Clone BO06740 Report

Search the DGRC for BO06740

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptTBCB-RA
Protein status:BO06740.pep: validated full length
Sequenced Size:766

Clone Sequence Records

BO06740.3prime Sequence

764 bp (763 high quality bases) assembled on 2005-12-03

> BO06740.3prime
ATGGTCTAGAAAGCTTGCGAGCTCGTCATCCATGTTGAAGTCTTCCGGCG
GAAAGTCACCAACCGTAACGGATAATGGTGATACAAAGCCGCCGTAATTT
GGGGCACACGTAAAGTAGGCCTTTCCACCGAAACTTCCATTATTTTTCCC
CAGTGGTTCGTCGTATTCCACTCCAATAAAGTGACCACTTTTCCCTTCGA
GCGGACCATTGTATCGGATTGTTCCTCGTCGTGTTGGATTACCTGGAACC
GTAACCTCACATCTGCCACCCAGTACACAAAGTTCCGCCCGTTTTTGGAT
CTCCTCCGCCTGAAGGCGCTTCTTCTCCTCCGCCTGTTGCATCTCCTCAT
CGTTGTACTTGCCCATGCGATTAATCTTGAGGTAGTTGCGCACAGAATCT
GTTCGCTGTTCGTACTGATCTTTGGACAGTTCGAATTTCTCAACGGGAGC
GCTGTCGAACGAGAAGGTAGCAAAGCTATCGACGACATGCAGCCGGAGTC
CATCACTGTTGGCATAGTAACCCAGTTGGGCGTCATTGTTGTCCATTGTG
GACACGCAGGTGTCACCCTTGAAGACCTGCACCTTCATGGTACCGGCACA
TCCGCCCGTCAGTATCTCAAGTTTGGTCTTGAGCTGGGCAACTGTTAGAT
CCTTGGCTAACTTGACCTCGAAGGCGACTGCATCATTGTGAGAGTTGGAA
ACATTCACCTTGATGAAATCTGACTTGCCGGTTTCAATTATAGTCGACAT
GTCGACTGATAACT

BO06740.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11242-PA 735 CG11242-RA 1..732 750..19 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 1166 CG11242-RA 123..854 750..19 3660 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19486167..19486542 254..629 1880 100 Plus
2R 25286936 2R 19485983..19486106 134..257 620 100 Plus
2R 25286936 2R 19486593..19486715 628..750 615 100 Plus
2R 25286936 2R 19485806..19485922 19..135 585 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:18:52 has no hits.

BO06740.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:06 Download gff for BO06740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 16..750 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:50 Download gff for BO06740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 16..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:14 Download gff for BO06740.3prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..854 19..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:41:15 Download gff for BO06740.3prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..854 19..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:41:15 Download gff for BO06740.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19485806..19485920 19..133 100 <- Plus
2R 19485983..19486104 134..255 100 <- Plus
2R 19486169..19486540 256..627 100 <- Plus
2R 19486593..19486722 628..757 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:14 Download gff for BO06740.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15373311..15373425 19..133 100 <- Plus
arm_2R 15373488..15373609 134..255 100 <- Plus
arm_2R 15373674..15374045 256..627 100 <- Plus
arm_2R 15374098..15374227 628..757 97   Plus

BO06740.5prime Sequence

764 bp (763 high quality bases) assembled on 2005-12-03

> BO06740.5prime
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCGC
AAGCTTTCTAGACC

BO06740.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11242-PA 735 CG11242-RA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 1166 CG11242-RA 123..854 17..748 3660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19486167..19486542 513..138 1880 100 Minus
2R 25286936 2R 19485983..19486106 633..510 620 100 Minus
2R 25286936 2R 19486593..19486715 139..17 615 100 Minus
2R 25286936 2R 19485806..19485922 748..632 585 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:02:46 has no hits.

BO06740.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:07 Download gff for BO06740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 17..751 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:51 Download gff for BO06740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 17..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:31 Download gff for BO06740.5prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..854 10..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:00 Download gff for BO06740.5prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..854 10..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:00 Download gff for BO06740.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19485806..19485920 634..748 100 <- Minus
2R 19485983..19486104 512..633 100 <- Minus
2R 19486169..19486540 140..511 100 <- Minus
2R 19486593..19486722 10..139 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:31 Download gff for BO06740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15373311..15373425 634..748 100 <- Minus
arm_2R 15373488..15373609 512..633 100 <- Minus
arm_2R 15373674..15374045 140..511 100 <- Minus
arm_2R 15374098..15374227 10..139 97   Minus

BO06740.complete Sequence

766 bp (766 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630512

> BO06740.complete
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCGC
AAGCTTTCTAGACCAT

BO06740.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 735 CG11242-PA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 1166 CG11242-RA 123..854 17..748 3660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19486167..19486542 513..138 1880 100 Minus
2R 25286936 2R 19485983..19486106 633..510 620 100 Minus
2R 25286936 2R 19486593..19486715 139..17 615 100 Minus
2R 25286936 2R 19485806..19485922 748..632 585 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:14:34 has no hits.

BO06740.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:36 Download gff for BO06740.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 1..735 17..751 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:57 Download gff for BO06740.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 114..852 10..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:37 Download gff for BO06740.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 123..854 17..750 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:36 Download gff for BO06740.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 114..852 10..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:18 Download gff for BO06740.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 123..854 17..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:18 Download gff for BO06740.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19485803..19485920 634..750 98 <- Minus
2R 19485983..19486104 512..633 100 <- Minus
2R 19486169..19486540 140..511 100 <- Minus
2R 19486593..19486715 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:37 Download gff for BO06740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15373308..15373425 634..750 98 <- Minus
arm_2R 15373488..15373609 512..633 100 <- Minus
arm_2R 15373674..15374045 140..511 100 <- Minus
arm_2R 15374098..15374220 17..139 100   Minus

BO06740.pep Sequence

Translation from 16 to 766

> BO06740.pep
MSTIIETGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGG
CAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDSFATFSFDS
APVEKFELSKDQYEQRTDSVRNYLKINRMGKYNDEEMQQAEEKKRLQAEE
IQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKSGHFIGVEYDEPL
GKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDELASFLDH

BO06740.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-PA 244 CG11242-PA 1..244 1..244 1280 100 Plus