 | 34 | Plus |
CG7465-PA | 321 | CG7465-PA | 74..315 | 28..253 | 194 | 32.3 | Plus |