Clone Sequence Records
BO06737.3prime Sequence
953 bp (848 high quality bases) assembled on 2005-12-03
> BO06737.3prime
ATGGTCTAGAAAGCTTGCGTGGCCCCTCTTTGAGGGGAGAATCCCGCCGA
GCGACTGGATCAGCTCGACCAGGTGGGTGCGCATTGCTGCGATTTGGTCT
ACGGCGATGAGCAGCGAACTGGTGGCGTATCCGCATCTGGCTACATAGTC
CGCAACGTGGTCGGTCATGCACATCAGGTGAATTCCGGATGCAGGGTCGC
GACCGGAGCCTTCCTTGCCAGCCGCTTGGCGCTCCTGCTGTAGGCAGCGA
CCGGTGACCAGGGCGAACTTCCAGGCTTCGAGGGGCGCCCGCAAAGTTTC
CGACACCGAGGCGGCCAACGGCGAATGACAGTTGTCCAACGAATCGTAGT
GGTAAAACTTGCTGTCCGGCCGCGAAATCACCAGTAGGGACCAGTGTCCG
TGGGGTCTTGGATGGGTGGAAAGCGGCACCAGGATGAACTGTTTCTCGTT
GAGACGGCGGTCGCGCACCATCGCCCACAACTGGCGCATATTCATGTGGC
GCAGTCGTGCGGCCAGGCCCGGATTCAGGAAGTGCAAATCCAACTCGGAG
CGATAACGGCGGTGCTGAAGGTAGGCGTAGTAGAAGGCCACCAGGCGTTC
GTTGACGCCCTCGTTAGCGGACTGAAGCAGCTGGACATCCGAGTGGCGCA
GCGAGATGTCCATGAAGCGGAGCGCAACCAGGCTCACCTCGGCCAGCTGA
TGCGGTCCATCTCCGCTGCCGCGCTCCAGAGCCAGCGAGGTGCTTGTTTT
GGAGTCCCTGATCTTGTTTTTGTTCTTGCCCTTGCCGTTGCCCTTGGCCT
TGAACTTACCCTTTTCCTTGTCGGTGCCCTTTTCCTTGACCTTGCCCTTT
CGCATTGGCTTGGTCTTCACTCTGGGCTTCTTATCCTGGAGGGGCTCCAT
CTGGTTCTTTGTTTTAAGCACCTTTTTGGCCGCCAGCATGTCGACTGATA
ACT
BO06737.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1503-PA | 924 | CG1503-RA | 91..921 | 849..19 | 4155 | 100 | Minus |
| CG1503-PA | 924 | CG1503-RA | 1..85 | 939..855 | 425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1503-RB | 1405 | CG1503-RB | 218..1138 | 939..19 | 4560 | 99.8 | Minus |
| CG1503-RA | 1237 | CG1503-RA | 218..1138 | 939..19 | 4560 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21105620..21106152 | 407..939 | 2590 | 99.1 | Plus |
| X | 23542271 | X | 21104962..21105351 | 19..408 | 1950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:48:48 has no hits.
BO06737.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:02 Download gff for
BO06737.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-PA | 1..924 | 16..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:44 Download gff for
BO06737.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-PA | 1..924 | 16..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:56 Download gff for
BO06737.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 209..1142 | 14..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:42 Download gff for
BO06737.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 211..1144 | 14..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:42 Download gff for
BO06737.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21104956..21105349 | 14..406 | 99 | <- | Plus |
| X | 21105620..21106159 | 407..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:56 Download gff for
BO06737.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20975983..20976376 | 14..406 | 99 | <- | Plus |
| arm_X | 20976647..20977186 | 407..946 | 99 | | Plus |
BO06737.5prime Sequence
917 bp (827 high quality bases) assembled on 2005-12-03
> BO06737.5prime
GAAGTTATCAGTCGACATGCTGGCGGCCAAAAAGGTGCTTAAAACAAAGA
ACCAGATGGAGCCCCTCCAGGATAAGAAGCCCAGAGTGAAGACCAAGCCA
AATGCGAAGGGCAAGGTCAAGGAAAAGGGCACCGACAAGGAAAAGGGTAA
GTTCAAGGCCAAGGGCAACGGCAAGGGCAAGAACAAAAACAAGATCAGGG
ACTCCAAAACAAGCACCTCGCTGGCTCTGGAGCGCGGCAGCGGAGATGGA
CCGCATCAGCTGGCCGAGGTGAGCCTGGTTGCGCTCCGCTTCATGGACAT
CTCGCTGCGCCACTCGGATGTCCAGCTGCTTCAGTCCGCTAACGAGGGCG
TCAACGAACGCCTGGTGGCCTTCTACTACGCCTACCTTCAGCACCGCCGT
TATCGCTCCGAGTTGGATTTGCACTTCCTGAATCCGGGCCTGGCCGCACG
ACTGCGCCACATGAATATGCGCCAGTTGTGGGCGATGGTGCGCGACCGCC
GTCTCAACGAGAAACAGTTCATCCTGGTGCCGCTTTCCACCCATCCAAGA
CCCCACGGACACTGGTCCCTACTGGTGATTTCGCGGCCGGACAGCAAGTT
TTACCACTACGATTCGTTGGACAACTGTCATTCGCCGTTGGCCGCCTCGG
TGTCGGAAACTTTGCGGGCGCCCCTCGAAGCCTGGAAGTTCGCCCTGGTC
ACCGGTCGCTGCCTACAGCAGGAGCGCCAAGCGGCTGGCAAGGAAGGCTC
CGGTCGCGACCCTGCATCCGGAATTCACCTGATGTGCATGACCGACCACG
TTGCGGACTATGTAGCCAGATGCGGATACGCCACCAGTTCGCTGCTCATC
GCCGTAGACCAATCGCAGCAATGCGCACCCACCTGGTCGAGCTGATCCAG
TCGCTCGGCGGGGATCT
BO06737.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1503-PA | 924 | CG1503-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
| CG1503-PA | 924 | CG1503-RA | 846..897 | 861..912 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1503-RB | 1405 | CG1503-RB | 218..1114 | 17..912 | 4460 | 99.9 | Plus |
| CG1503-RA | 1237 | CG1503-RA | 218..1114 | 17..912 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21105620..21106152 | 549..17 | 2665 | 100 | Minus |
| X | 23542271 | X | 21104986..21105351 | 912..548 | 1780 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:41:30 has no hits.
BO06737.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:02 Download gff for
BO06737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:46 Download gff for
BO06737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:32 Download gff for
BO06737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 209..1115 | 10..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:44 Download gff for
BO06737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 211..1117 | 10..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:44 Download gff for
BO06737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21104981..21105349 | 550..917 | 99 | <- | Minus |
| X | 21105620..21106159 | 10..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:32 Download gff for
BO06737.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20976008..20976376 | 550..917 | 99 | <- | Minus |
| arm_X | 20976647..20977186 | 10..549 | 99 | | Minus |
BO06737.complete Sequence
955 bp (955 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630511
> BO06737.complete
GAAGTTATCAGTCGACATGCTGGCGGCCAAAAAGGTGCTTAAAACAAAGA
ACCAGATGGAGCCCCTCCAGGATAAGAAGCCCAGAGTGAAGACCAAGCCA
AATGCGAAGGGCAAGGTCAAGGAAAAGGGCACCGACAAGGAAAAGGGTAA
GTTCAAGGCCAAGGGCAACGGCAAGGGCAAGAACAAAAACAAGATCAGGG
ACTCCAAAACAAGCACCTCGCTGGCTCTGGAGCGCGGCAGCGGAGATGGA
CCGCATCAGCTGGCCGAGGTGAGCCTGGTTGCGCTCCGCTTCATGGACAT
CTCGCTGCGCCACTCGGATGTCCAGCTGCTTCAGTCCGCTAACGAGGGCG
TCAACGAACGCCTGGTGGCCTTCTACTACGCCTACCTTCAGCACCGCCGT
TATCGCTCCGAGTTGGATTTGCACTTCCTGAATCCGGGCCTGGCCGCACG
ACTGCGCCACATGAATATGCGCCAGTTGTGGGCGATGGTGCGCGACCGCC
GTCTCAACGAGAAACAGTTCATCCTGGTGCCGCTTTCCACCCATCCAAGA
CCCCACGGACACTGGTCCCTACTGGTGATTTCGCGGCCGGACAGCAAGTT
TTACCACTACGATTCGTTGGACAACTGTCATTCGCCGTTGGCCGCCTCGG
TGTCGGAAACTTTGCGGGCGCCCCTCGAAGCCTGGAAGTTCGCCCTGGTC
ACCGGTCGCTGCCTACAGCAGGAGCGCCAAGCGGCTGGCAAGGAAGGCTC
CGGTCGCGACCCTGCATCCGGAATTCACCTGATGTGCATGACCGACCACG
TTGCGGACTATGTAGCCAGATGCGGATACGCCACCAGTTCGCTGCTCATC
GCCGTAGACCAAATCGCAGCAATGCGCACCCACCTGGTCGAGCTGATCCA
GTCGCTCGGCGGGATTCTCCCCTCAAAGAGGGGCCACGCAAGCTTTCTAG
ACCAT
BO06737.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1503-RB | 924 | CG1503-PB | 1..921 | 17..937 | 4605 | 100 | Plus |
| CG1503-RA | 924 | CG1503-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1503-RB | 1405 | CG1503-RB | 218..1138 | 17..937 | 4605 | 100 | Plus |
| CG1503-RA | 1237 | CG1503-RA | 218..1138 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21105620..21106152 | 549..17 | 2665 | 100 | Minus |
| X | 23542271 | X | 21104962..21105351 | 937..548 | 1950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:48:27 has no hits.
BO06737.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:34 Download gff for
BO06737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:55 Download gff for
BO06737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 209..1142 | 10..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:27 Download gff for
BO06737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 216..1136 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:35 Download gff for
BO06737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 209..1142 | 10..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:09 Download gff for
BO06737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1503-RA | 218..1138 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:09 Download gff for
BO06737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21104959..21105349 | 550..939 | 99 | <- | Minus |
| X | 21105620..21106152 | 17..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:27 Download gff for
BO06737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20975986..20976376 | 550..939 | 99 | <- | Minus |
| arm_X | 20976647..20977179 | 17..549 | 100 | | Minus |
BO06737.pep Sequence
Translation from 16 to 955
> BO06737.pep
MLAAKKVLKTKNQMEPLQDKKPRVKTKPNAKGKVKEKGTDKEKGKFKAKG
NGKGKNKNKIRDSKTSTSLALERGSGDGPHQLAEVSLVALRFMDISLRHS
DVQLLQSANEGVNERLVAFYYAYLQHRRYRSELDLHFLNPGLAARLRHMN
MRQLWAMVRDRRLNEKQFILVPLSTHPRPHGHWSLLVISRPDSKFYHYDS
LDNCHSPLAASVSETLRAPLEAWKFALVTGRCLQQERQAAGKEGSGRDPA
SGIHLMCMTDHVADYVARCGYATSSLLIAVDQIAAMRTHLVELIQSLGGI
LPSKRGHASFLDH
BO06737.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1503-PB | 307 | CG1503-PB | 1..307 | 1..307 | 1594 | 100 | Plus |
| CG1503-PA | 307 | CG1503-PA | 1..307 | 1..307 | 1594 | 100 | Plus |
| Den1-PC | 249 | CG8493-PC | 15..247 | 53..299 | 335 | 33.6 | Plus |
| Den1-PA | 215 | CG8493-PA | 10..213 | 88..299 | 324 | 35.8 | Plus |
