Clone BO06736 Report

Search the DGRC for BO06736

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG4229-RA
Protein status:BO06736.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO06736.3prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-03

> BO06736.3prime
ATGGTCTAGAAAGCTTGCAAATCTGTAACGCCTGATGGCACGATACTGGT
AGCCATCGCTGCCCAGGACGGCACTCTCGCCTCCAGCTGGACCCTCCACG
ATGACCTCCTCGCCGCCGATCGGAGGCAGATACTCGGGAGCGGCCTCCCT
CAGCTCGGCGGGCATCTCGGCCGGCTGCTGGTAGTGGTAGCCATCCTGGA
GCAGTTGCCCAGAAACGGTGGGCACATCCACCACACGGACATCGGCTGGC
TCCTCGGGTGCAGCCGCCTCGGTGGTTTCCTCAGCGGCTGGTGCAGCTTC
CGTGGGCGGAAGGTACTCCCGGTTCACCTTGGGCTCGGCGGCGGACACCA
CCTCCTCGGTGTCATCGGCAGGTGGAGCTGCAGCTGCCGGAGCCTCGGGT
GCAGCCTGCGCCTCCTGAGCAGGTGGCAAGTAGGCGGTGCTGGGTGGCAG
ATACTGCCTGGCTGGCTGCAAATGGGACACATCACGACGGTTGCGATGGC
GCAGCTTAAGGCGGCGCACCGTGCGGTACTCGTAGCCCTCATCGCCCAGG
ACAGTGGCCTCCGGATCGGCTTCCAGGGCAGCAGGATCGGCATGAGCCTC
AGCCTCCACAGGCTCAGCGTTCAGGAGGACAGCCTCGGTGACCGAAGGAG
GCAGATATTCCACTGCAGCGGGATCCACCAGTTCCGAGACATCGCGGCGC
AGCCGAGATTCCAATTGAGGAGCACCTAGGGCCACACTGGCCACAGCGGA
GAGGGTAAGGACACCACCAAGCGAGAAGATTTTCATGTCGACTGATAACT

BO06736.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4229-PA 771 CG4229-RA 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4229-RA 949 CG4229-RA 74..841 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16557085..16557850 784..19 3830 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:18:15 has no hits.

BO06736.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:00 Download gff for BO06736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:41 Download gff for BO06736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-PA 1..771 15..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:11 Download gff for BO06736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 74..850 8..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:09 Download gff for BO06736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 74..850 8..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:09 Download gff for BO06736.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16557081..16557859 8..791 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:11 Download gff for BO06736.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16550181..16550959 8..791 99   Minus

BO06736.5prime Sequence

800 bp (767 high quality bases) assembled on 2005-12-03

> BO06736.5prime
GAAGTTATCAGTCGACATGAAAATCTTCTCGCTTGGTGGTGTCCTTACCC
TCTCCGCTGTGGCCAGTGTGGCCCTAGGTGCTCCTCAATTGGAATCTCGG
CTGCGCCGCGATGTCTCGGAACTGGTGGATCCCGCTGCAGTGGAATATCT
GCCTCCTTCGGTCACCGAGGCTGTCCTCCTGAACGCTGAGCCTGTGGAGG
CTGAGGCTCATGCCGATCCTGCTGCCCTGGAAGCCGATCCGGAGGCCACT
GTCCTGGGCGATGAGGGCTACGAGTACCGCACGGTGCGCCGCCTTAAGCT
GCGCCATCGCAACCGTCGTGATGTGTCCCATTTGCAGCCAGCCAGGCAGT
ATCTGCCACCCAGCACCGCCTACTTGCCACCTGCTCAGGAGGCGCAGGCT
GCACCCGAGGCTCCGGCAGCTGCAGCTCCACCTGCCGATGACACCGAGGA
GGTGGTGTCCGCCGCCGAGCCCAAGGTGAACCGGGAGTACCTTCCGCCCA
CGGAAGCTGCACCAGCCGCTGAGGAAACCACCGAGGCGGCTGCACCCGAG
GAGCCAGCCGATGTCCGTGTGGTGGATGTGCCCACCGTTTCTGGGCAACT
GCTCCAGGATGGCTACCACTACCAGCAGCCGGCCGAGATGCCCGCCGAGC
TGAGGGAGGCCGCTCCCGAGTATCTGCCTCCGATCGGCGGCGAGGAGGTC
ATCGTGGAGGGTCCAGCTGGAGGCGAGAGTGCCGTCCTGGGCAGCGATGG
CTACCAGTATCGTGCCATCAGGCGTTACAGATTTGCAAGCTTTCTAGACC

BO06736.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4229-PA 771 CG4229-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4229-RA 949 CG4229-RA 74..841 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16557085..16557850 19..784 3830 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:33:00 has no hits.

BO06736.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:01 Download gff for BO06736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:42 Download gff for BO06736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:42 Download gff for BO06736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 74..850 17..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:42 Download gff for BO06736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 74..850 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:42 Download gff for BO06736.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16557081..16557859 12..795 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:42 Download gff for BO06736.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16550181..16550959 12..795 99   Plus

BO06736.complete Sequence

802 bp (802 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630510

> BO06736.complete
GAAGTTATCAGTCGACATGAAAATCTTCTCGCTTGGTGGTGTCCTTACCC
TCTCCGCTGTGGCCAGTGTGGCCCTAGGTGCTCCTCAATTGGAATCTCGG
CTGCGCCGCGATGTCTCGGAACTGGTGGATCCCGCTGCAGTGGAATATCT
GCCTCCTTCGGTCACCGAGGCTGTCCTCCTGAACGCTGAGCCTGTGGAGG
CTGAGGCTCATGCCGATCCTGCTGCCCTGGAAGCCGATCCGGAGGCCACT
GTCCTGGGCGATGAGGGCTACGAGTACCGCACGGTGCGCCGCCTTAAGCT
GCGCCATCGCAACCGTCGTGATGTGTCCCATTTGCAGCCAGCCAGGCAGT
ATCTGCCACCCAGCACCGCCTACTTGCCACCTGCTCAGGAGGCGCAGGCT
GCACCCGAGGCTCCGGCAGCTGCAGCTCCACCTGCCGATGACACCGAGGA
GGTGGTGTCCGCCGCCGAGCCCAAGGTGAACCGGGAGTACCTTCCGCCCA
CGGAAGCTGCACCAGCCGCTGAGGAAACCACCGAGGCGGCTGCACCCGAG
GAGCCAGCCGATGTCCGTGTGGTGGATGTGCCCACCGTTTCTGGGCAACT
GCTCCAGGATGGCTACCACTACCAGCAGCCGGCCGAGATGCCCGCCGAGC
TGAGGGAGGCCGCTCCCGAGTATCTGCCTCCGATCGGCGGCGAGGAGGTC
ATCGTGGAGGGTCCAGCTGGAGGCGAGAGTGCCGTCCTGGGCAGCGATGG
CTACCAGTATCGTGCCATCAGGCGTTACAGATTTGCAAGCTTTCTAGACC
AT

BO06736.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4229-RA 771 CG4229-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4229-RA 949 CG4229-RA 74..841 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16557085..16557850 19..784 3830 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:40:41 has no hits.

BO06736.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:33 Download gff for BO06736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:54 Download gff for BO06736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 54..830 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:10 Download gff for BO06736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 74..841 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:33 Download gff for BO06736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 54..830 17..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:04 Download gff for BO06736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4229-RA 74..841 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:04 Download gff for BO06736.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16557084..16557850 17..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:10 Download gff for BO06736.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16550184..16550950 17..786 99   Plus

BO06736.pep Sequence

Translation from 16 to 802

> BO06736.pep
MKIFSLGGVLTLSAVASVALGAPQLESRLRRDVSELVDPAAVEYLPPSVT
EAVLLNAEPVEAEAHADPAALEADPEATVLGDEGYEYRTVRRLKLRHRNR
RDVSHLQPARQYLPPSTAYLPPAQEAQAAPEAPAAAAPPADDTEEVVSAA
EPKVNREYLPPTEAAPAAEETTEAAAPEEPADVRVVDVPTVSGQLLQDGY
HYQQPAEMPAELREAAPEYLPPIGGEEVIVEGPAGGESAVLGSDGYQYRA
IRRYRFASFLDH

BO06736.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4229-PA 256 CG4229-PA 1..256 1..256 1299 100 Plus
CG32237-PA 911 CG32237-PA 1..237 1..256 280 36 Plus
CG32237-PA 911 CG32237-PA 626..853 24..256 278 37.2 Plus
CG32237-PA 911 CG32237-PA 402..629 24..256 274 36.9 Plus
CG32237-PA 911 CG32237-PA 178..405 24..256 272 35.2 Plus
CG32237-PA 911 CG32237-PA 458..685 24..256 269 35.2 Plus
CG32237-PA 911 CG32237-PA 682..904 24..255 267 35.7 Plus
CG32237-PA 911 CG32237-PA 234..461 24..256 263 35.3 Plus
CG13705-PA 432 CG13705-PA 20..196 41..253 238 34.8 Plus
CG13705-PA 432 CG13705-PA 59..241 24..253 223 33.6 Plus
CG13705-PA 432 CG13705-PA 154..332 28..253 220 35.7 Plus
CG13705-PA 432 CG13705-PA 199..428 28..255 213 31.2 Plus
CG13033-PA 211 CG13033-PA 24..211 100..256 194 34 Plus
CG7465-PA 321 CG7465-PA 74..315 28..253 194 32.3 Plus