Clone Sequence Records
BO06740.3prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-03
> BO06740.3prime
ATGGTCTAGAAAGCTTGCGAGCTCGTCATCCATGTTGAAGTCTTCCGGCG
GAAAGTCACCAACCGTAACGGATAATGGTGATACAAAGCCGCCGTAATTT
GGGGCACACGTAAAGTAGGCCTTTCCACCGAAACTTCCATTATTTTTCCC
CAGTGGTTCGTCGTATTCCACTCCAATAAAGTGACCACTTTTCCCTTCGA
GCGGACCATTGTATCGGATTGTTCCTCGTCGTGTTGGATTACCTGGAACC
GTAACCTCACATCTGCCACCCAGTACACAAAGTTCCGCCCGTTTTTGGAT
CTCCTCCGCCTGAAGGCGCTTCTTCTCCTCCGCCTGTTGCATCTCCTCAT
CGTTGTACTTGCCCATGCGATTAATCTTGAGGTAGTTGCGCACAGAATCT
GTTCGCTGTTCGTACTGATCTTTGGACAGTTCGAATTTCTCAACGGGAGC
GCTGTCGAACGAGAAGGTAGCAAAGCTATCGACGACATGCAGCCGGAGTC
CATCACTGTTGGCATAGTAACCCAGTTGGGCGTCATTGTTGTCCATTGTG
GACACGCAGGTGTCACCCTTGAAGACCTGCACCTTCATGGTACCGGCACA
TCCGCCCGTCAGTATCTCAAGTTTGGTCTTGAGCTGGGCAACTGTTAGAT
CCTTGGCTAACTTGACCTCGAAGGCGACTGCATCATTGTGAGAGTTGGAA
ACATTCACCTTGATGAAATCTGACTTGCCGGTTTCAATTATAGTCGACAT
GTCGACTGATAACT
BO06740.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11242-PA | 735 | CG11242-RA | 1..732 | 750..19 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..854 | 750..19 | 3660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 254..629 | 1880 | 100 | Plus |
2R | 25286936 | 2R | 19485983..19486106 | 134..257 | 620 | 100 | Plus |
2R | 25286936 | 2R | 19486593..19486715 | 628..750 | 615 | 100 | Plus |
2R | 25286936 | 2R | 19485806..19485922 | 19..135 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:18:52 has no hits.
BO06740.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:06 Download gff for
BO06740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 16..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:50 Download gff for
BO06740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 16..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:14 Download gff for
BO06740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..854 | 19..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:41:15 Download gff for
BO06740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..854 | 19..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:41:15 Download gff for
BO06740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19485806..19485920 | 19..133 | 100 | <- | Plus |
2R | 19485983..19486104 | 134..255 | 100 | <- | Plus |
2R | 19486169..19486540 | 256..627 | 100 | <- | Plus |
2R | 19486593..19486722 | 628..757 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:14 Download gff for
BO06740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373311..15373425 | 19..133 | 100 | <- | Plus |
arm_2R | 15373488..15373609 | 134..255 | 100 | <- | Plus |
arm_2R | 15373674..15374045 | 256..627 | 100 | <- | Plus |
arm_2R | 15374098..15374227 | 628..757 | 97 | | Plus |
BO06740.5prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-03
> BO06740.5prime
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCGC
AAGCTTTCTAGACC
BO06740.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11242-PA | 735 | CG11242-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..854 | 17..748 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 513..138 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 19485983..19486106 | 633..510 | 620 | 100 | Minus |
2R | 25286936 | 2R | 19486593..19486715 | 139..17 | 615 | 100 | Minus |
2R | 25286936 | 2R | 19485806..19485922 | 748..632 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:02:46 has no hits.
BO06740.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:07 Download gff for
BO06740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:51 Download gff for
BO06740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:31 Download gff for
BO06740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..854 | 10..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:00 Download gff for
BO06740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..854 | 10..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:00 Download gff for
BO06740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19485806..19485920 | 634..748 | 100 | <- | Minus |
2R | 19485983..19486104 | 512..633 | 100 | <- | Minus |
2R | 19486169..19486540 | 140..511 | 100 | <- | Minus |
2R | 19486593..19486722 | 10..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:31 Download gff for
BO06740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373311..15373425 | 634..748 | 100 | <- | Minus |
arm_2R | 15373488..15373609 | 512..633 | 100 | <- | Minus |
arm_2R | 15373674..15374045 | 140..511 | 100 | <- | Minus |
arm_2R | 15374098..15374227 | 10..139 | 97 | | Minus |
BO06740.complete Sequence
766 bp (766 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630512
> BO06740.complete
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCGC
AAGCTTTCTAGACCAT
BO06740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 735 | CG11242-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..854 | 17..748 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 513..138 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 19485983..19486106 | 633..510 | 620 | 100 | Minus |
2R | 25286936 | 2R | 19486593..19486715 | 139..17 | 615 | 100 | Minus |
2R | 25286936 | 2R | 19485806..19485922 | 748..632 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:14:34 has no hits.
BO06740.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:36 Download gff for
BO06740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-RA | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:57 Download gff for
BO06740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-RA | 114..852 | 10..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:37 Download gff for
BO06740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 123..854 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:36 Download gff for
BO06740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-RA | 114..852 | 10..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:18 Download gff for
BO06740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 123..854 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:18 Download gff for
BO06740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19485803..19485920 | 634..750 | 98 | <- | Minus |
2R | 19485983..19486104 | 512..633 | 100 | <- | Minus |
2R | 19486169..19486540 | 140..511 | 100 | <- | Minus |
2R | 19486593..19486715 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:37 Download gff for
BO06740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373308..15373425 | 634..750 | 98 | <- | Minus |
arm_2R | 15373488..15373609 | 512..633 | 100 | <- | Minus |
arm_2R | 15373674..15374045 | 140..511 | 100 | <- | Minus |
arm_2R | 15374098..15374220 | 17..139 | 100 | | Minus |
BO06740.pep Sequence
Translation from 16 to 766
> BO06740.pep
MSTIIETGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGG
CAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDSFATFSFDS
APVEKFELSKDQYEQRTDSVRNYLKINRMGKYNDEEMQQAEEKKRLQAEE
IQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKSGHFIGVEYDEPL
GKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDELASFLDH
BO06740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-PA | 244 | CG11242-PA | 1..244 | 1..244 | 1280 | 100 | Plus |